Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0445 and Sama_0446 are separated by 110 nucleotides Sama_0446 and rpmE are separated by 147 nucleotides rpmE and Sama_0448 are separated by 502 nucleotides
Sama_0445: Sama_0445 - primosomal protein N' (RefSeq), at 549,686 to 551,893
_0445
Sama_0446: Sama_0446 - hypothetical protein (RefSeq), at 552,004 to 552,729
_0446
Sama_0447: rpmE - 50S ribosomal protein L31 (RefSeq), at 552,877 to 553,089
rpmE
Sama_0448: Sama_0448 - malate dehydrogenase (RefSeq), at 553,592 to 554,839
_0448
Position (kb) 552
553
554 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 551.882 kb on - strand at 551.882 kb on - strand at 551.889 kb on + strand at 551.890 kb on - strand at 551.890 kb on - strand at 551.912 kb on - strand at 551.912 kb on - strand at 551.917 kb on - strand at 551.917 kb on - strand at 551.917 kb on - strand at 551.917 kb on - strand at 551.945 kb on + strand at 551.946 kb on - strand at 551.946 kb on - strand at 551.946 kb on - strand at 551.946 kb on - strand at 551.946 kb on - strand at 551.946 kb on - strand at 551.946 kb on - strand at 551.958 kb on + strand at 551.958 kb on + strand at 551.959 kb on - strand at 551.959 kb on - strand at 551.962 kb on + strand at 551.962 kb on + strand at 551.962 kb on + strand at 551.962 kb on + strand at 551.962 kb on + strand at 551.962 kb on + strand at 551.962 kb on + strand at 551.962 kb on + strand at 551.962 kb on + strand at 551.962 kb on + strand at 551.963 kb on - strand at 551.963 kb on - strand at 551.963 kb on - strand at 551.963 kb on - strand at 551.963 kb on - strand at 551.963 kb on - strand at 551.963 kb on - strand at 551.963 kb on - strand at 552.084 kb on + strand, within Sama_0446 at 552.090 kb on + strand, within Sama_0446 at 552.090 kb on + strand, within Sama_0446 at 552.091 kb on - strand, within Sama_0446 at 552.091 kb on - strand, within Sama_0446 at 552.091 kb on - strand, within Sama_0446 at 552.115 kb on + strand, within Sama_0446 at 552.135 kb on + strand, within Sama_0446 at 552.135 kb on + strand, within Sama_0446 at 552.135 kb on + strand, within Sama_0446 at 552.135 kb on + strand, within Sama_0446 at 552.135 kb on + strand, within Sama_0446 at 552.136 kb on - strand, within Sama_0446 at 552.136 kb on - strand, within Sama_0446 at 552.136 kb on - strand, within Sama_0446 at 552.136 kb on - strand, within Sama_0446 at 552.231 kb on + strand, within Sama_0446 at 552.231 kb on + strand, within Sama_0446 at 552.231 kb on + strand, within Sama_0446 at 552.231 kb on + strand, within Sama_0446 at 552.231 kb on + strand, within Sama_0446 at 552.231 kb on + strand, within Sama_0446 at 552.232 kb on - strand, within Sama_0446 at 552.232 kb on - strand, within Sama_0446 at 552.232 kb on - strand, within Sama_0446 at 552.232 kb on - strand, within Sama_0446 at 552.232 kb on - strand, within Sama_0446 at 552.295 kb on + strand, within Sama_0446 at 552.295 kb on + strand, within Sama_0446 at 552.295 kb on + strand, within Sama_0446 at 552.296 kb on - strand, within Sama_0446 at 552.296 kb on - strand, within Sama_0446 at 552.296 kb on - strand, within Sama_0446 at 552.296 kb