Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.999.1

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.997.1 and Xcc-8004.998.1 are separated by 1 nucleotidesXcc-8004.998.1 and Xcc-8004.999.1 are separated by 267 nucleotidesXcc-8004.999.1 and Xcc-8004.1000.1 overlap by 4 nucleotidesXcc-8004.1000.1 and Xcc-8004.1001.1 are separated by 164 nucleotides Xcc-8004.997.1: Xcc-8004.997.1 - Possible GRAM domain, at 944,287 to 944,658 Xcc-8004.997.1 Xcc-8004.998.1: Xcc-8004.998.1 - putative; ORF located using Glimmer/Genemark, at 944,660 to 945,202 Xcc-8004.998.1 Xcc-8004.999.1: Xcc-8004.999.1 - putative; ORF located using Glimmer/Genemark, at 945,470 to 945,889 Xcc-8004.999.1 Xcc-8004.1000.1: Xcc-8004.1000.1 - putative; ORF located using Glimmer/Genemark, at 945,886 to 946,452 Xcc-8004.1000.1 Xcc-8004.1001.1: Xcc-8004.1001.1 - FIG01213217: hypothetical protein, at 946,617 to 947,897 Xcc-8004.1001.1 Position (kb) 945 946Strain fitness (log2 ratio) -2 -1 0 1at 945.069 kb on + strand, within Xcc-8004.998.1at 945.070 kb on - strand, within Xcc-8004.998.1at 945.097 kb on - strand, within Xcc-8004.998.1at 945.483 kb on - strandat 945.483 kb on - strandat 945.483 kb on - strandat 945.521 kb on + strand, within Xcc-8004.999.1at 945.521 kb on + strand, within Xcc-8004.999.1at 945.521 kb on + strand, within Xcc-8004.999.1at 945.535 kb on - strand, within Xcc-8004.999.1at 945.558 kb on + strand, within Xcc-8004.999.1at 945.559 kb on - strand, within Xcc-8004.999.1at 945.559 kb on - strand, within Xcc-8004.999.1at 945.603 kb on + strand, within Xcc-8004.999.1at 945.604 kb on - strand, within Xcc-8004.999.1at 945.604 kb on - strand, within Xcc-8004.999.1at 945.741 kb on + strand, within Xcc-8004.999.1at 945.982 kb on + strand, within Xcc-8004.1000.1at 945.983 kb on - strand, within Xcc-8004.1000.1at 945.983 kb on - strand, within Xcc-8004.1000.1at 946.046 kb on + strand, within Xcc-8004.1000.1at 946.046 kb on + strand, within Xcc-8004.1000.1at 946.046 kb on + strand, within Xcc-8004.1000.1at 946.047 kb on - strand, within Xcc-8004.1000.1at 946.269 kb on + strand, within Xcc-8004.1000.1at 946.558 kb on + strandat 946.661 kb on - strandat 946.661 kb on - strandat 946.732 kb on + strandat 946.732 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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945,069 + Xcc-8004.998.1 0.75 -1.9
945,070 - Xcc-8004.998.1 0.76 -0.3
945,097 - Xcc-8004.998.1 0.80 -0.3
945,483 - -0.1
945,483 - -0.8
945,483 - -0.2
945,521 + Xcc-8004.999.1 0.12 +0.0
945,521 + Xcc-8004.999.1 0.12 -2.0
945,521 + Xcc-8004.999.1 0.12 -0.8
945,535 - Xcc-8004.999.1 0.15 +0.3
945,558 + Xcc-8004.999.1 0.21 -2.1
945,559 - Xcc-8004.999.1 0.21 -0.3
945,559 - Xcc-8004.999.1 0.21 +0.1
945,603 + Xcc-8004.999.1 0.32 -1.1
945,604 - Xcc-8004.999.1 0.32 -0.8
945,604 - Xcc-8004.999.1 0.32 -0.8
945,741 + Xcc-8004.999.1 0.65 +0.5
945,982 + Xcc-8004.1000.1 0.17 +1.6
945,983 - Xcc-8004.1000.1 0.17 -1.6
945,983 - Xcc-8004.1000.1 0.17 -0.5
946,046 + Xcc-8004.1000.1 0.28 +0.3
946,046 + Xcc-8004.1000.1 0.28 -0.7
946,046 + Xcc-8004.1000.1 0.28 +1.5
946,047 - Xcc-8004.1000.1 0.28 +1.5
946,269 + Xcc-8004.1000.1 0.68 -1.9
946,558 + -0.1
946,661 - -0.8
946,661 - -0.3
946,732 + +0.5
946,732 + -0.6

Or see this region's nucleotide sequence