Strain Fitness in Shewanella amazonensis SB2B around Sama_0941

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
1,137,371	+				+2.6
1,137,372	-				-0.7
1,137,372	-				+1.1
1,137,372	-				+1.3
1,137,427	-				+0.3
1,137,443	+				+1.3
1,137,505	+				-0.1
1,137,505	+				+2.8
1,137,505	+				+1.4
1,137,512	+				-0.0
1,137,529	+				-1.3
1,137,538	-				-0.7
1,137,540	+				-0.1
1,137,540	+				+0.9
1,137,541	-				-1.9
1,137,541	-				+1.3
1,137,547	+				-1.1
1,137,547	+				+0.9
1,137,548	-				-2.2
1,137,548	-				-2.2
1,137,548	-				+1.1
1,137,548	-				-0.9
1,137,548	-				-1.9
1,137,581	+				-0.2
1,137,582	-				+1.3
1,137,582	-				-2.1
1,137,589	+				+2.1
1,137,589	+				-2.1
1,137,644	+				+0.7
1,137,644	+				+0.4
1,137,680	+				-2.1
1,137,680	+				+0.7
1,137,681	-				+1.3
1,137,681	-				+1.8
1,137,683	+				+0.6
1,137,684	-				+1.8
1,137,684	-				-0.4
1,137,692	+				+1.7
1,137,693	-				+2.3
1,137,693	-				+0.8
1,137,696	+				-1.7
1,137,697	-				-1.6
1,137,706	+				-2.8
1,137,726	+				+1.5
1,137,726	+				+0.4
1,137,727	-				-0.9
1,137,727	-				-0.7
1,137,727	-				+2.0
1,137,727	-				+0.7
1,137,745	+				-0.3
1,137,746	-				-1.6
1,137,746	-				-0.7
1,137,746	-				+1.3
1,137,746	-				-2.6
1,137,746	-				-2.1
1,137,746	-				-0.3
1,137,769	+				+2.3
1,137,770	-				-1.6
1,137,839	+				-1.7
1,137,840	-				+0.3
1,137,840	-				-0.7
1,137,843	+				-0.3
1,137,844	-				+1.0
1,137,844	-				-0.5
1,137,844	-				-1.1
1,137,844	-				+0.9
1,137,850	+				+1.0
1,137,851	-				-0.7
1,137,872	+				+1.1
1,137,884	+				+2.4
1,137,907	+				-0.2
1,137,907	+				+0.3
1,137,908	-				-0.6
1,137,908	-				-0.7
1,137,924	+				+1.0
1,137,925	-				-0.8
1,137,925	-				-1.1
1,137,987	+				-1.3
1,137,988	-				+0.9
1,138,017	-				+0.8
1,138,074	+				+1.7
1,138,074	+				-0.7
1,138,075	-				-0.3
1,138,075	-				-1.3
1,138,126	+				+0.3
1,138,167	+				-2.3
1,138,198	+				+1.2
1,138,198	+				+0.5
1,138,198	+				-1.6
1,138,198	+				-0.0
1,138,198	+				-1.4
1,138,198	+				-0.5
1,138,199	-				-1.9
1,138,199	-				-1.7
1,138,199	-				+0.3
1,138,206	+				-1.1
1,138,210	+				-0.6
1,138,210	+				-1.6
1,138,211	-				-1.3
1,138,216	+				+0.4
1,138,217	-				-0.7
1,138,217	-				-0.3
1,138,220	+				-2.8
1,138,220	+				-3.4
1,138,220	+				+0.5
1,138,220	+				-0.6
1,138,221	-				-1.9
1,138,238	+				+1.5
1,138,239	-				+1.8
1,138,239	-				+3.7
1,138,294	+				+1.3
1,138,294	+				+1.3
1,138,317	+				+2.5
1,138,318	-				+2.4
1,138,318	-				+1.3
1,138,388	-				-0.7
1,138,452	+				+1.8
1,138,453	-		Sama_0941	0.10	-0.3
1,138,458	+		Sama_0941	0.11	-0.2
1,138,458	+		Sama_0941	0.11	-0.6
1,138,459	-		Sama_0941	0.11	-1.7
1,138,492	-		Sama_0941	0.15	-2.4
1,138,492	-		Sama_0941	0.15	-0.1
1,138,492	-		Sama_0941	0.15	+2.6
1,138,522	+		Sama_0941	0.18	-1.0
1,138,522	+		Sama_0941	0.18	+1.3
1,138,522	+		Sama_0941	0.18	-2.1
1,138,522	+		Sama_0941	0.18	+1.3
1,138,522	+		Sama_0941	0.18	-0.6
1,138,523	-		Sama_0941	0.18	+2.9
1,138,523	-		Sama_0941	0.18	+0.3
1,138,523	-		Sama_0941	0.18	+0.7
1,138,523	-		Sama_0941	0.18	+0.8
1,138,538	+		Sama_0941	0.20	+2.2
1,138,538	+		Sama_0941	0.20	-3.0
1,138,539	-		Sama_0941	0.20	+1.1
1,138,539	-		Sama_0941	0.20	-3.5
1,138,539	-		Sama_0941	0.20	-1.9
1,138,539	-		Sama_0941	0.20	-3.3
1,138,539	-		Sama_0941	0.20	+0.8
1,138,640	+		Sama_0941	0.32	+0.1
1,138,641	-		Sama_0941	0.32	+0.0