on - strand, within Sama_0446 at 552.319 kb on + strand, within Sama_0446 at 552.319 kb on + strand, within Sama_0446 at 552.319 kb on + strand, within Sama_0446 at 552.319 kb on + strand, within Sama_0446 at 552.319 kb on + strand, within Sama_0446 at 552.319 kb on + strand, within Sama_0446 at 552.319 kb on + strand, within Sama_0446 at 552.320 kb on - strand, within Sama_0446 at 552.320 kb on - strand, within Sama_0446 at 552.320 kb on - strand, within Sama_0446 at 552.320 kb on - strand, within Sama_0446 at 552.320 kb on - strand, within Sama_0446 at 552.321 kb on + strand, within Sama_0446 at 552.321 kb on + strand, within Sama_0446 at 552.321 kb on + strand, within Sama_0446 at 552.321 kb on + strand, within Sama_0446 at 552.321 kb on + strand, within Sama_0446 at 552.321 kb on + strand, within Sama_0446 at 552.321 kb on + strand, within Sama_0446 at 552.321 kb on + strand, within Sama_0446 at 552.322 kb on - strand, within Sama_0446 at 552.322 kb on - strand, within Sama_0446 at 552.322 kb on - strand, within Sama_0446 at 552.322 kb on - strand, within Sama_0446 at 552.322 kb on - strand, within Sama_0446 at 552.322 kb on - strand, within Sama_0446 at 552.327 kb on + strand, within Sama_0446 at 552.328 kb on - strand, within Sama_0446 at 552.493 kb on + strand, within Sama_0446 at 552.549 kb on + strand, within Sama_0446 at 552.557 kb on + strand, within Sama_0446 at 552.557 kb on + strand, within Sama_0446 at 552.557 kb on + strand, within Sama_0446 at 552.557 kb on + strand, within Sama_0446 at 552.557 kb on + strand, within Sama_0446 at 552.557 kb on + strand, within Sama_0446 at 552.557 kb on + strand, within Sama_0446 at 552.557 kb on + strand, within Sama_0446 at 552.557 kb on + strand, within Sama_0446 at 552.557 kb on + strand, within Sama_0446 at 552.557 kb on + strand, within Sama_0446 at 552.557 kb on + strand, within Sama_0446 at 552.557 kb on + strand, within Sama_0446 at 552.557 kb on + strand, within Sama_0446 at 552.557 kb on + strand, within Sama_0446 at 552.557 kb on + strand, within Sama_0446 at 552.557 kb on + strand, within Sama_0446 at 552.558 kb on - strand, within Sama_0446 at 552.558 kb on - strand, within Sama_0446 at 552.558 kb on - strand, within Sama_0446 at 552.558 kb on - strand, within Sama_0446 at 552.558 kb on - strand, within Sama_0446 at 552.558 kb on - strand, within Sama_0446 at 552.558 kb on - strand, within Sama_0446 at 552.558 kb on - strand, within Sama_0446 at 552.558 kb on - strand, within Sama_0446 at 552.558 kb on - strand, within Sama_0446 at 552.558 kb on - strand, within Sama_0446 at 552.559 kb on + strand, within Sama_0446 at 552.560 kb on - strand, within Sama_0446 at 552.560 kb on - strand, within Sama_0446 at 552.560 kb on - strand, within Sama_0446 at 552.560 kb on - strand, within Sama_0446 at 552.560 kb on - strand, within Sama_0446 at 552.560 kb on - strand, within Sama_0446 at 552.560 kb on - strand, within Sama_0446 at 552.560 kb on - strand, within Sama_0446 at 552.603 kb on + strand, within Sama_0446 at 552.603 kb on + strand, within Sama_0446 at 552.603 kb on + strand, within Sama_0446 at 552.603 kb on + strand, within