Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2996

Experiment: MoLS4 with L-Serine (N) without Molybdate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2995 and DVU2996 are separated by 154 nucleotidesDVU2996 and DVU2997 are separated by 1 nucleotidesDVU2997 and DVU2998 are separated by 29 nucleotides DVU2995: DVU2995 - glycosyl transferase, group 1 family protein (TIGR), at 3,105,499 to 3,106,662 DVU2995 DVU2996: DVU2996 - NAD-dependent epimerase/dehydratase family protein (TIGR), at 3,106,817 to 3,107,740 DVU2996 DVU2997: DVU2997 - hypothetical protein (TIGR), at 3,107,742 to 3,108,518 DVU2997 DVU2998: DVU2998 - hypothetical protein (TIGR), at 3,108,548 to 3,109,882 DVU2998 Position (kb) 3106 3107 3108Strain fitness (log2 ratio) -1 0 1at 3105.901 kb on + strand, within DVU2995at 3105.909 kb on - strand, within DVU2995at 3105.918 kb on + strand, within DVU2995at 3105.930 kb on + strand, within DVU2995at 3106.010 kb on + strand, within DVU2995at 3106.010 kb on + strand, within DVU2995at 3106.018 kb on - strand, within DVU2995at 3106.028 kb on - strand, within DVU2995at 3106.053 kb on - strand, within DVU2995at 3106.072 kb on - strand, within DVU2995at 3106.173 kb on + strand, within DVU2995at 3106.178 kb on + strand, within DVU2995at 3106.186 kb on + strand, within DVU2995at 3106.201 kb on - strand, within DVU2995at 3106.230 kb on + strand, within DVU2995at 3106.393 kb on + strand, within DVU2995at 3106.498 kb on + strand, within DVU2995at 3106.594 kb on - strandat 3106.644 kb on - strandat 3106.689 kb on + strandat 3106.725 kb on + strandat 3106.806 kb on - strandat 3106.812 kb on - strandat 3106.834 kb on - strandat 3107.065 kb on + strand, within DVU2996at 3107.095 kb on - strand, within DVU2996at 3107.147 kb on + strand, within DVU2996at 3107.249 kb on + strand, within DVU2996at 3107.257 kb on - strand, within DVU2996at 3107.271 kb on + strand, within DVU2996at 3107.415 kb on + strand, within DVU2996at 3107.441 kb on - strand, within DVU2996at 3107.486 kb on - strand, within DVU2996at 3107.522 kb on + strand, within DVU2996at 3107.537 kb on + strand, within DVU2996at 3107.545 kb on - strand, within DVU2996at 3107.572 kb on - strand, within DVU2996at 3107.609 kb on + strand, within DVU2996at 3107.619 kb on + strand, within DVU2996at 3107.634 kb on + strand, within DVU2996at 3107.637 kb on - strand, within DVU2996at 3107.643 kb on + strand, within DVU2996at 3107.660 kb on - strandat 3107.666 kb on + strandat 3107.721 kb on + strandat 3107.733 kb on + strandat 3107.778 kb on - strandat 3107.787 kb on - strandat 3107.862 kb on - strand, within DVU2997at 3107.890 kb on - strand, within DVU2997at 3107.907 kb on + strand, within DVU2997at 3107.917 kb on + strand, within DVU2997at 3107.939 kb on + strand, within DVU2997at 3107.939 kb on + strand, within DVU2997at 3107.986 kb on + strand, within DVU2997at 3108.004 kb on - strand, within DVU2997at 3108.010 kb on + strand, within DVU2997at 3108.018 kb on - strand, within DVU2997at 3108.018 kb on - strand, within DVU2997at 3108.135 kb on - strand, within DVU2997at 3108.247 kb on - strand, within DVU2997at 3108.249 kb on + strand, within DVU2997at 3108.249 kb on + strand, within DVU2997at 3108.249 kb on + strand, within DVU2997at 3108.254 kb on + strand, within DVU2997at 3108.257 kb on - strand, within DVU2997at 3108.257 kb on - strand, within DVU2997at 3108.276 kb on + strand, within DVU2997at 3108.291 kb on + strand, within DVU2997at 3108.298 kb on + strand, within DVU2997at 3108.334 kb on + strand, within DVU2997at 3108.366 kb on + strand, within DVU2997at 3108.387 kb on - strand, within DVU2997at 3108.396 kb on + strand, within DVU2997at 3108.396 kb on + strand, within DVU2997at 3108.404 kb on - strand, within DVU2997at 3108.447 kb on - strandat 3108.447 kb on - strandat 3108.478 kb on - strandat 3108.590 kb on + strandat 3108.590 kb on + strandat 3108.620 kb on - strandat 3108.658 kb on + strandat 3108.688 kb on - strand, within DVU2998at 3108.700 kb on + strand, within DVU2998at 3108.705 kb on + strand, within DVU2998at 3108.735 kb on - strand, within DVU2998

