Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2148

Experiment: MoLS4 with L-Serine (N) without Molybdate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsda and DVU2148 are separated by 474 nucleotidesDVU2148 and DVU2149 are separated by 114 nucleotides DVU2147: sda - L-serine dehydratase, putative (TIGR), at 2,244,026 to 2,245,534 sda DVU2148: DVU2148 - CBS/transporter associated domain protein (TIGR), at 2,246,009 to 2,247,403 DVU2148 DVU2149: DVU2149 - conserved hypothetical protein (TIGR), at 2,247,518 to 2,249,257 DVU2149 Position (kb) 2246 2247 2248Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2245.037 kb on + strand, within sdaat 2245.100 kb on - strand, within sdaat 2245.124 kb on + strand, within sdaat 2245.130 kb on + strand, within sdaat 2245.130 kb on + strand, within sdaat 2245.131 kb on - strand, within sdaat 2245.132 kb on - strand, within sdaat 2245.138 kb on - strand, within sdaat 2245.236 kb on + strand, within sdaat 2245.366 kb on + strand, within sdaat 2245.476 kb on + strandat 2245.503 kb on - strandat 2245.536 kb on + strandat 2245.732 kb on - strandat 2245.963 kb on - strandat 2245.963 kb on - strandat 2245.965 kb on + strandat 2245.973 kb on - strandat 2245.980 kb on + strandat 2245.988 kb on - strandat 2246.057 kb on - strandat 2246.199 kb on - strand, within DVU2148at 2246.209 kb on - strand, within DVU2148at 2246.211 kb on + strand, within DVU2148at 2246.211 kb on + strand, within DVU2148at 2246.300 kb on - strand, within DVU2148at 2246.349 kb on + strand, within DVU2148at 2246.512 kb on - strand, within DVU2148at 2246.531 kb on + strand, within DVU2148at 2246.572 kb on + strand, within DVU2148at 2246.824 kb on - strand, within DVU2148at 2246.849 kb on - strand, within DVU2148at 2246.908 kb on + strand, within DVU2148at 2246.962 kb on + strand, within DVU2148at 2247.038 kb on - strand, within DVU2148at 2247.105 kb on + strand, within DVU2148at 2247.128 kb on + strand, within DVU2148at 2247.229 kb on + strand, within DVU2148at 2247.294 kb on + strandat 2247.314 kb on + strandat 2247.344 kb on + strandat 2247.419 kb on + strandat 2247.515 kb on + strandat 2247.621 kb on - strandat 2247.712 kb on - strand, within DVU2149at 2247.802 kb on + strand, within DVU2149at 2247.886 kb on + strand, within DVU2149at 2247.894 kb on - strand, within DVU2149at 2247.953 kb on + strand, within DVU2149at 2247.953 kb on - strand, within DVU2149at 2247.953 kb on - strand, within DVU2149at 2247.953 kb on - strand, within DVU2149at 2247.974 kb on + strand, within DVU2149at 2247.984 kb on - strand, within DVU2149at 2248.072 kb on + strand, within DVU2149at 2248.084 kb on - strand, within DVU2149at 2248.100 kb on - strand, within DVU2149at 2248.106 kb on - strand, within DVU2149at 2248.158 kb on + strand, within DVU2149at 2248.166 kb on - strand, within DVU2149at 2248.166 kb on - strand, within DVU2149at 2248.229 kb on - strand, within DVU2149at 2248.229 kb on - strand, within DVU2149at 2248.229 kb on - strand, within DVU2149at 2248.252 kb on - strand, within DVU2149at 2248.269 kb on + strand, within DVU2149at 2248.277 kb on - strand, within DVU2149at 2248.328 kb on - strand, within DVU2149at 2248.390 kb on - strand, within DVU2149

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N) without Molybdate
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2,245,037 + sda DVU2147 0.67 -4.6
2,245,100 - sda DVU2147 0.71 -2.5
2,245,124 + sda DVU2147 0.73 -2.5
2,245,130 + sda DVU2147 0.73 -1.8
2,245,130 + sda DVU2147 0.73 -2.5
2,245,131 - sda DVU2147 0.73 -2.5
2,245,132 - sda DVU2147 0.73 -2.0
2,245,138 - sda DVU2147 0.74 -2.3
2,245,236 + sda DVU2147 0.80 -4.1
2,245,366 + sda DVU2147 0.89 -2.3
2,245,476 + -3.9
2,245,503 - -2.5
2,245,536 + -2.9
2,245,732 - +2.1
2,245,963 - +3.0
2,245,963 - +3.3
2,245,965 + +2.5
2,245,973 - +2.7
2,245,980 + +1.3
2,245,988 - +2.0
2,246,057 - +2.3
2,246,199 - DVU2148 0.14 +2.0
2,246,209 - DVU2148 0.14 +1.9
2,246,211 + DVU2148 0.14 +1.8
2,246,211 + DVU2148 0.14 +1.4
2,246,300 - DVU2148 0.21 +2.6
2,246,349 + DVU2148 0.24 +1.9
2,246,512 - DVU2148 0.36 +1.9
2,246,531 + DVU2148 0.37 +1.0
2,246,572 + DVU2148 0.40 +0.3
2,246,824 - DVU2148 0.58 +1.7
2,246,849 - DVU2148 0.60 +1.5
2,246,908 + DVU2148 0.64 +0.7
2,246,962 + DVU2148 0.68 +1.1
2,247,038 - DVU2148 0.74 +0.6
2,247,105 + DVU2148 0.79 +0.2
2,247,128 + DVU2148 0.80 +0.4
2,247,229 + DVU2148 0.87 +0.2
2,247,294 + -0.3
2,247,314 + -0.2
2,247,344 + +0.4
2,247,419 + +0.1
2,247,515 + -0.2
2,247,621 - +0.8
2,247,712 - DVU2149 0.11 +0.3
2,247,802 + DVU2149 0.16 +0.4
2,247,886 + DVU2149 0.21 -0.0
2,247,894 - DVU2149 0.22 +1.3
2,247,953 + DVU2149 0.25 +0.1
2,247,953 - DVU2149 0.25 +0.3
2,247,953 - DVU2149 0.25 +0.3
2,247,953 - DVU2149 0.25 -0.3
2,247,974 + DVU2149 0.26 -0.3
2,247,984 - DVU2149 0.27 +0.7
2,248,072 + DVU2149 0.32 +1.3
2,248,084 - DVU2149 0.33 -0.2
2,248,100 - DVU2149 0.33 +0.3
2,248,106 - DVU2149 0.34 +0.7
2,248,158 + DVU2149 0.37 +0.0
2,248,166 - DVU2149 0.37 +0.6
2,248,166 - DVU2149 0.37 +0.5
2,248,229 - DVU2149 0.41 +0.1
2,248,229 - DVU2149 0.41 -0.9
2,248,229 - DVU2149 0.41 +0.0
2,248,252 - DVU2149 0.42 +0.4
2,248,269 + DVU2149 0.43 +0.3
2,248,277 - DVU2149 0.44 +0.1
2,248,328 - DVU2149 0.47 +0.4
2,248,390 - DVU2149 0.50 -0.6

Or see this region's nucleotide sequence