Sama_0446 at 552.639 kb on + strand, within Sama_0446 at 552.639 kb on + strand, within Sama_0446 at 552.639 kb on + strand, within Sama_0446 at 552.639 kb on + strand, within Sama_0446 at 552.639 kb on + strand, within Sama_0446 at 552.640 kb on - strand, within Sama_0446 at 552.640 kb on - strand, within Sama_0446 at 552.640 kb on - strand, within Sama_0446 at 552.801 kb on + strand at 553.197 kb on + strand at 553.197 kb on + strand at 553.197 kb on + strand at 553.197 kb on + strand at 553.198 kb on - strand at 553.198 kb on - strand at 553.198 kb on - strand at 553.198 kb on - strand at 553.303 kb on + strand at 553.307 kb on + strand at 553.307 kb on + strand at 553.307 kb on + strand at 553.307 kb on + strand at 553.308 kb on - strand at 553.308 kb on - strand at 553.308 kb on - strand at 553.330 kb on + strand at 553.353 kb on + strand at 553.354 kb on - strand at 553.354 kb on - strand at 553.354 kb on - strand at 553.406 kb on + strand at 553.407 kb on - strand at 553.488 kb on - strand at 553.511 kb on + strand at 553.511 kb on + strand at 553.515 kb on - strand at 553.515 kb on - strand at 553.515 kb on - strand at 553.568 kb on - strand at 553.623 kb on - strand at 553.623 kb on - strand at 553.703 kb on + strand at 553.744 kb on + strand, within Sama_0448 at 553.745 kb on - strand, within Sama_0448 at 553.766 kb on + strand, within Sama_0448 at 553.767 kb on - strand, within Sama_0448 at 553.857 kb on + strand, within Sama_0448 at 553.946 kb on - strand, within Sama_0448
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 551,882 - +2.3 551,882 - -1.0 551,889 + -1.3 551,890 - -2.4 551,890 - -1.3 551,912 - +0.3 551,912 - +1.4 551,917 - -0.3 551,917 - +0.7 551,917 - -0.1 551,917 - +0.1 551,945 + -1.4 551,946 - -3.2 551,946 - -1.9 551,946 - -0.4 551,946 - +0.9 551,946 - -0.1 551,946 - -1.3 551,946 - +0.5 551,958 + -2.4 551,958 + -0.7 551,959 - -2.0 551,959 - -0.3 551,962 + +1.6 551,962 + -1.7 551,962 + +0.7 551,962 + +0.8 551,962 + -1.2 551,962 + -1.2 551,962 + -1.1 551,962 + +0.5 551,962 + -1.7 551,962 + +1.5 551,963 - -1.7 551,963 - +0.8 551,963 - +0.0 551,963 - +2.1 551,963 - +0.9 551,963 - +2.6 551,963 - -2.8 551,963 - -1.0 552,084 + Sama_0446 0.11 +2.5 552,090 + Sama_0446 0.12 -1.2 552,090 + Sama_0446 0.12 -0.8 552,091 - Sama_0446 0.12 +3.4 552,091 - Sama_0446 0.12 +0.8 552,091 - Sama_0446 0.12 -2.4 552,115 + Sama_0446 0.15 -0.5 552,135 + Sama_0446 0.18 +0.8 552,135 + Sama_0446 0.18 +0.1 552,135 + Sama_0446 0.18 +1.5 552,135 + Sama_0446 0.18 +0.9 552,135 + Sama_0446 0.18 -0.7 552,136 - Sama_0446 0.18 +0.7 552,136 - Sama_0446 0.18 +2.9 552,136 - Sama_0446 0.18 -1.4 552,136 - Sama_0446 0.18 +1.4 552,231 + Sama_0446 0.31 +2.2 552,231 + Sama_0446 0.31 +1.4 552,231 + Sama_0446 0.31 +1.2 552,231 + Sama_0446 0.31 +2.5 552,231 + Sama_0446 0.31 -1.3 552,231 + Sama_0446 0.31 -1.5 552,232 - Sama_0446 0.31 +0.8 552,232 - Sama_0446 0.31 +1.9 552,232 - Sama_0446 0.31 -2.0 552,232 - Sama_0446 0.31 -2.1 552,232 - Sama_0446 0.31 -0.8 552,295 + Sama_0446 0.40 +0.1 552,295 + Sama_0446 0.40 +1.1 552,295 + Sama_0446 0.40 -1.7 552,296 - Sama_0446 0.40 -0.6 552,296 - Sama_0446 0.40 +1.9 552,296 - Sama_0446 0.40 +1.2 552,296 - Sama_0446 0.40 -1.0 552,319 + Sama_0446 0.43 +0.2 552,319 + Sama_0446 0.43 +1.1 552,319 + Sama_0446 0.43 -2.8 552,319 + Sama_0446 0.43 -1.2 552,319 + Sama_0446 0.43 +2.2 552,319 + Sama_0446 0.43 +0.5 552,319 + Sama_0446 0.43 -0.7 552,320 - Sama_0446 0.44 -2.5 552,320 - Sama_0446 0.44 -1.3 552,320 - Sama_0446 0.44 -0.8 552,320 - Sama_0446 0.44 +0.3 552,320 - Sama_0446 0.44 +1.7 552,321 + Sama_0446 0.44 +0.5 552,321 + Sama_0446 0.44 -2.6 552,321 + Sama_0446 0.44 +1.7 552,321 + Sama_0446 0.44 -2.4 552,321 + Sama_0446 0.44 +0.7 552,321 + Sama_0446 0.44 -1.3 552,321 + Sama_0446 0.44 -1.5 552,321 + Sama_0446 0.44 +0.0 552,322 - Sama_0446 0.44 +4.8 552,322 - Sama_0446 0.44 -2.9 552,322 - Sama_0446 0.44 +1.3 552,322 - Sama_0446 0.44 +0.9 552,322 - Sama_0446 0.44 +0.5 552,322 - Sama_0446 0.44 -2.9 552,327 + Sama_0446 0.44 +0.8 552,328 - Sama_0446 0.45 +0.2 552,493 + Sama_0446 0.67 +1.6 552,549 + Sama_0446 0.75 -0.1 552,557 + Sama_0446 0.76 -0.8 552,557 + Sama_0446 0.76 -0.1 552,557 + Sama_0446 0.76 +0.7 552,557 + Sama_0446 0.76 +0.5 552,557 + Sama_0446 0.76 +1.7 552,557 + Sama_0446 0.76 -0.4 552,557 + Sama_0446 0.76 -0.5 552,557 + Sama_0446 0.76 -0.4 552,557 + Sama_0446 0.76 +1.2 552,557 + Sama_0446 0.76 -1.3 552,557 + Sama_0446 0.76 +0.1 552,557 + Sama_0446 0.76 +0.2 552,557 + Sama_0446 0.76 -0.1 552,557 + Sama_0446 0.76 -0.3 552,557 + Sama_0446 0.76 -3.2 552,557 + Sama_0446 0.76 -3.2 552,557 + Sama_0446 0.76 +0.8 552,558 - Sama_0446 0.76 -0.8 552,558 - Sama_0446 0.76 -1.0 552,558 - Sama_0446 0.76 -1.5 552,558 - Sama_0446 0.76 -0.5 552,558 - Sama_0446 0.76 -0.1 552,558 - Sama_0446 0.76 +0.5 552,558 - Sama_0446 0.76 -0.5 552,558 - Sama_0446 0.76 +0.2 552,558 - Sama_0446 0.76 +1.5 552,558 - Sama_0446 0.76 -0.5 552,558 - Sama_0446 0.76 +1.2 552,559 + Sama_0446 0.76 -1.3 552,560 - Sama_0446 0.77 +0.5 552,560 - Sama_0446 0.77 -0.7 552,560 - Sama_0446 0.77 -0.9 552,560 - Sama_0446 0.77 -1.5 552,560 - Sama_0446 0.77 +1.8 552,560 - Sama_0446 0.77 +2.1 552,560 - Sama_0446 0.77 +0.6 552,560 - Sama_0446 0.77 +0.8 552,603 + Sama_0446 0.83 -1.3 552,603 + Sama_0446 0.83 -0.3 552,603 + Sama_0446 0.83 +0.5 552,603 + Sama_0446 0.83 +0.1 552,639 + Sama_0446 0.87 -0.8 552,639 + Sama_0446 0.87 -2.4 552,639 + Sama_0446 0.87 +2.1 552,639 + Sama_0446 0.87 -1.8 552,639 + Sama_0446 0.87 +1.7 552,640 - Sama_0446 0.88 -0.5 552,640 - Sama_0446 0.88 -0.1 552,640 - Sama_0446 0.88 +0.3 552,801 + -0.5 553,197 + -0.1 553,197 + +0.7 553,197 + +2.2 553,197 + +0.1 553,198 - +1.1 553,198 - +0.1 553,198 - +1.2 553,198 - -2.3 553,303 + -1.1 553,307 + +0.0 553,307 + +2.1 553,307 + +0.7 553,307 + +0.9 553,308 - -2.8 553,308 - +1.2 553,308 - +2.3 553,330 + +0.0 553,353 + -0.6 553,354 - -2.2 553,354 - +1.3 553,354 - +0.8 553,406 + -2.6 553,407 - +0.3 553,488 - -2.8 553,511 + -3.3 553,511 + -2.3 553,515 - +0.2 553,515 - -1.7 553,515 - -0.1 553,568 - +0.1 553,623 - -0.8 553,623 - +0.1 553,703 + -0.5 553,744 + Sama_0448 0.12 -0.8 553,745 - Sama_0448 0.12 +0.1 553,766 + Sama_0448 0.14 -0.8 553,767 - Sama_0448 0.14 -0.1 553,857 + Sama_0448 0.21 -1.5 553,946 - Sama_0448 0.28 -2.8
Or see this region's nucleotide sequence