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N) without Molybdate
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3,105,901 + DVU2995 0.35 -1.2
3,105,909 - DVU2995 0.35 -1.3
3,105,918 + DVU2995 0.36 -1.7
3,105,930 + DVU2995 0.37 -0.8
3,106,010 + DVU2995 0.44 -0.4
3,106,010 + DVU2995 0.44 -0.2
3,106,018 - DVU2995 0.45 -1.0
3,106,028 - DVU2995 0.45 +0.2
3,106,053 - DVU2995 0.48 -0.3
3,106,072 - DVU2995 0.49 +1.2
3,106,173 + DVU2995 0.58 -0.3
3,106,178 + DVU2995 0.58 -0.3
3,106,186 + DVU2995 0.59 -0.8
3,106,201 - DVU2995 0.60 -0.1
3,106,230 + DVU2995 0.63 -0.2
3,106,393 + DVU2995 0.77 -1.0
3,106,498 + DVU2995 0.86 -0.3
3,106,594 - -0.7
3,106,644 - -1.7
3,106,689 + -0.5
3,106,725 + +0.3
3,106,806 - -0.1
3,106,812 - -0.8
3,106,834 - +0.1
3,107,065 + DVU2996 0.27 +0.5
3,107,095 - DVU2996 0.30 -0.2
3,107,147 + DVU2996 0.36 -0.7
3,107,249 + DVU2996 0.47 -1.0
3,107,257 - DVU2996 0.48 -0.8
3,107,271 + DVU2996 0.49 -0.1
3,107,415 + DVU2996 0.65 -0.6
3,107,441 - DVU2996 0.68 -0.8
3,107,486 - DVU2996 0.72 -0.1
3,107,522 + DVU2996 0.76 -1.2
3,107,537 + DVU2996 0.78 -0.8
3,107,545 - DVU2996 0.79 -0.7
3,107,572 - DVU2996 0.82 -0.7
3,107,609 + DVU2996 0.86 -1.4
3,107,619 + DVU2996 0.87 -0.4
3,107,634 + DVU2996 0.88 +0.1
3,107,637 - DVU2996 0.89 -0.5
3,107,643 + DVU2996 0.89 -0.7
3,107,660 - -0.4
3,107,666 + +1.3
3,107,721 + -1.1
3,107,733 + +0.0
3,107,778 - +0.5
3,107,787 - +0.0
3,107,862 - DVU2997 0.15 +0.2
3,107,890 - DVU2997 0.19 -0.7
3,107,907 + DVU2997 0.21 +0.3
3,107,917 + DVU2997 0.23 -0.4
3,107,939 + DVU2997 0.25 -1.4
3,107,939 + DVU2997 0.25 -0.6
3,107,986 + DVU2997 0.31 -0.7
3,108,004 - DVU2997 0.34 -0.1
3,108,010 + DVU2997 0.34 -1.5
3,108,018 - DVU2997 0.36 -0.8
3,108,018 - DVU2997 0.36 -0.2
3,108,135 - DVU2997 0.51 -0.9
3,108,247 - DVU2997 0.65 -0.7
3,108,249 + DVU2997 0.65 -0.9
3,108,249 + DVU2997 0.65 -0.5
3,108,249 + DVU2997 0.65 -0.8
3,108,254 + DVU2997 0.66 -1.0
3,108,257 - DVU2997 0.66 -1.0
3,108,257 - DVU2997 0.66 -0.6
3,108,276 + DVU2997 0.69 -0.4
3,108,291 + DVU2997 0.71 -0.8
3,108,298 + DVU2997 0.72 +1.2
3,108,334 + DVU2997 0.76 -0.2
3,108,366 + DVU2997 0.80 -0.6
3,108,387 - DVU2997 0.83 +0.0
3,108,396 + DVU2997 0.84 -1.0
3,108,396 + DVU2997 0.84 -1.2
3,108,404 - DVU2997 0.85 +0.2
3,108,447 - -0.7
3,108,447 - +0.5
3,108,478 - -1.4
3,108,590 + -0.3
3,108,590 + -0.5
3,108,620 - -0.2
3,108,658 + -1.0
3,108,688 - DVU2998 0.10 -0.5
3,108,700 + DVU2998 0.11 -0.4
3,108,705 + DVU2998 0.12 -0.3
3,108,735 - DVU2998 0.14 -0.3

Or see this region's nucleotide sequence