Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0688 and Sama_0689 are separated by 58 nucleotides Sama_0689 and Sama_0690 are separated by 100 nucleotides Sama_0690 and Sama_0691 overlap by 4 nucleotides
Sama_0688: Sama_0688 - peptidase M24 (RefSeq), at 852,263 to 853,474
_0688
Sama_0689: Sama_0689 - peptidyl-prolyl cis-trans isomerase, FKBP-type (RefSeq), at 853,533 to 854,003
_0689
Sama_0690: Sama_0690 - cold shock DNA-binding domain-containing protein (RefSeq), at 854,104 to 854,457
_0690
Sama_0691: Sama_0691 - hypothetical protein (RefSeq), at 854,454 to 855,599
_0691
Position (kb) 854
855 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 853.255 kb on + strand, within Sama_0688 at 853.269 kb on + strand, within Sama_0688 at 853.269 kb on + strand, within Sama_0688 at 853.269 kb on + strand, within Sama_0688 at 853.270 kb on - strand, within Sama_0688 at 853.270 kb on - strand, within Sama_0688 at 853.279 kb on + strand, within Sama_0688 at 853.296 kb on - strand, within Sama_0688 at 853.315 kb on + strand, within Sama_0688 at 853.315 kb on + strand, within Sama_0688 at 853.315 kb on + strand, within Sama_0688 at 853.315 kb on + strand, within Sama_0688 at 853.315 kb on + strand, within Sama_0688 at 853.315 kb on + strand, within Sama_0688 at 853.315 kb on + strand, within Sama_0688 at 853.316 kb on - strand, within Sama_0688 at 853.316 kb on - strand, within Sama_0688 at 853.316 kb on - strand, within Sama_0688 at 853.316 kb on - strand, within Sama_0688 at 853.316 kb on - strand, within Sama_0688 at 853.383 kb on + strand at 853.403 kb on + strand at 853.403 kb on + strand at 853.403 kb on + strand at 853.403 kb on + strand at 853.403 kb on + strand at 853.403 kb on + strand at 853.403 kb on + strand at 853.403 kb on + strand at 853.403 kb on + strand at 853.404 kb on - strand at 853.404 kb on - strand at 853.404 kb on - strand at 853.404 kb on - strand at 853.404 kb on - strand at 853.404 kb on - strand at 853.472 kb on + strand at 853.472 kb on + strand at 853.472 kb on + strand at 853.473 kb on - strand at 853.473 kb on - strand at 853.473 kb on - strand at 853.473 kb on - strand at 853.545 kb on + strand at 853.546 kb on - strand at 853.546 kb on - strand at 853.594 kb on - strand, within Sama_0689 at 853.610 kb on - strand, within Sama_0689 at 853.688 kb on + strand, within Sama_0689 at 853.771 kb on + strand, within Sama_0689 at 853.771 kb on + strand, within Sama_0689 at 853.837 kb on + strand, within Sama_0689 at 853.837 kb on + strand, within Sama_0689 at 853.837 kb on + strand, within Sama_0689 at 853.838 kb on - strand, within Sama_0689 at 853.863 kb on + strand, within Sama_0689 at 853.863 kb on + strand, within Sama_0689 at 853.863 kb on + strand, within Sama_0689 at 853.863 kb on + strand, within Sama_0689 at 853.864 kb on - strand, within Sama_0689 at 853.864 kb on - strand, within Sama_0689 at 853.864 kb on - strand, within Sama_0689 at 853.864 kb on - strand, within Sama_0689 at 853.937 kb on + strand, within Sama_0689 at 853.982 kb on + strand at 853.982 kb on + strand at 853.982 kb on + strand at 853.983 kb on - strand at 854.040 kb on + strand at 854.041 kb on - strand at 854.041 kb on - strand at 854.041 kb on - strand at 854.052 kb on + strand at 854.052 kb on + strand at 854.052 kb on + strand at 854.053 kb on - strand at 854.053 kb on - strand at 854.053 kb on - strand at 854.057 kb on + strand at 854.057 kb on + strand at 854.058 kb on - strand at 854.058 kb on - strand at 854.064 kb on - strand at 854.064 kb on - strand at 854.064 kb on - strand at 854.105 kb on + strand at 854.106 kb on - strand at 854.135 kb on + strand at 854.136 kb on - strand at 854.136 kb on - strand at 854.136 kb on - strand at 854.136 kb on - strand at 854.138 kb on + strand at 854.184 kb on - strand, within Sama_0690 at 854.208 kb on + strand, within Sama_0690 at 854.314 kb on + strand, within Sama_0690 at 854.315 kb on - strand, within Sama_0690 at 854.372 kb on + strand, within Sama_0690 at 854.377 kb on + strand, within Sama_0690 at 854.377 kb on + strand, within Sama_0690 at 854.377 kb on + strand, within Sama_0690 at 854.377 kb on + strand, within Sama_0690 at 854.378 kb on - strand, within Sama_0690 at 854.378 kb on - strand, within Sama_0690 at 854.378 kb on - strand, within Sama_0690 at 854.378 kb on - strand, within Sama_0690 at 854.378 kb on - strand, within Sama_0690 at 854.378 kb on - strand, within Sama_0690 at 854.432 kb on + strand at 854.432 kb on + strand at 854.432 kb on + strand at 854.432 kb on + strand at 854.433 kb on - strand at 854.451 kb on + strand at 854.451 kb on + strand at 854.451 kb on + strand at 854.451 kb on + strand at 854.452 kb on - strand at 854.452 kb on - strand at 854.463 kb on + strand at 854.474 kb on + strand at 854.475 kb on - strand at 854.510 kb on - strand at 854.517 kb on + strand at 854.517 kb on + strand at 854.517 kb on + strand at 854.517 kb on + strand at 854.518 kb on - strand at 854.518 kb on - strand at 854.540 kb on + strand at 854.555 kb on - strand at 854.555 kb on - strand at 854.571 kb on + strand, within Sama_0691 at 854.571 kb on + strand, within Sama_0691 at 854.571 kb on + strand, within Sama_0691 at 854.571 kb on + strand, within Sama_0691 at 854.572 kb on - strand, within Sama_0691 at 854.608 kb on + strand, within Sama_0691 at 854.608 kb on + strand, within Sama_0691 at 854.609 kb on - strand, within Sama_0691 at 854.609 kb on - strand, within Sama_0691 at 854.762 kb on + strand, within Sama_0691 at 854.777 kb on - strand, within Sama_0691 at 854.805 kb on + strand, within Sama_0691 at 854.805 kb on + strand, within Sama_0691 at 854.855 kb on - strand, within Sama_0691 at 854.862 kb on + strand, within Sama_0691 at 854.862 kb on + strand, within Sama_0691 at 854.863 kb on - strand, within Sama_0691 at 854.863 kb on - strand, within Sama_0691 at 854.863 kb on - strand, within Sama_0691 at 854.863 kb on - strand, within Sama_0691 at 854.863 kb on - strand, within Sama_0691 at 854.898 kb on + strand, within Sama_0691 at 854.950 kb on + strand, within Sama_0691 at 854.956 kb on + strand, within Sama_0691 at 854.956 kb on + strand, within Sama_0691 at 854.956 kb on + strand, within Sama_0691 at 854.956 kb on + strand, within Sama_0691 at 854.956 kb on + strand, within Sama_0691 at 854.956 kb on + strand, within Sama_0691 at 854.956 kb on + strand, within Sama_0691 at 854.956 kb on + strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.986 kb on + strand, within Sama_0691 at 854.986 kb on + strand, within Sama_0691 at 854.986 kb on + strand, within Sama_0691 at 854.987 kb on - strand, within Sama_0691 at 855.064 kb on + strand, within Sama_0691 at 855.065 kb on - strand, within Sama_0691 at 855.097 kb on + strand, within Sama_0691 at 855.162 kb on + strand, within Sama_0691 at 855.162 kb on + strand, within Sama_0691 at 855.163 kb on - strand, within Sama_0691 at 855.163 kb on - strand, within Sama_0691 at 855.163 kb on - strand, within Sama_0691 at 855.163 kb on - strand, within Sama_0691 at 855.204 kb on - strand, within Sama_0691 at 855.204 kb on - strand, within Sama_0691 at 855.227 kb on - strand, within Sama_0691 at 855.227 kb on - strand, within Sama_0691 at 855.256 kb on + strand, within Sama_0691 at 855.257 kb on - strand, within Sama_0691 at 855.257 kb on - strand, within Sama_0691 at 855.257 kb on - strand, within Sama_0691 at 855.257 kb on - strand, within Sama_0691 at 855.284 kb on + strand, within Sama_0691 at 855.285 kb on - strand, within Sama_0691 at 855.285 kb on - strand, within Sama_0691 at 855.288 kb on + strand, within Sama_0691 at 855.288 kb on + strand, within Sama_0691 at 855.289 kb on - strand, within Sama_0691 at 855.289 kb on - strand, within Sama_0691 at 855.323 kb on + strand, within Sama_0691 at 855.324 kb on - strand, within Sama_0691 at 855.335 kb on + strand, within Sama_0691 at 855.398 kb on + strand, within Sama_0691 at 855.399 kb on - strand, within Sama_0691 at 855.410 kb on + strand, within Sama_0691 at 855.411 kb on - strand, within Sama_0691
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 853,255 + Sama_0688 0.82 -0.3 853,269 + Sama_0688 0.83 -1.0 853,269 + Sama_0688 0.83 +1.8 853,269 + Sama_0688 0.83 +1.1 853,270 - Sama_0688 0.83 -0.1 853,270 - Sama_0688 0.83 -1.0 853,279 + Sama_0688 0.84 +0.1 853,296 - Sama_0688 0.85 -0.4 853,315 + Sama_0688 0.87 -1.2 853,315 + Sama_0688 0.87 +2.6 853,315 + Sama_0688 0.87 -2.6 853,315 + Sama_0688 0.87 -2.2 853,315 + Sama_0688 0.87 +1.1 853,315 + Sama_0688 0.87 +1.3 853,315 + Sama_0688 0.87 +0.3 853,316 - Sama_0688 0.87 +1.0 853,316 - Sama_0688 0.87 +0.5 853,316 - Sama_0688 0.87 +0.1 853,316 - Sama_0688 0.87 +0.3 853,316 - Sama_0688 0.87 -3.0 853,383 + +1.7 853,403 + -0.9 853,403 + -0.4 853,403 + -3.1 853,403 + +0.8 853,403 + +0.7 853,403 + -0.2 853,403 + -0.2 853,403 + -3.2 853,403 + +0.0 853,404 - -0.1 853,404 - +0.8 853,404 - -1.8 853,404 - +0.3 853,404 - +0.8 853,404 - +2.7 853,472 + -0.8 853,472 + +1.5 853,472 + -1.2 853,473 - +1.6 853,473 - +2.0 853,473 - +1.9 853,473 - +0.9 853,545 + -1.0 853,546 - -1.5 853,546 - +0.8 853,594 - Sama_0689 0.13 +2.3 853,610 - Sama_0689 0.16 -0.0 853,688 + Sama_0689 0.33 +0.6 853,771 + Sama_0689 0.51 +1.2 853,771 + Sama_0689 0.51 -1.5 853,837 + Sama_0689 0.65 +0.3 853,837 + Sama_0689 0.65 +2.0 853,837 + Sama_0689 0.65 -1.7 853,838 - Sama_0689 0.65 -1.8 853,863 + Sama_0689 0.70 +1.0 853,863 + Sama_0689 0.70 -1.0 853,863 + Sama_0689 0.70 +0.9 853,863 + Sama_0689 0.70 -3.1 853,864 - Sama_0689 0.70 +1.2 853,864 - Sama_0689 0.70 -1.6 853,864 - Sama_0689 0.70 +0.6 853,864 - Sama_0689 0.70 -2.2 853,937 + Sama_0689 0.86 -0.4 853,982 + -1.7 853,982 + +1.3 853,982 + -0.8 853,983 - +0.8 854,040 + -2.4 854,041 - -1.5 854,041 - -1.0 854,041 - -3.9 854,052 + -0.7 854,052 + +0.4 854,052 + -0.7 854,053 - -2.4 854,053 - +1.3 854,053 - +0.3 854,057 + -1.0 854,057 + -2.1 854,058 - -0.2 854,058 - -2.8 854,064 - +0.7 854,064 - +2.6 854,064 - -0.3 854,105 + +1.6 854,106 - +2.7 854,135 + +0.2 854,136 - -2.6 854,136 - -1.3 854,136 - +1.1 