Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0417 and Sama_0418 are separated by 345 nucleotides Sama_0418 and uvrD are separated by 149 nucleotides
Sama_0417: Sama_0417 - homocysteine S-methyltransferase (RefSeq), at 513,399 to 514,343
_0417
Sama_0418: Sama_0418 - putative transcriptional regulator, CadC (RefSeq), at 514,689 to 515,582
_0418
Sama_0419: uvrD - DNA-dependent helicase II (RefSeq), at 515,732 to 517,897
uvrD
Position (kb) 514
515
516 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 513.721 kb on + strand, within Sama_0417 at 513.721 kb on + strand, within Sama_0417 at 513.721 kb on + strand, within Sama_0417 at 513.721 kb on + strand, within Sama_0417 at 513.722 kb on - strand, within Sama_0417 at 513.722 kb on - strand, within Sama_0417 at 513.767 kb on + strand, within Sama_0417 at 513.768 kb on - strand, within Sama_0417 at 513.790 kb on - strand, within Sama_0417 at 513.922 kb on + strand, within Sama_0417 at 513.923 kb on - strand, within Sama_0417 at 513.923 kb on - strand, within Sama_0417 at 513.923 kb on - strand, within Sama_0417 at 514.050 kb on + strand, within Sama_0417 at 514.050 kb on + strand, within Sama_0417 at 514.050 kb on + strand, within Sama_0417 at 514.051 kb on - strand, within Sama_0417 at 514.051 kb on - strand, within Sama_0417 at 514.051 kb on - strand, within Sama_0417 at 514.059 kb on + strand, within Sama_0417 at 514.059 kb on + strand, within Sama_0417 at 514.064 kb on + strand, within Sama_0417 at 514.065 kb on - strand, within Sama_0417 at 514.065 kb on - strand, within Sama_0417 at 514.070 kb on + strand, within Sama_0417 at 514.070 kb on + strand, within Sama_0417 at 514.070 kb on + strand, within Sama_0417 at 514.071 kb on - strand, within Sama_0417 at 514.071 kb on - strand, within Sama_0417 at 514.071 kb on - strand, within Sama_0417 at 514.071 kb on - strand, within Sama_0417 at 514.178 kb on - strand, within Sama_0417 at 514.230 kb on + strand, within Sama_0417 at 514.230 kb on + strand, within Sama_0417 at 514.230 kb on + strand, within Sama_0417 at 514.230 kb on + strand, within Sama_0417 at 514.256 kb on + strand at 514.256 kb on + strand at 514.256 kb on + strand at 514.290 kb on - strand at 514.290 kb on - strand at 514.315 kb on + strand at 514.315 kb on + strand at 514.316 kb on - strand at 514.316 kb on - strand at 514.316 kb on - strand at 514.331 kb on + strand at 514.332 kb on - strand at 514.332 kb on - strand at 514.355 kb on + strand at 514.355 kb on + strand at 514.356 kb on - strand at 514.357 kb on + strand at 514.357 kb on + strand at 514.357 kb on + strand at 514.357 kb on + strand at 514.357 kb on + strand at 514.358 kb on - strand at 514.358 kb on - strand at 514.369 kb on + strand at 514.369 kb on + strand at 514.369 kb on + strand at 514.370 kb on - strand at 514.382 kb on + strand at 514.383 kb on - strand at 514.393 kb on + strand at 514.393 kb on + strand at 514.394 kb on - strand at 514.419 kb on + strand at 514.420 kb on - strand at 514.420 kb on - strand at 514.422 kb on + strand at 514.423 kb on - strand at 514.423 kb on - strand at 514.439 kb on + strand at 514.439 kb on + strand at 514.439 kb on + strand at 514.439 kb on + strand at 514.439 kb on + strand at 514.439 kb on + strand at 514.439 