Strain Fitness in Shewanella amazonensis SB2B around Sama_0593

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0592 and Sama_0593 overlap by 1 nucleotidesSama_0593 and Sama_0594 overlap by 4 nucleotides Sama_0592: Sama_0592 - smc-like chromosome partitioning protein (DUF3584) (from data), at 739,679 to 743,359 _0592 Sama_0593: Sama_0593 - predicted chromosome partitioning protein (with smc-like Sama_0592) (from data), at 743,359 to 744,024 _0593 Sama_0594: Sama_0594 - predicted chromosome partitioning protein (with smc-like Sama_0592) (from data), at 744,021 to 745,241 _0594 Position (kb) 743 744 745Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 742.362 kb on + strand, within Sama_0592at 742.409 kb on + strand, within Sama_0592at 742.410 kb on - strand, within Sama_0592at 742.433 kb on + strand, within Sama_0592at 742.433 kb on + strand, within Sama_0592at 742.433 kb on + strand, within Sama_0592at 742.433 kb on + strand, within Sama_0592at 742.433 kb on + strand, within Sama_0592at 742.434 kb on - strand, within Sama_0592at 742.434 kb on - strand, within Sama_0592at 742.434 kb on - strand, within Sama_0592at 742.434 kb on - strand, within Sama_0592at 742.434 kb on - strand, within Sama_0592at 742.434 kb on - strand, within Sama_0592at 742.437 kb on + strand, within Sama_0592at 742.437 kb on + strand, within Sama_0592at 742.437 kb on + strand, within Sama_0592at 742.438 kb on - strand, within Sama_0592at 742.438 kb on - strand, within Sama_0592at 742.438 kb on - strand, within Sama_0592at 742.543 kb on + strand, within Sama_0592at 742.543 kb on + strand, within Sama_0592at 742.613 kb on - strand, within Sama_0592at 742.665 kb on - strand, within Sama_0592at 742.770 kb on + strand, within Sama_0592at 742.770 kb on + strand, within Sama_0592at 742.774 kb on + strand, within Sama_0592at 742.883 kb on + strand, within Sama_0592at 742.883 kb on + strand, within Sama_0592at 742.883 kb on + strand, within Sama_0592at 742.883 kb on + strand, within Sama_0592at 742.883 kb on + strand, within Sama_0592at 742.883 kb on + strand, within Sama_0592at 743.042 kb on - strandat 743.048 kb on + strandat 743.049 kb on - strandat 743.049 kb on - strandat 743.063 kb on - strandat 743.081 kb on - strandat 743.194 kb on + strandat 743.194 kb on + strandat 743.194 kb on + strandat 743.194 kb on + strandat 743.194 kb on + strandat 743.194 kb on + strandat 743.194 kb on + strandat 743.195 kb on - strandat 743.195 kb on - strandat 743.195 kb on - strandat 743.195 kb on - strandat 743.259 kb on - strandat 743.260 kb on + strandat 743.260 kb on + strandat 743.260 kb on + strandat 743.260 kb on + strandat 743.260 kb on + strandat 743.260 kb on + strandat 743.260 kb on + strandat 743.261 kb on - strandat 743.261 kb on - strandat 743.261 kb on - strandat 743.261 kb on - strandat 743.261 kb on - strandat 743.339 kb on - strandat 743.357 kb on + strandat 743.357 kb on + strandat 743.357 kb on + strandat 743.357 kb on + strandat 743.357 kb on + strandat 743.443 kb on - strand, within Sama_0593at 743.505 kb on + strand, within Sama_0593at 743.515 kb on + strand, within Sama_0593at 743.578 kb on + strand, within Sama_0593at 743.631 kb on + strand, within Sama_0593at 743.631 kb on + strand, within Sama_0593at 743.632 kb on - strand, within Sama_0593at 743.823 kb on + strand, within Sama_0593at 743.823 kb on + strand, within Sama_0593at 743.823 kb on + strand, within Sama_0593at 743.823 kb on + strand, within Sama_0593at 743.841 kb on + strand, within Sama_0593at 743.841 kb on + strand, within Sama_0593at 743.841 kb on + strand, within Sama_0593at 743.841 kb on + strand, within Sama_0593at 743.842 kb on - strand, within Sama_0593at 743.842 kb on - strand, within Sama_0593at 743.881 kb on - strand, within Sama_0593at 743.909 kb on - strand, within Sama_0593at 743.932 kb on + strand, within Sama_0593at 743.932 kb on + strand, within Sama_0593at 743.932 kb on + strand, within Sama_0593at 743.932 kb on + strand, within Sama_0593at 743.932 kb on + strand, within Sama_0593at 743.933 kb on - strand, within Sama_0593at 744.020 kb on + strandat 744.020 kb on + strandat 744.021 kb on - strandat 744.099 kb on + strandat 744.099 kb on + strandat 744.099 kb on + strandat 744.100 kb on - strandat 744.100 kb on - strandat 744.199 kb on + strand, within Sama_0594at 744.242 kb on + strand, within Sama_0594at 744.243 kb on - strand, within Sama_0594at 744.266 kb on + strand, within Sama_0594at 744.277 kb on + strand, within Sama_0594at 744.277 kb on + strand, within Sama_0594at 744.277 kb on + strand, within Sama_0594at 744.277 kb on + strand, within Sama_0594at 744.277 kb on + strand, within Sama_0594at 744.278 kb on - strand, within Sama_0594at 744.278 kb on - strand, within Sama_0594at 744.318 kb on + strand, within Sama_0594at 744.318 kb on + strand, within Sama_0594at 744.318 kb on + strand, within Sama_0594at 744.318 kb on + strand, within Sama_0594at 744.319 kb on - strand, within Sama_0594at 744.319 kb on - strand, within Sama_0594at 744.319 kb on - strand, within Sama_0594at 744.320 kb on + strand, within Sama_0594at 744.320 kb on + strand, within Sama_0594at 744.320 kb on + strand, within Sama_0594at 744.320 kb on + strand, within Sama_0594at 744.320 kb on + strand, within Sama_0594at 744.320 kb on + strand, within Sama_0594at 744.320 kb on + strand, within Sama_0594at 744.320 kb on + strand, within Sama_0594at 744.321 kb on - strand, within Sama_0594at 744.321 kb on - strand, within Sama_0594at 744.321 kb on - strand, within Sama_0594at 744.345 kb on + strand, within Sama_0594at 744.345 kb on + strand, within Sama_0594at 744.345 kb on + strand, within Sama_0594at 744.346 kb on - strand, within Sama_0594at 744.363 kb on + strand, within Sama_0594at 744.364 kb on - strand, within Sama_0594at 744.390 kb on + strand, within Sama_0594at 744.391 kb on - strand, within Sama_0594at 744.391 kb on - strand, within Sama_0594at 744.391 kb on - strand, within Sama_0594at 744.391 kb on - strand, within Sama_0594at 744.443 kb on + strand, within Sama_0594at 744.460 kb on - strand, within Sama_0594at 744.578 kb on + strand, within Sama_0594at 744.604 kb on + strand, within Sama_0594at 744.605 kb on - strand, within Sama_0594at 744.635 kb on + strand, within Sama_0594at 744.635 kb on + strand, within Sama_0594at 744.636 kb on - strand, within Sama_0594at 744.636 kb on - strand, within Sama_0594at 744.636 kb on - strand, within Sama_0594at 744.636 kb on - strand, within Sama_0594at 744.636 kb on - strand, within Sama_0594at 744.636 kb on - strand, within Sama_0594at 744.707 kb on + strand, within Sama_0594at 744.735 kb on + strand, within Sama_0594at 744.736 kb on - strand, within Sama_0594at 744.743 kb on + strand, within Sama_0594at 744.743 kb on + strand, within Sama_0594at 744.743 kb on + strand, within Sama_0594at 744.743 kb on + strand, within Sama_0594at 744.744 kb on - strand, within Sama_0594at 744.744 kb on - strand, within Sama_0594at 744.744 kb on - strand, within Sama_0594at 744.744 kb on - strand, within Sama_0594at 744.744 kb on - strand, within Sama_0594at 744.744 kb on - strand, within Sama_0594at 744.756 kb on + strand, within Sama_0594at 744.756 kb on + strand, within Sama_0594at 744.757 kb on - strand, within Sama_0594at 744.803 kb on + strand, within Sama_0594at 744.849 kb on - strand, within Sama_0594at 744.916 kb on + strand, within Sama_0594at 744.916 kb on + strand, within Sama_0594at 744.916 kb on + strand, within Sama_0594at 744.916 kb on + strand, within Sama_0594at 744.917 kb on - strand, within Sama_0594at 744.917 kb on - strand, within Sama_0594at 744.978 kb on - strand, within Sama_0594at 745.014 kb on + strand, within Sama_0594at 745.014 kb on + strand, within Sama_0594at 745.015 kb on - strand, within Sama_0594at 745.015 kb on - strand, within Sama_0594at 745.015 kb on - strand, within Sama_0594

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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742,362 + Sama_0592 0.73 -2.5
742,409 + Sama_0592 0.74 -2.2
742,410 - Sama_0592 0.74 -1.9
742,433 + Sama_0592 0.75 -3.6
742,433 + Sama_0592 0.75 +1.8
742,433 + Sama_0592 0.75 +0.9
742,433 + Sama_0592 0.75 -2.1
742,433 + Sama_0592 0.75 -1.5
742,434 - Sama_0592 0.75 -1.8
742,434 - Sama_0592 0.75 -1.5
742,434 - Sama_0592 0.75 -0.3
742,434 - Sama_0592 0.75 -0.5
742,434 - Sama_0592 0.75 -0.6
742,434 - Sama_0592 0.75 -3.4
742,437 + Sama_0592 0.75 -2.0
742,437 + Sama_0592 0.75 +1.4
742,437 + Sama_0592 0.75 -1.0
742,438 - Sama_0592 0.75 -1.2
742,438 - Sama_0592 0.75 -3.2
742,438 - Sama_0592 0.75 -1.0
742,543 + Sama_0592 0.78 -1.6
742,543 + Sama_0592 0.78 -0.6
742,613 - Sama_0592 0.80 -2.2
742,665 - Sama_0592 0.81 -3.3
742,770 + Sama_0592 0.84 -1.6
742,770 + Sama_0592 0.84 -1.6
742,774 + Sama_0592 0.84 -2.9
742,883 + Sama_0592 0.87 -2.3
742,883 + Sama_0592 0.87 -1.0
742,883 + Sama_0592 0.87 -2.8
742,883 + Sama_0592 0.87 -2.2
742,883 + Sama_0592 0.87 -0.6
742,883 + Sama_0592 0.87 -2.6
743,042 - -1.2
743,048 + -2.9
743,049 - -0.2
743,049 - -2.1
743,063 - -2.0
743,081 - -1.2
743,194 + -4.0
743,194 + -0.7
743,194 + -3.0
743,194 + -3.5
743,194 + -1.2
743,194 + -2.1
743,194 + -1.6
743,195 - -2.8
743,195 - -3.0
743,195 - -0.9
743,195 - -2.6
743,259 - -2.0
743,260 + -1.6
743,260 + -1.3
743,260 + -1.2
743,260 + -1.2
743,260 + +0.0
743,260 + -2.5
743,260 + -3.5
743,261 - -1.2
743,261 - -2.5
743,261 - -2.5
743,261 - -2.7
743,261 - -1.6
743,339 - -0.5
743,357 + -0.8
743,357 + -0.6
743,357 + +1.6
743,357 + -1.5
743,357 + -0.2
743,443 - Sama_0593 0.13 -0.2
743,505 + Sama_0593 0.22 -1.3
743,515 + Sama_0593 0.23 -0.9
743,578 + Sama_0593 0.33 -2.1
743,631 + Sama_0593 0.41 -1.9
743,631 + Sama_0593 0.41 -2.1