854,136 - -1.6 854,138 + -0.8 854,184 - Sama_0690 0.23 -1.1 854,208 + Sama_0690 0.29 -1.3 854,314 + Sama_0690 0.59 -1.0 854,315 - Sama_0690 0.60 +1.4 854,372 + Sama_0690 0.76 +0.3 854,377 + Sama_0690 0.77 -1.1 854,377 + Sama_0690 0.77 +0.3 854,377 + Sama_0690 0.77 -1.2 854,377 + Sama_0690 0.77 +1.3 854,378 - Sama_0690 0.77 +0.4 854,378 - Sama_0690 0.77 +1.2 854,378 - Sama_0690 0.77 -0.7 854,378 - Sama_0690 0.77 -0.3 854,378 - Sama_0690 0.77 -0.6 854,378 - Sama_0690 0.77 -2.7 854,432 + -1.3 854,432 + -1.5 854,432 + -0.7 854,432 + -1.1 854,433 - +0.4 854,451 + +0.3 854,451 + -0.7 854,451 + +2.3 854,451 + +2.0 854,452 - -3.6 854,452 - -1.6 854,463 + -1.7 854,474 + +1.9 854,475 - -0.7 854,510 - +0.3 854,517 + +1.6 854,517 + +0.3 854,517 + -1.3 854,517 + -0.3 854,518 - -1.1 854,518 - -1.0 854,540 + +0.1 854,555 - +0.8 854,555 - +1.3 854,571 + Sama_0691 0.10 -1.5 854,571 + Sama_0691 0.10 +0.3 854,571 + Sama_0691 0.10 +0.7 854,571 + Sama_0691 0.10 -2.6 854,572 - Sama_0691 0.10 +0.3 854,608 + Sama_0691 0.13 +1.0 854,608 + Sama_0691 0.13 -0.3 854,609 - Sama_0691 0.14 -0.7 854,609 - Sama_0691 0.14 +0.6 854,762 + Sama_0691 0.27 -0.7 854,777 - Sama_0691 0.28 +0.3 854,805 + Sama_0691 0.31 +1.1 854,805 + Sama_0691 0.31 +3.3 854,855 - Sama_0691 0.35 -1.0 854,862 + Sama_0691 0.36 -0.7 854,862 + Sama_0691 0.36 -0.4 854,863 - Sama_0691 0.36 -1.6 854,863 - Sama_0691 0.36 -1.1 854,863 - Sama_0691 0.36 -2.7 854,863 - Sama_0691 0.36 -2.9 854,863 - Sama_0691 0.36 -0.3 854,898 + Sama_0691 0.39 -1.5 854,950 + Sama_0691 0.43 -0.1 854,956 + Sama_0691 0.44 +0.3 854,956 + Sama_0691 0.44 -0.1 854,956 + Sama_0691 0.44 +1.3 854,956 + Sama_0691 0.44 -0.3 854,956 + Sama_0691 0.44 +2.4 854,956 + Sama_0691 0.44 -0.3 854,956 + Sama_0691 0.44 -0.6 854,956 + Sama_0691 0.44 -2.1 854,957 - Sama_0691 0.44 +1.4 854,957 - Sama_0691 0.44 -1.0 854,957 - Sama_0691 0.44 +1.6 854,957 - Sama_0691 0.44 -2.4 854,957 - Sama_0691 0.44 -0.8 854,957 - Sama_0691 0.44 -2.1 854,957 - Sama_0691 0.44 -0.8 854,957 - Sama_0691 0.44 +0.5 854,957 - Sama_0691 0.44 -0.5 854,957 - Sama_0691 0.44 +1.3 854,957 - Sama_0691 0.44 +0.6 854,957 - Sama_0691 0.44 -0.5 854,957 - Sama_0691 0.44 -0.9 854,957 - Sama_0691 0.44 +2.7 854,957 - Sama_0691 0.44 +0.2 854,986 + Sama_0691 0.46 -1.3 854,986 + Sama_0691 0.46 +0.7 854,986 + Sama_0691 0.46 +2.2 854,987 - Sama_0691 0.47 -1.8 855,064 + Sama_0691 0.53 -1.5 855,065 - Sama_0691 0.53 +1.7 855,097 + Sama_0691 0.56 -1.3 855,162 + Sama_0691 0.62 -1.3 855,162 + Sama_0691 0.62 +0.6 855,163 - Sama_0691 0.62 -2.9 855,163 - Sama_0691 0.62 +0.9 855,163 - Sama_0691 0.62 -1.5 855,163 - Sama_0691 0.62 +2.0 855,204 - Sama_0691 0.65 +3.1 855,204 - Sama_0691 0.65 -1.3 855,227 - Sama_0691 0.67 -0.7 855,227 - Sama_0691 0.67 +0.8 855,256 + Sama_0691 0.70 +3.4 855,257 - Sama_0691 0.70 +0.6 855,257 - Sama_0691 0.70 -0.2 855,257 - Sama_0691 0.70 +0.3 855,257 - Sama_0691 0.70 -0.5 855,284 + Sama_0691 0.72 -1.0 855,285 - Sama_0691 0.73 -0.7 855,285 - Sama_0691 0.73 +1.3 855,288 + Sama_0691 0.73 +0.3 855,288 + Sama_0691 0.73 -0.5 855,289 - Sama_0691 0.73 +2.0 855,289 - Sama_0691 0.73 -1.5 855,323 + Sama_0691 0.76 -2.9 855,324 - Sama_0691 0.76 -1.6 855,335 + Sama_0691 0.77 -1.3 855,398 + Sama_0691 0.82 -0.3 855,399 - Sama_0691 0.82 -0.2 855,410 + Sama_0691 0.83 -0.8 855,411 - Sama_0691 0.84 -0.7
Or see this region's nucleotide sequence