kb on + strand at 514.440 kb on - strand at 514.440 kb on - strand at 514.440 kb on - strand at 514.456 kb on + strand at 514.599 kb on + strand at 514.599 kb on + strand at 514.600 kb on - strand at 514.627 kb on + strand at 514.627 kb on + strand at 514.628 kb on - strand at 514.628 kb on - strand at 514.628 kb on - strand at 514.628 kb on - strand at 514.680 kb on + strand at 514.722 kb on - strand at 514.756 kb on - strand at 514.756 kb on - strand at 514.860 kb on + strand, within Sama_0418 at 514.860 kb on + strand, within Sama_0418 at 514.863 kb on + strand, within Sama_0418 at 514.863 kb on + strand, within Sama_0418 at 514.864 kb on - strand, within Sama_0418 at 514.864 kb on - strand, within Sama_0418 at 514.864 kb on - strand, within Sama_0418 at 514.864 kb on - strand, within Sama_0418 at 514.871 kb on - strand, within Sama_0418 at 514.871 kb on - strand, within Sama_0418 at 514.871 kb on - strand, within Sama_0418 at 514.955 kb on + strand, within Sama_0418 at 514.975 kb on + strand, within Sama_0418 at 514.975 kb on + strand, within Sama_0418 at 514.975 kb on + strand, within Sama_0418 at 514.976 kb on - strand, within Sama_0418 at 514.981 kb on + strand, within Sama_0418 at 514.981 kb on + strand, within Sama_0418 at 514.981 kb on + strand, within Sama_0418 at 514.981 kb on + strand, within Sama_0418 at 514.982 kb on - strand, within Sama_0418 at 514.982 kb on - strand, within Sama_0418 at 514.982 kb on - strand, within Sama_0418 at 514.982 kb on - strand, within Sama_0418 at 514.982 kb on - strand, within Sama_0418 at 514.982 kb on - strand, within Sama_0418 at 514.993 kb on - strand, within Sama_0418 at 515.013 kb on - strand, within Sama_0418 at 515.013 kb on - strand, within Sama_0418 at 515.013 kb on - strand, within Sama_0418 at 515.024 kb on + strand, within Sama_0418 at 515.025 kb on - strand, within Sama_0418 at 515.026 kb on + strand, within Sama_0418 at 515.026 kb on + strand, within Sama_0418 at 515.026 kb on + strand, within Sama_0418 at 515.027 kb on - strand, within Sama_0418 at 515.027 kb on - strand, within Sama_0418 at 515.036 kb on + strand, within Sama_0418 at 515.059 kb on - strand, within Sama_0418 at 515.130 kb on + strand, within Sama_0418 at 515.130 kb on + strand, within Sama_0418 at 515.130 kb on + strand, within Sama_0418 at 515.130 kb on + strand, within Sama_0418 at 515.130 kb on + strand, within Sama_0418 at 515.130 kb on + strand, within Sama_0418 at 515.131 kb on - strand, within Sama_0418 at 515.131 kb on - strand, within Sama_0418 at 515.131 kb on - strand, within Sama_0418 at 515.131 kb on - strand, within Sama_0418 at 515.161 kb on + strand, within Sama_0418 at 515.161 kb on + strand, within Sama_0418 at 515.161 kb on + strand, within Sama_0418 at 515.161 kb on + strand, within Sama_0418 at 515.161 kb on + strand, within Sama_0418 at 515.161 kb on + strand, within Sama_0418 at 515.161 kb on + strand, within Sama_0418 at 515.161 kb on + strand, within Sama_0418 at 515.162 kb on - strand, within Sama_0418 at 515.162 kb on - strand, within Sama_0418 at 515.162 kb on - strand, within Sama_0418 at 515.162 kb on - strand, within Sama_0418 at 515.363 kb on + strand, within Sama_0418 at 515.378 kb on + strand, within Sama_0418 at 515.379 kb