Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0142 and Sama_0143 are separated by 326 nucleotides Sama_0143 and Sama_0144 are separated by 564 nucleotides
Sama_0142: Sama_0142 - sensory box protein (RefSeq), at 161,067 to 164,276
_0142
Sama_0143: Sama_0143 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq), at 164,603 to 165,271
_0143
Sama_0144: Sama_0144 - oligopeptidase B (RefSeq), at 165,836 to 167,947
_0144
Position (kb) 164
165
166 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 163.621 kb on - strand, within Sama_0142 at 163.640 kb on + strand, within Sama_0142 at 163.640 kb on + strand, within Sama_0142 at 163.744 kb on + strand, within Sama_0142 at 163.745 kb on - strand, within Sama_0142 at 163.745 kb on - strand, within Sama_0142 at 163.793 kb on + strand, within Sama_0142 at 163.793 kb on + strand, within Sama_0142 at 163.794 kb on - strand, within Sama_0142 at 163.794 kb on - strand, within Sama_0142 at 163.993 kb on + strand at 163.994 kb on - strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.998 kb on + strand at 163.999 kb on - strand at 163.999 kb on - strand at 163.999 kb on - strand at 163.999 kb on - strand at 163.999 kb on - strand at 163.999 kb on - strand at 163.999 kb on - strand at 163.999 kb on - strand at 163.999 kb on - strand at 163.999 kb on - strand at 163.999 kb on - strand at 163.999 kb on - strand at 163.999 kb on - strand at 163.999 kb on - strand at 163.999 kb on - strand at 164.031 kb on + strand at 164.032 kb on - strand at 164.032 kb on - strand at 164.032 kb on - strand at 164.032 kb on - strand at 164.032 kb on - strand at 164.051 kb on + strand at 164.051 kb on + strand at 164.052 kb on - strand at 164.052 kb on - strand at 164.052 kb on - strand at 164.052 kb on - strand at 164.062 kb on + strand at 164.062 kb on + strand at 164.062 kb on + strand at 164.062 kb on + strand at 164.062 kb on + strand at 164.063 kb on - strand at 164.063 kb on - strand at 164.063 kb on - strand at 164.063 kb on - strand at 164.063 kb on - strand at 164.098 kb on + strand at 164.141 kb on + strand at 164.201 kb on + strand at 164.202 kb on - strand at 164.217 kb on - strand at 164.217 kb on - strand at 164.238 kb on - strand at 164.238 kb on - strand at 164.238 kb on - strand at 164.257 kb on + strand at 164.258 kb on - strand at 164.258 kb on - strand at 164.306 kb on + strand at 164.306 kb on + strand at 164.306 kb on + strand at 164.307 kb on - strand at 164.315 kb on - strand at 164.315 kb on - strand at 164.315 kb on - strand at 164.315 kb on - strand at 164.334 kb on + strand at 164.336 kb on + strand at 164.336 kb on + strand at 164.336 kb on + strand at 164.336 kb on + strand at 164.336 kb on + strand at 164.336 kb on + strand at 164.337 kb on - strand at 164.337 kb on - strand at 164.337 kb on - strand at 164.352 kb on + strand at 164.353 kb on - strand at 164.353 kb on - strand at 164.382 kb on + strand at 164.382 kb on + strand at 164.382 kb on + strand at 164.382 kb on + strand at 164.382 kb on + strand at 164.382 kb on + strand at 164.382 kb on + strand at 164.383 kb on - strand at 164.383 kb on - strand at 164.383 kb on - strand at 164.444 kb on + strand at 164.444 kb on + strand at 164.444 kb on + strand at 164.444 kb on + strand at 164.444 kb on + strand at 164.445 kb on - strand at 164.445 kb on - strand at 