743,632 - Sama_0593 0.41 -0.7
743,823 + Sama_0593 0.70 -2.1
743,823 + Sama_0593 0.70 -2.3
743,823 + Sama_0593 0.70 -2.1
743,823 + Sama_0593 0.70 -1.6
743,841 + Sama_0593 0.72 -2.6
743,841 + Sama_0593 0.72 -2.5
743,841 + Sama_0593 0.72 -3.8
743,841 + Sama_0593 0.72 -2.9
743,842 - Sama_0593 0.73 -1.2
743,842 - Sama_0593 0.73 -0.5
743,881 - Sama_0593 0.78 +2.4
743,909 - Sama_0593 0.83 -0.4
743,932 + Sama_0593 0.86 -2.6
743,932 + Sama_0593 0.86 -2.3
743,932 + Sama_0593 0.86 -2.7
743,932 + Sama_0593 0.86 -2.1
743,932 + Sama_0593 0.86 -3.3
743,933 - Sama_0593 0.86 -2.3
744,020 + -0.2
744,020 + +2.9
744,021 - +3.2
744,099 + -1.2
744,099 + -0.4
744,099 + -2.5
744,100 - -0.2
744,100 - -4.2
744,199 + Sama_0594 0.15 -0.6
744,242 + Sama_0594 0.18 -3.6
744,243 - Sama_0594 0.18 -0.7
744,266 + Sama_0594 0.20 -2.2
744,277 + Sama_0594 0.21 -1.3
744,277 + Sama_0594 0.21 -1.7
744,277 + Sama_0594 0.21 -2.3
744,277 + Sama_0594 0.21 -1.2
744,277 + Sama_0594 0.21 -2.1
744,278 - Sama_0594 0.21 -1.2
744,278 - Sama_0594 0.21 -3.1
744,318 + Sama_0594 0.24 -2.5
744,318 + Sama_0594 0.24 -1.9
744,318 + Sama_0594 0.24 -1.0
744,318 + Sama_0594 0.24 -2.0
744,319 - Sama_0594 0.24 -0.1
744,319 - Sama_0594 0.24 -0.6
744,319 - Sama_0594 0.24 -0.9
744,320 + Sama_0594 0.24 -1.6
744,320 + Sama_0594 0.24 -2.3
744,320 + Sama_0594 0.24 -1.2
744,320 + Sama_0594 0.24 -3.3
744,320 + Sama_0594 0.24 -2.3
744,320 + Sama_0594 0.24 -1.6
744,320 + Sama_0594 0.24 +1.4
744,320 + Sama_0594 0.24 -2.3
744,321 - Sama_0594 0.25 -2.7
744,321 - Sama_0594 0.25 -2.8
744,321 - Sama_0594 0.25 -2.2
744,345 + Sama_0594 0.27 +0.1
744,345 + Sama_0594 0.27 -1.5
744,345 + Sama_0594 0.27 -2.2
744,346 - Sama_0594 0.27 -1.3
744,363 + Sama_0594 0.28 +0.7
744,364 - Sama_0594 0.28 -1.6
744,390 + Sama_0594 0.30 -4.3
744,391 - Sama_0594 0.30 -0.2
744,391 - Sama_0594 0.30 -0.6
744,391 - Sama_0594 0.30 +1.0
744,391 - Sama_0594 0.30 -3.9
744,443 + Sama_0594 0.35 -1.7
744,460 - Sama_0594 0.36 -0.2
744,578 + Sama_0594 0.46 -0.2
744,604 + Sama_0594 0.48 -1.5
744,605 - Sama_0594 0.48 +1.4
744,635 + Sama_0594 0.50 -0.5
744,635 + Sama_0594 0.50 -1.6
744,636 - Sama_0594 0.50 +1.5
744,636 - Sama_0594 0.50 -2.6
744,636 - Sama_0594 0.50 -2.0
744,636 - Sama_0594 0.50 -2.7
744,636 - Sama_0594 0.50 -2.6
744,636 - Sama_0594 0.50 -2.0
744,707 + Sama_0594 0.56 -2.5
744,735 + Sama_0594 0.58 -2.6
744,736 - Sama_0594 0.59 -2.1
744,743 + Sama_0594 0.59 -2.9
744,743 + Sama_0594 0.59 -0.6
744,743 + Sama_0594 0.59 -2.2
744,743 + Sama_0594 0.59 -1.9
744,744 - Sama_0594 0.59 -2.7
744,744 - Sama_0594 0.59 -0.5
744,744 - Sama_0594 0.59 -2.9
744,744 - Sama_0594 0.59 -2.7
744,744 - Sama_0594 0.59 -0.2
744,744 - Sama_0594 0.59 -1.8
744,756 + Sama_0594 0.60 -1.5
744,756 + Sama_0594 0.60 -2.5
744,757 - Sama_0594 0.60 -0.6
744,803 + Sama_0594 0.64 -2.4
744,849 - Sama_0594 0.68 -1.2
744,916 + Sama_0594 0.73 -2.1
744,916 + Sama_0594 0.73 -2.0
744,916 + Sama_0594 0.73 -2.2
744,916 + Sama_0594 0.73 +1.4
744,917 - Sama_0594 0.73 +1.4
744,917 - Sama_0594 0.73 +0.9
744,978 - Sama_0594 0.78 -2.1
745,014 + Sama_0594 0.81 -0.2
745,014 + Sama_0594 0.81 -0.6
745,015 - Sama_0594 0.81 -1.7
745,015 - Sama_0594 0.81 -1.0
745,015 - Sama_0594 0.81 -0.5

Or see this region's nucleotide sequence