on - strand, within Sama_0418 at 515.379 kb on - strand, within Sama_0418 at 515.379 kb on - strand, within Sama_0418 at 515.412 kb on - strand, within Sama_0418 at 515.461 kb on + strand, within Sama_0418 at 515.527 kb on + strand at 515.527 kb on + strand at 515.528 kb on - strand at 515.528 kb on - strand at 515.528 kb on - strand at 515.528 kb on - strand at 515.528 kb on - strand at 515.567 kb on - strand at 515.575 kb on + strand at 515.575 kb on + strand at 515.575 kb on + strand at 515.575 kb on + strand at 515.575 kb on + strand at 515.575 kb on + strand at 515.575 kb on + strand at 515.576 kb on - strand at 515.576 kb on - strand at 515.576 kb on - strand at 515.576 kb on - strand at 515.576 kb on - strand at 515.624 kb on + strand at 515.624 kb on + strand at 515.625 kb on - strand at 515.625 kb on - strand at 515.625 kb on - strand at 515.629 kb on + strand at 515.700 kb on + strand at 515.700 kb on + strand at 515.701 kb on - strand at 515.701 kb on - strand at 515.701 kb on - strand at 515.701 kb on - strand at 515.702 kb on + strand at 515.702 kb on + strand at 515.702 kb on + strand at 515.702 kb on + strand at 515.703 kb on - strand at 515.703 kb on - strand at 515.703 kb on - strand at 515.703 kb on - strand at 515.767 kb on + strand at 515.768 kb on - strand at 515.768 kb on - strand at 515.991 kb on + strand, within uvrD at 515.991 kb on + strand, within uvrD at 515.991 kb on + strand, within uvrD at 515.991 kb on + strand, within uvrD at 515.991 kb on + strand, within uvrD at 515.992 kb on - strand, within uvrD at 515.992 kb on - strand, within uvrD at 515.995 kb on + strand, within uvrD at 515.995 kb on + strand, within uvrD at 515.995 kb on + strand, within uvrD at 515.995 kb on + strand, within uvrD at 516.164 kb on + strand, within uvrD at 516.164 kb on + strand, within uvrD at 516.164 kb on + strand, within uvrD at 516.166 kb on + strand, within uvrD at 516.166 kb on + strand, within uvrD at 516.166 kb on + strand, within uvrD at 516.167 kb on - strand, within uvrD at 516.167 kb on - strand, within uvrD at 516.205 kb on + strand, within uvrD at 516.207 kb on + strand, within uvrD at 516.207 kb on + strand, within uvrD at 516.207 kb on + strand, within uvrD at 516.208 kb on - strand, within uvrD at 516.208 kb on - strand, within uvrD at 516.208 kb on - strand, within uvrD at 516.208 kb on - strand, within uvrD at 516.208 kb on - strand, within uvrD at 516.226 kb on + strand, within uvrD at 516.251 kb on + strand, within uvrD at 516.256 kb on + strand, within uvrD at 516.256 kb on + strand, within uvrD at 516.256 kb on + strand, within uvrD at 516.256 kb on + strand, within uvrD at 516.257 kb on - strand, within uvrD at 516.257 kb on - strand, within uvrD at 516.257 kb on - strand, within uvrD at 516.260 kb on + strand, within uvrD at 516.260 kb on + strand, within uvrD at 516.337 kb on + strand, within uvrD at 516.338 kb on - strand, within uvrD at 516.359 kb on + strand, within uvrD at 516.380 kb on - strand, within uvrD at 516.380 kb on - strand, within uvrD at 516.419 kb on + strand, within uvrD at 516.420 kb on - strand, within uvrD at 516.562 kb on - strand, within uvrD at 516.562 kb on - strand, within uvrD at 516.562 kb on - strand, within uvrD