164.453 kb on + strand at 164.453 kb on + strand at 164.453 kb on + strand at 164.454 kb on - strand at 164.454 kb on - strand at 164.486 kb on - strand at 164.486 kb on - strand at 164.486 kb on - strand at 164.486 kb on - strand at 164.486 kb on - strand at 164.486 kb on - strand at 164.486 kb on - strand at 164.505 kb on + strand at 164.505 kb on + strand at 164.505 kb on + strand at 164.505 kb on + strand at 164.505 kb on + strand at 164.505 kb on + strand at 164.505 kb on + strand at 164.505 kb on + strand at 164.506 kb on - strand at 164.506 kb on - strand at 164.506 kb on - strand at 164.506 kb on - strand at 164.506 kb on - strand at 164.506 kb on - strand at 164.506 kb on - strand at 164.506 kb on - strand at 164.509 kb on + strand at 164.509 kb on + strand at 164.509 kb on + strand at 164.509 kb on + strand at 164.509 kb on + strand at 164.509 kb on + strand at 164.509 kb on + strand at 164.510 kb on - strand at 164.510 kb on - strand at 164.510 kb on - strand at 164.510 kb on - strand at 164.510 kb on - strand at 164.510 kb on - strand at 164.510 kb on - strand at 164.510 kb on - strand at 164.510 kb on - strand at 164.519 kb on + strand at 164.519 kb on + strand at 164.520 kb on - strand at 164.520 kb on - strand at 164.520 kb on - strand at 164.562 kb on + strand at 164.562 kb on + strand at 164.562 kb on + strand at 164.562 kb on + strand at 164.562 kb on + strand at 164.562 kb on + strand at 164.562 kb on + strand at 164.563 kb on - strand at 164.563 kb on - strand at 164.563 kb on - strand at 164.783 kb on + strand, within Sama_0143 at 164.783 kb on + strand, within Sama_0143 at 164.783 kb on + strand, within Sama_0143 at 164.783 kb on + strand, within Sama_0143 at 164.783 kb on + strand, within Sama_0143 at 164.784 kb on - strand, within Sama_0143 at 164.784 kb on - strand, within Sama_0143 at 164.784 kb on - strand, within Sama_0143 at 164.798 kb on - strand, within Sama_0143 at 164.798 kb on - strand, within Sama_0143 at 164.816 kb on + strand, within Sama_0143 at 164.816 kb on + strand, within Sama_0143 at 164.817 kb on - strand, within Sama_0143 at 164.845 kb on - strand, within Sama_0143 at 164.971 kb on + strand, within Sama_0143 at 164.972 kb on - strand, within Sama_0143 at 164.980 kb on + strand, within Sama_0143 at 164.981 kb on - strand, within Sama_0143 at 164.981 kb on - strand, within Sama_0143 at 164.985 kb on + strand, within Sama_0143 at 164.985 kb on + strand, within Sama_0143 at 164.985 kb on + strand, within Sama_0143 at 164.986 kb on - strand, within Sama_0143 at 165.082 kb on + strand, within Sama_0143 at 165.170 kb on + strand, within Sama_0143 at 165.170 kb on + strand, within Sama_0143 at 165.170 kb on + strand, within Sama_0143 at 165.171 kb on - strand, within Sama_0143 at 165.271 kb on + strand at 165.274 kb on + strand at 165.274 kb on + strand at 165.274 kb on + strand at 165.274 kb on + strand at 165.274 kb on + strand at 165.275 kb on - strand at 165.275 kb on - strand at 165.275 kb on - strand at 165.275 kb on - strand at 165.275 kb on - strand at 165.275 kb on - strand at 165.275 kb on - strand at 165.275 kb on - strand at 165.291 kb on + strand at 165.297 kb on + strand at 165.312 kb on + strand at 165.312 kb on + strand at 165.313 kb on - strand at 165.346 kb on + strand at 165.347 kb on - strand at 165.347 kb on - strand at 165.431 kb on + strand at 165.432 kb on - strand at 165.646 kb on + strand at 165.647 kb on - strand at 165.647 kb on - strand at 165.647 kb on - strand at 165.689 kb on - strand at 165.744 kb on + strand at 165.744 kb on + strand at 165.744 kb on + strand at 165.745 kb on - strand at 165.745 kb on - strand at 165.745 kb on - strand at 165.745 kb on - strand at 165.756 kb on - strand at 165.756 kb on - strand at 165.773 kb on + strand at 165.773 kb on + strand at 165.774 kb on - strand at 165.774 kb on - strand at 165.779 kb on + strand at 165.779 kb on + strand at 165.779 kb on + strand at 165.780 kb on - strand at 165.780 kb on - strand at 165.782 kb on + strand at 165.828 kb on + strand at 165.828 kb on + strand at 165.828 kb on + strand at 165.828 kb on + strand at 165.828 kb on + strand at 165.828 kb on + strand at 165.828 kb on + strand at 165.828 kb on + strand at 165.829 kb on - strand at 165.829 kb on - strand at 165.829 kb on - strand at 165.834 kb on + strand at 165.835 kb on - strand at 165.835 kb on - strand at 165.859 kb on + strand at 165.859 kb on + strand at 165.860 kb on - strand at 165.865 kb on + strand at 165.932 kb on + strand at 165.933 kb on - strand at 165.933 kb on - strand at 165.971 kb on + strand at 165.971 kb on + strand at 165.971 kb on + strand at 165.971 kb on + strand at 165.971 kb on + strand at 165.971 kb on + strand at 165.971 kb on + strand at 165.971 kb on + strand at 165.972 kb on - strand at 165.972 kb on - strand at 165.972 kb on - strand at 165.972 kb on - strand at 165.972 kb on - strand at 165.972 kb on - strand at 165.972 kb on - strand at 165.972 kb on - strand at 165.974 kb on + strand at 165.974 kb on + strand at 165.974 kb on + strand at 165.974 kb on + strand at 165.975 kb on - strand at 165.975 kb on - strand at 165.975 kb on - strand at 165.975 kb on - strand at 165.975 kb on - strand at 166.015 kb on - strand at 166.015 kb on - strand at 166.040 kb on + strand at 166.041 kb on - strand at 166.075 kb on - strand, within Sama_0144 at 166.075 kb on - strand, within Sama_0144 at 166.075 kb on - strand, within Sama_0144 at 166.075 kb on - strand, within Sama_0144 at 166.136 kb on + strand, within Sama_0144 at 166.136 kb on + strand, within Sama_0144 at 166.136 kb on + strand, within Sama_0144 at 166.136 kb on + strand, within Sama_0144 at 166.137 kb on - strand, within Sama_0144 at 166.137 kb on - strand, within Sama_0144 at 166.137 kb on - strand, within Sama_0144 at 166.154 kb on + strand, within Sama_0144 at 166.154 kb on + strand, within Sama_0144 at 166.154 kb on + strand, within Sama_0144 at 166.155 kb on - strand, within Sama_0144 at 166.155 kb on - strand, within Sama_0144 at 166.155 kb on - strand, within Sama_0144 at 166.155 kb on - strand, within Sama_0144 at 166.155 kb on - strand, within Sama_0144 at 166.157 kb on + strand, within Sama_0144 at 166.157 kb on + strand, within Sama_0144 at 166.157 kb on + strand, within Sama_0144 at 166.157 kb on + strand, within Sama_0144 at 166.157 kb on + strand, within Sama_0144 at 166.157 kb on + strand, within Sama_0144 at 166.157 kb on + strand, within Sama_0144 at 166.157 kb on + strand, within Sama_0144 at 166.157 kb on + strand, within Sama_0144 at 166.158 kb on - strand, within Sama_0144 at 166.158 kb on - strand, within Sama_0144 at 166.158 kb on - strand, within Sama_0144 at 166.158 kb on - strand, within Sama_0144 at 166.158 kb on - strand, within Sama_0144 at 166.158 kb on - strand, within Sama_0144 at 166.158 kb on - strand, within Sama_0144 at 166.158 kb on - strand, within Sama_0144 at 166.160 kb on + strand, within Sama_0144