1,138,689	+		Sama_0941	0.37	-1.4
1,138,689	+		Sama_0941	0.37	+2.3
1,138,689	+		Sama_0941	0.37	+0.1
1,138,689	+		Sama_0941	0.37	-1.7
1,138,729	-		Sama_0941	0.42	+0.4
1,138,789	-		Sama_0941	0.49	-0.1
1,138,821	+		Sama_0941	0.53	-1.4
1,138,828	+		Sama_0941	0.53	+1.0
1,138,829	-		Sama_0941	0.54	-1.7
1,138,876	+		Sama_0941	0.59	-2.2
1,138,958	+		Sama_0941	0.69	-2.7
1,138,958	+		Sama_0941	0.69	-2.7
1,138,958	+		Sama_0941	0.69	+1.9
1,138,959	-		Sama_0941	0.69	+1.3
1,138,959	-		Sama_0941	0.69	+1.6
1,138,959	-		Sama_0941	0.69	-0.7
1,138,959	-		Sama_0941	0.69	-0.4
1,138,966	+		Sama_0941	0.69	+0.2
1,138,967	-		Sama_0941	0.70	-1.1
1,138,981	+		Sama_0941	0.71	-1.9
1,138,981	+		Sama_0941	0.71	+0.2
1,138,981	+		Sama_0941	0.71	-2.6
1,138,982	-		Sama_0941	0.71	+1.7
1,138,982	-		Sama_0941	0.71	-2.7
1,139,024	+		Sama_0941	0.76	+1.9
1,139,036	+		Sama_0941	0.78	-1.3
1,139,036	+		Sama_0941	0.78	-1.6
1,139,089	-		Sama_0941	0.84	+0.5
1,139,089	-		Sama_0941	0.84	+0.9
1,139,105	-		Sama_0941	0.86	+1.0
1,139,105	-		Sama_0941	0.86	-0.2
1,139,109	+		Sama_0941	0.86	+2.0
1,139,109	+		Sama_0941	0.86	+1.6
1,139,109	+		Sama_0941	0.86	+2.1
1,139,110	-		Sama_0941	0.86	-2.2
1,139,110	-		Sama_0941	0.86	+1.5
1,139,111	+		Sama_0941	0.86	-2.9
1,139,111	+		Sama_0941	0.86	-1.7
1,139,111	+		Sama_0941	0.86	+2.6
1,139,111	+		Sama_0941	0.86	+0.8
1,139,148	+				+1.5
1,139,148	+				+0.1
1,139,148	+				+2.3
1,139,149	-				-0.7
1,139,177	+				-2.3
1,139,192	+				+1.7
1,139,193	-				-1.0
1,139,211	+				+1.2
1,139,211	+				+1.1
1,139,231	+				-0.1
1,139,232	-				+1.4
1,139,234	+				+1.9
1,139,234	+				+2.8
1,139,234	+				-2.1
1,139,234	+				-0.3
1,139,246	+				+1.2
1,139,246	+				+1.3
1,139,246	+				+2.6
1,139,247	-				+0.7
1,139,405	+		Sama_0942	0.12	-0.9
1,139,405	+		Sama_0942	0.12	+2.0
1,139,405	+		Sama_0942	0.12	+1.3
1,139,406	-		Sama_0942	0.12	-0.3
1,139,410	-		Sama_0942	0.12	-2.3
1,139,425	+		Sama_0942	0.13	-0.1
1,139,425	+		Sama_0942	0.13	+1.3
1,139,558	+		Sama_0942	0.22	+0.6
1,139,559	-		Sama_0942	0.22	-0.2
1,139,559	-		Sama_0942	0.22	+1.3
1,139,565	-		Sama_0942	0.23	-1.6
1,139,606	+		Sama_0942	0.26	+0.5
1,139,607	-		Sama_0942	0.26	+2.7
1,139,687	+		Sama_0942	0.31	+0.3
1,139,688	-		Sama_0942	0.31	-1.3
1,139,688	-		Sama_0942	0.31	+1.3
1,139,705	+		Sama_0942	0.32	-0.5
1,139,705	+		Sama_0942	0.32	+0.5
1,139,705	+		Sama_0942	0.32	-2.9
1,139,706	-		Sama_0942	0.32	+2.6
1,139,706	-		Sama_0942	0.32	-0.7
1,139,706	-		Sama_0942	0.32	-0.2
1,139,706	-		Sama_0942	0.32	-0.3
1,139,706	-		Sama_0942	0.32	+0.4
1,139,727	-		Sama_0942	0.34	-0.9
1,139,764	+		Sama_0942	0.36	-0.7
1,139,764	+		Sama_0942	0.36	-2.8
1,139,764	+		Sama_0942	0.36	-0.4
1,139,764	+		Sama_0942	0.36	-1.9
1,139,765	-		Sama_0942	0.36	+0.3
1,139,765	-		Sama_0942	0.36	+0.8
1,139,852	+		Sama_0942	0.42	+0.3
1,139,876	-		Sama_0942	0.44	-1.9
1,139,948	+		Sama_0942	0.49	-1.7
1,139,948	+		Sama_0942	0.49	+0.9
1,140,038	+		Sama_0942	0.55	-0.7
1,140,039	-		Sama_0942	0.55	+2.0
1,140,039	-		Sama_0942	0.55	-0.9
1,140,051	-		Sama_0942	0.55	-0.3
1,140,051	-		Sama_0942	0.55	+2.5
1,140,163	+		Sama_0942	0.63	+0.9
1,140,164	-		Sama_0942	0.63	+3.1
1,140,166	-		Sama_0942	0.63	-1.3
1,140,170	-		Sama_0942	0.63	+1.3
1,140,211	+		Sama_0942	0.66	-1.6
1,140,212	-		Sama_0942	0.66	-0.9
1,140,212	-		Sama_0942	0.66	-0.3
1,140,221	+		Sama_0942	0.67	+1.0