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 513,721 + Sama_0417 0.34 +0.5 513,721 + Sama_0417 0.34 -2.1 513,721 + Sama_0417 0.34 -0.7 513,721 + Sama_0417 0.34 +0.1 513,722 - Sama_0417 0.34 -1.2 513,722 - Sama_0417 0.34 -1.8 513,767 + Sama_0417 0.39 +1.5 513,768 - Sama_0417 0.39 -2.2 513,790 - Sama_0417 0.41 +0.8 513,922 + Sama_0417 0.55 +1.2 513,923 - Sama_0417 0.55 +0.1 513,923 - Sama_0417 0.55 -0.5 513,923 - Sama_0417 0.55 +1.4 514,050 + Sama_0417 0.69 -1.3 514,050 + Sama_0417 0.69 +1.9 514,050 + Sama_0417 0.69 +0.0 514,051 - Sama_0417 0.69 -1.8 514,051 - Sama_0417 0.69 +2.0 514,051 - Sama_0417 0.69 -1.0 514,059 + Sama_0417 0.70 +0.4 514,059 + Sama_0417 0.70 -2.8 514,064 + Sama_0417 0.70 -1.3 514,065 - Sama_0417 0.70 -2.6 514,065 - Sama_0417 0.70 -2.0 514,070 + Sama_0417 0.71 -1.7 514,070 + Sama_0417 0.71 -0.1 514,070 + Sama_0417 0.71 -1.7 514,071 - Sama_0417 0.71 -1.4 514,071 - Sama_0417 0.71 -1.5 514,071 - Sama_0417 0.71 +3.0 514,071 - Sama_0417 0.71 -1.2 514,178 - Sama_0417 0.82 -1.1 514,230 + Sama_0417 0.88 +0.5 514,230 + Sama_0417 0.88 -3.2 514,230 + Sama_0417 0.88 -1.7 514,230 + Sama_0417 0.88 +2.4 514,256 + +0.3 514,256 + -0.5 514,256 + -0.5 514,290 - +0.1 514,290 - -2.8 514,315 + +0.5 514,315 + +1.6 514,316 - +0.5 514,316 - +1.1 514,316 - -0.5 514,331 + -1.5 514,332 - +1.3 514,332 - +0.3 514,355 + -3.4 514,355 + +1.8 514,356 - -1.3 514,357 + +0.0 514,357 + -1.2 514,357 + -3.3 514,357 + -1.1 514,357 + -2.4 514,358 - +1.1 514,358 - +1.7 514,369 + -0.1 514,369 + -0.5 514,369 + -0.5 514,370 - -1.0 514,382 + -0.8 514,383 - +1.5 514,393 + -1.3 514,393 + +0.1 514,394 - +1.5 514,419 + -1.1 514,420 - -0.8 514,420 - -1.8 514,422 + +1.3 514,423 - -1.1 514,423 - -1.3 514,439 + -1.6 514,439 + -2.0 514,439 + -0.8 514,439 + +0.9 514,439 + -0.5 514,439 + -1.6 514,439 + +1.5 514,440 - +1.9 514,440 - -1.1 514,440 - +2.4 514,456 + -1.1 514,599 + -1.5 514,599 + +0.6 514,600 - +0.1 514,627 + -0.3 514,627 + -2.1 514,628 - -1.0 514,628 - -1.7 514,628 - -1.0 514,628 - -2.8 514,680 + -1.5 514,722 - -1.3 514,756 - +1.5 514,756 - -0.3 514,860 + Sama_0418 0.19 -0.6 514,860 + Sama_0418 0.19 -0.6 514,863 + Sama_0418 0.19 +0.6 514,863 + Sama_0418 0.19 +0.7 514,864 - Sama_0418 0.20 -1.7 514,864 - Sama_0418 0.20 +1.5 514,864 - Sama_0418 0.20 -1.5 514,864 - Sama_0418 0.20 -0.6 514,871 - Sama_0418 0.20 +0.5 514,871 - Sama_0418 0.20 +2.8 514,871 - Sama_0418 0.20 -2.6 514,955 + Sama_0418 0.30 +0.5 514,975 + Sama_0418 0.32 +1.2 514,975 + Sama_0418 0.32 -1.3 514,975 + Sama_0418 0.32 +0.5 514,976 - Sama_0418 0.32 -1.5 514,981 + Sama_0418 0.33 -1.3 514,981 + Sama_0418 0.33 +2.1 514,981 + Sama_0418 0.33 +0.7 514,981 + Sama_0418 0.33 -0.5 514,982 - Sama_0418 0.33 -0.5 514,982 - Sama_0418 0.33 -1.7 514,982 - Sama_0418 0.33 +0.9 514,982 - Sama_0418 0.33 +0.3 514,982 - Sama_0418 0.33 -1.5 514,982 - Sama_0418 0.33 +0.5 514,993 - Sama_0418 0.34 -0.1 515,013 - Sama_0418 0.36 -2.6 515,013 - Sama_0418 0.36 +2.0 515,013 - Sama_0418 0.36 +2.0 515,024 + Sama_0418 0.37 +0.2 515,025 - Sama_0418 0.38 -2.0 515,026 + Sama_0418 0.38 +0.1 515,026 + Sama_0418 0.38 +0.2 515,026 + Sama_0418 0.38 +0.2 515,027 - Sama_0418 0.38 +2.0 515,027 - Sama_0418 0.38 +1.3 515,036 + Sama_0418 0.39 -0.7 515,059 - Sama_0418 0.41 -0.4 515,130 + Sama_0418 0.49 -0.3 515,130 + Sama_0418 0.49 +0.2 515,130 + Sama_0418 0.49 -0.9 515,130 + Sama_0418 0.49 +2.6 515,130 + Sama_0418 0.49 +1.5 515,130 + Sama_0418 0.49 -0.2 515,131 - Sama_0418 0.49 -2.3 515,131 - Sama_0418 0.49 +0.7 515,131 - Sama_0418 0.49 -1.5 515,131 - Sama_0418 0.49 +1.5 515,161 + Sama_0418 0.53 +1.8 515,161 + Sama_0418 0.53 +0.4 515,161 + Sama_0418 0.53 +0.4 515,161 + Sama_0418 0.53 +1.8 515,161 + Sama_0418 0.53 +0.9 515,161 + Sama_0418 0.53 -2.2 515,161 + Sama_0418 0.53 -0.1 515,161 + Sama_0418 0.53 -1.5 515,162 - Sama_0418 0.53 +0.7 515,162 - Sama_0418 0.53 -1.3 515,162 - Sama_0418 0.53 +0.4 515,162 - Sama_0418 0.53 -1.0 515,363 + Sama_0418 0.75 -1.0 515,378 + Sama_0418 0.77 +1.0 515,379 - Sama_0418 0.77 -2.2 515,379 - Sama_0418 0.77 -1.5 515,379 - Sama_0418 0.77 +0.5 515,412 - Sama_0418 0.81 +1.1 515,461 + Sama_0418 0.86 -3.0 515,527 + -0.8 515,527 + -1.3 515,528 - +0.9 515,528 - -0.6 515,528 - -1.6 515,528 - +1.3 515,528 - +0.2 515,567 - +1.1 515,575 + +0.2 515,575 + +1.5 515,575 + +0.5 515,575 + +3.4 515,575 + -2.6 515,575 + -0.4 515,575 + +1.1 515,576 - -0.8 515,576 - +2.4 515,576 - -0.5 515,576 - -0.9 515,576 - +1.5 515,624 + -1.7 515,624 + -1.5 515,625 - +0.3 515,625 - +0.6 515,625 - +0.4 515,629 + -0.5 515,700 + -0.5 515,700 + +2.3 515,701 - +3.2 515,701 - +2.4 515,701 - +1.9 515,701 - +0.2 515,702 + +3.0 515,702 + +2.4 515,702 + +2.3 515,702 + +1.7 515,703 - +0.9 515,703 - +2.1 515,703 - +0.2 515,703 - -0.8 515,767 + -2.5 515,768 - +0.5 515,768 - -0.8 515,991 + uvrD Sama_0419 0.12 -2.2 515,991 + uvrD Sama_0419 0.12 -0.8 515,991 + uvrD Sama_0419 0.12 -2.6 515,991 + uvrD Sama_0419 0.12 -0.5 515,991 + uvrD Sama_0419 0.12 -1.1 515,992 - uvrD Sama_0419 0.12 -1.1 515,992 - uvrD Sama_0419 0.12 +1.5 515,995 + uvrD Sama_0419 0.12 -1.1 515,995 + uvrD Sama_0419 0.12 -0.8 515,995 + uvrD Sama_0419 0.12 -3.1 515,995 + uvrD Sama_0419 0.12 +0.2 516,164 + uvrD Sama_0419 0.20 -2.3 516,164 + uvrD Sama_0419 0.20 -0.5 516,164 + uvrD Sama_0419 0.20 -0.5 516,166 + uvrD Sama_0419 0.20 -2.2 516,166 + uvrD Sama_0419 0.20 -1.8 516,166 + uvrD Sama_0419 0.20 -1.1 516,167 - uvrD Sama_0419 0.20 -0.8 516,167 - uvrD Sama_0419 0.20 -0.8 516,205 + uvrD Sama_0419 0.22 -2.9 516,207 + uvrD Sama_0419 0.22 -1.3 516,207 + uvrD Sama_0419 0.22 +1.5 516,207 + uvrD Sama_0419 0.22 -0.8 516,208 - uvrD Sama_0419 0.22 -0.5 516,208 - uvrD Sama_0419 0.22 -0.5 516,208 - uvrD Sama_0419 0.22 -1.8 516,208 - uvrD Sama_0419 0.22 -1.7 516,208 - uvrD Sama_0419 0.22 -1.3 516,226 + uvrD Sama_0419 0.23 -0.8 516,251 + uvrD Sama_0419 0.24 -0.8 516,256 + uvrD Sama_0419 0.24 -1.1 516,256 + uvrD Sama_0419 0.24 -0.8 516,256 + uvrD Sama_0419 0.24 -0.8 516,256 + uvrD Sama_0419 0.24 -2.1 516,257 - uvrD Sama_0419 0.24 -0.1 516,257 - uvrD Sama_0419 0.24 -0.8 516,257 - uvrD Sama_0419 0.24 -1.3 516,260 + uvrD Sama_0419 0.24 -1.5 516,260 + uvrD Sama_0419 0.24 -1.5 516,337 + uvrD Sama_0419 0.28 -1.5 516,338 - uvrD Sama_0419 0.28 -0.5 516,359 + uvrD Sama_0419 0.29 -1.3 516,380 - uvrD Sama_0419 0.30 -0.5 516,380 - uvrD Sama_0419 0.30 +1.5 516,419 + uvrD Sama_0419 0.32 -0.7 516,420 - uvrD Sama_0419 0.32 +0.9 516,562 - uvrD Sama_0419 0.38 -0.1 516,562 - uvrD Sama_0419 0.38 -0.8 516,562 - uvrD Sama_0419 0.38 -2.3
Or see this region's nucleotide sequence