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 163,621 - Sama_0142 0.80 +1.0 163,640 + Sama_0142 0.80 +0.4 163,640 + Sama_0142 0.80 -1.9 163,744 + Sama_0142 0.83 +0.9 163,745 - Sama_0142 0.83 +1.9 163,745 - Sama_0142 0.83 +1.0 163,793 + Sama_0142 0.85 -1.5 163,793 + Sama_0142 0.85 -2.1 163,794 - Sama_0142 0.85 -0.4 163,794 - Sama_0142 0.85 -1.5 163,993 + +0.9 163,994 - -2.3 163,998 + +1.4 163,998 + -0.5 163,998 + -0.4 163,998 + -1.2 163,998 + +3.5 163,998 + +0.5 163,998 + +0.6 163,998 + -0.2 163,998 + +1.6 163,998 + -1.4 163,998 + +1.6 163,998 + -1.0 163,998 + +2.4 163,998 + -2.7 163,998 + -1.6 163,998 + -1.6 163,998 + -1.5 163,998 + -1.4 163,998 + -0.8 163,998 + +0.1 163,998 + +0.1 163,998 + +0.3 163,998 + +0.7 163,999 - +0.6 163,999 - +2.2 163,999 - -0.1 163,999 - -2.1 163,999 - -2.5 163,999 - -2.4 163,999 - -0.2 163,999 - +0.0 163,999 - -2.9 163,999 - +2.0 163,999 - -0.4 163,999 - -0.1 163,999 - +0.9 163,999 - -1.6 163,999 - -2.5 164,031 + +2.8 164,032 - -2.7 164,032 - -2.5 164,032 - -0.5 164,032 - +0.6 164,032 - +0.0 164,051 + -0.4 164,051 + +2.4 164,052 - -0.4 164,052 - -2.0 164,052 - -1.6 164,052 - +0.4 164,062 + +1.5 164,062 + +1.0 164,062 + -1.5 164,062 + -1.2 164,062 + -1.0 164,063 - +0.5 164,063 - -0.3 164,063 - -1.5 164,063 - -1.5 164,063 - +0.6 164,098 + -1.4 164,141 + -0.4 164,201 + -1.7 164,202 - +0.3 164,217 - +1.9 164,217 - +0.2 164,238 - +0.2 164,238 - +1.2 164,238 - -1.7 164,257 + -2.0 164,258 - +2.2 164,258 - -0.5 164,306 + -2.1 164,306 + -1.8 164,306 + +0.9 164,307 - +2.4 164,315 - +0.4 164,315 - +1.1 164,315 - +1.0 164,315 - +0.7 164,334 + -0.3 164,336 + -0.2 164,336 + -1.4 164,336 + +0.0 164,336 + -0.6 164,336 + -1.4 164,336 + -0.1 164,337 - -0.7 164,337 - -1.0 164,337 - -1.5 164,352 + +1.5 164,353 - -1.2 164,353 - +2.6 164,382 + -1.4 164,382 + +0.4 164,382 + +0.6 164,382 + -2.8 164,382 + -2.8 164,382 + -0.6 164,382 + +0.6 164,383 - -1.8 164,383 - +1.2 164,383 - -0.1 164,444 + +1.8 164,444 + +0.9 164,444 + +0.9 164,444 + -2.6 164,444 + -0.8 164,445 - +2.1 164,445 - +1.2 164,453 + -1.8 164,453 + -1.8 164,453 + +0.2 164,454 - +1.6 164,454 - -2.1 164,486 - +1.1 164,486 - +1.4 164,486 - -1.3 164,486 - -0.2 164,486 - +0.4 164,486 - -1.2 164,486 - +0.9 164,505 + -1.0 164,505 + -0.1 164,505 + -1.0 164,505 + -2.6 164,505 + +0.3 164,505 + -1.8 164,505 + -0.3 164,505 + +0.0 164,506 - -3.5 164,506 - -0.7 164,506 - +1.1 164,506 - -2.0 164,506 - -2.5 164,506 - -0.7 164,506 - -2.1 164,506 - -0.4 164,509 + -1.4 164,509 + +2.1 164,509 + -2.2 164,509 + -1.7 164,509 + -0.7 164,509 + +1.8 164,509 + +0.2 164,510 - +2.6 164,510 - +1.4 164,510 - -1.6 164,510 - -0.4 164,510 - +0.1 164,510 - +0.8 164,510 - -1.0 164,510 - +0.4 164,510 - -0.2 164,519 + +1.0 164,519 + +1.4 164,520 - -0.2 164,520 - +1.9 164,520 - -1.5 164,562 + -3.8 164,562 + +1.2 164,562 + +0.5 164,562 + +0.5 164,562 + +0.1 164,562 + -0.4 164,562 + -2.2 164,563 - +2.6 164,563 - -0.3 164,563 - +2.5 164,783 + Sama_0143 0.27 +1.1 164,783 + Sama_0143 0.27 -2.4 164,783 + Sama_0143 0.27 +0.4 164,783 + Sama_0143 0.27 +1.9 164,783 + Sama_0143 0.27 -0.8 164,784 - Sama_0143 0.27 +0.5 164,784 - Sama_0143 0.27 +1.4 164,784 - Sama_0143 0.27 +2.6 164,798 - Sama_0143 0.29 +0.6 164,798 - Sama_0143 0.29 -0.7 164,816 + Sama_0143 0.32 +1.0 164,816 + Sama_0143 0.32 -1.0 164,817 - Sama_0143 0.32 -1.0 164,845 - Sama_0143 0.36 -1.0 164,971 + Sama_0143 0.55 +0.8 164,972 - Sama_0143 0.55 +0.6 164,980 + Sama_0143 0.56 +0.4 164,981 - Sama_0143 0.57 +0.2 164,981 - Sama_0143 0.57 -1.5 164,985 + Sama_0143 0.57 +0.6 164,985 + Sama_0143 0.57 -1.4 164,985 + Sama_0143 0.57 -0.9 164,986 - Sama_0143 0.57 +1.5 165,082 + Sama_0143 0.72 +1.2 165,170 + Sama_0143 0.85 -2.1 165,170 + Sama_0143 0.85 +1.3 165,170 + Sama_0143 0.85 -1.5 165,171 - Sama_0143 0.85 +0.8 165,271 + +0.5 165,274 + +2.1 165,274 + +0.5 165,274 + +0.6 165,274 + +1.2 165,274 + -1.0 165,275 - -0.5 165,275 - -0.7 165,275 - -2.2 165,275 - +0.7 165,275 - -1.3 165,275 - +0.7 165,275 - -2.2 165,275 - +2.1 165,291 + +2.2 165,297 + +1.4 165,312 + -2.5 165,312 + +1.0 165,313 - +0.6 165,346 + -0.4 165,347 - -0.7 165,347 - -1.6 165,431 + +0.1 165,432 - -0.7 165,646 + +1.9 165,647 - -0.2 165,647 - -1.0 165,647 - -0.4 165,689 - +0.4 165,744 + -1.2 165,744 + +0.2 165,744 + -2.3 165,745 - +1.4 165,745 - -0.1 165,745 - -1.9 165,745 - -1.0 165,756 - -2.3 165,756 - +0.0 165,773 + -0.7 165,773 + -0.3 165,774 - +2.0 165,774 - +2.4 165,779 + +0.4 165,779 + +0.3 165,779 + -0.4 165,780 - -2.6 165,780 - +0.6 165,782 + +0.5 165,828 + +1.1 165,828 + -1.0 165,828 + -0.3 165,828 + -0.4 165,828 + -0.4 165,828 + -0.1 165,828 + -2.3 165,828 + +0.0 165,829 - +0.4 165,829 - -1.2 165,829 - +0.2 165,834 + -2.8 165,835 - +1.9 165,835 - -0.5 165,859 + -0.0 165,859 + -3.2 165,860 - -1.0 165,865 + +2.2 165,932 + +2.1 165,933 - +1.8 165,933 - -0.4 165,971 + -1.4 165,971 + -2.2 165,971 + +2.0 165,971 + -1.7 165,971 + +1.6 165,971 + +0.5 165,971 + -0.4 165,971 + -1.7 165,972 - -1.0 165,972 - -0.4 165,972 - -2.8 165,972 - +0.8 165,972 - +2.6 165,972 - +1.2 165,972 - +0.6 165,972 - +1.1 165,974 + +1.6 165,974 + -1.5 165,974 + +0.2 165,974 + -0.7 165,975 - +1.5 165,975 - +3.3 165,975 - -1.4 165,975 - -0.6 165,975 - -1.1 166,015 - +1.9 166,015 - -2.7 166,040 + -1.3 166,041 - -1.1 166,075 - Sama_0144 0.11 -0.7 166,075 - Sama_0144 0.11 -1.0 166,075 - Sama_0144 0.11 +1.2 166,075 - Sama_0144 0.11 +3.0 166,136 + Sama_0144 0.14 -1.0 166,136 + Sama_0144 0.14 +1.6 166,136 + Sama_0144 0.14 -0.6 166,136 + Sama_0144 0.14 -0.2 166,137 - Sama_0144 0.14 +0.8 166,137 - Sama_0144 0.14 -2.0 166,137 - Sama_0144 0.14 -3.1 166,154 + Sama_0144 0.15 -2.8 166,154 + Sama_0144 0.15 -0.1 166,154 + Sama_0144 0.15 +1.1 166,155 - Sama_0144 0.15 +0.8 166,155 - Sama_0144 0.15 -1.4 166,155 - Sama_0144 0.15 -0.7 166,155 - Sama_0144 0.15 +0.0 166,155 - Sama_0144 0.15 -1.5 166,157 + Sama_0144 0.15 -3.4 166,157 + Sama_0144 0.15 +0.8 166,157 + Sama_0144 0.15 +1.0 166,157 + Sama_0144 0.15 -2.9 166,157 + Sama_0144 0.15 -1.3 166,157 + Sama_0144 0.15 -0.4 166,157 + Sama_0144 0.15 +1.8 166,157 + Sama_0144 0.15 -1.5 166,157 + Sama_0144 0.15 +1.8 166,158 - Sama_0144 0.15 +3.1 166,158 - Sama_0144 0.15 -0.3 166,158 - Sama_0144 0.15 -1.5 166,158 - Sama_0144 0.15 -0.4 166,158 - Sama_0144 0.15 +0.5 166,158 - Sama_0144 0.15 -1.1 166,158 - Sama_0144 0.15 -0.6 166,158 - Sama_0144 0.15 +1.1 166,160 + Sama_0144 0.15 +1.0
Or see this region's nucleotide sequence