Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.996.1 and Xcc-8004.997.1 are separated by 185 nucleotides Xcc-8004.997.1 and Xcc-8004.998.1 are separated by 1 nucleotides Xcc-8004.998.1 and Xcc-8004.999.1 are separated by 267 nucleotides Xcc-8004.999.1 and Xcc-8004.1000.1 overlap by 4 nucleotides
Xcc-8004.996.1: Xcc-8004.996.1 - Rhamnogalacturonate lyase precursor (EC 4.2.2.-), at 943,400 to 944,101
Xcc-8004.996.1
Xcc-8004.997.1: Xcc-8004.997.1 - Possible GRAM domain, at 944,287 to 944,658
Xcc-8004.997.1
Xcc-8004.998.1: Xcc-8004.998.1 - putative; ORF located using Glimmer/Genemark, at 944,660 to 945,202
Xcc-8004.998.1
Xcc-8004.999.1: Xcc-8004.999.1 - putative; ORF located using Glimmer/Genemark, at 945,470 to 945,889
Xcc-8004.999.1
Xcc-8004.1000.1: Xcc-8004.1000.1 - putative; ORF located using Glimmer/Genemark, at 945,886 to 946,452
Xcc-8004.1000.1
Position (kb) 944
945
946 Strain fitness (log2 ratio) -2
-1
0
1 at 943.734 kb on + strand, within Xcc-8004.996.1 at 943.735 kb on - strand, within Xcc-8004.996.1 at 943.735 kb on - strand, within Xcc-8004.996.1 at 943.735 kb on - strand, within Xcc-8004.996.1 at 943.735 kb on - strand, within Xcc-8004.996.1 at 943.764 kb on + strand, within Xcc-8004.996.1 at 943.764 kb on + strand, within Xcc-8004.996.1 at 943.765 kb on - strand, within Xcc-8004.996.1 at 943.765 kb on - strand, within Xcc-8004.996.1 at 943.765 kb on - strand, within Xcc-8004.996.1 at 943.765 kb on - strand, within Xcc-8004.996.1 at 943.767 kb on + strand, within Xcc-8004.996.1 at 943.768 kb on - strand, within Xcc-8004.996.1 at 944.034 kb on + strand at 944.035 kb on - strand at 944.127 kb on + strand at 944.375 kb on - strand, within Xcc-8004.997.1 at 944.375 kb on - strand, within Xcc-8004.997.1 at 944.375 kb on - strand, within Xcc-8004.997.1 at 944.375 kb on - strand, within Xcc-8004.997.1 at 945.069 kb on + strand, within Xcc-8004.998.1 at 945.070 kb on - strand, within Xcc-8004.998.1 at 945.097 kb on - strand, within Xcc-8004.998.1 at 945.483 kb on - strand at 945.483 kb on - strand at 945.483 kb on - strand at 945.521 kb on + strand, within Xcc-8004.999.1 at 945.521 kb on + strand, within Xcc-8004.999.1 at 945.521 kb on + strand, within Xcc-8004.999.1 at 945.535 kb on - strand, within Xcc-8004.999.1 at 945.558 kb on + strand, within Xcc-8004.999.1 at 945.559 kb on - strand, within Xcc-8004.999.1 at 945.559 kb on - strand, within Xcc-8004.999.1 at 945.603 kb on + strand, within Xcc-8004.999.1 at 945.604 kb on - strand, within Xcc-8004.999.1 at 945.604 kb on - strand, within Xcc-8004.999.1 at 945.741 kb on + strand, within Xcc-8004.999.1 at 945.982 kb on + strand, within Xcc-8004.1000.1 at 945.983 kb on - strand, within Xcc-8004.1000.1 at 945.983 kb on - strand, within Xcc-8004.1000.1 at 946.046 kb on + strand, within Xcc-8004.1000.1 at 946.046 kb on + strand, within Xcc-8004.1000.1 at 946.046 kb on + strand, within Xcc-8004.1000.1 at 946.047 kb on - strand, within Xcc-8004.1000.1
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 943,734 + Xcc-8004.996.1 0.48 -1.1 943,735 - Xcc-8004.996.1 0.48 +0.2 943,735 - Xcc-8004.996.1 0.48 +0.1 943,735 - Xcc-8004.996.1 0.48 -0.0 943,735 - Xcc-8004.996.1 0.48 -1.2 943,764 + Xcc-8004.996.1 0.52 +0.1 943,764 + Xcc-8004.996.1 0.52 +0.6 943,765 - Xcc-8004.996.1 0.52 +0.7 943,765 - Xcc-8004.996.1 0.52 +0.7 943,765 - Xcc-8004.996.1 0.52 +0.2 943,765 - Xcc-8004.996.1 0.52 +1.1 943,767 + Xcc-8004.996.1 0.52 -0.4 943,768 - Xcc-8004.996.1 0.52 -0.5 944,034 + -1.5 944,035 - -0.3 944,127 + -0.1 944,375 - Xcc-8004.997.1 0.24 -0.2 944,375 - Xcc-8004.997.1 0.24 -1.8 944,375 - Xcc-8004.997.1 0.24 +0.4 944,375 - Xcc-8004.997.1 0.24 -2.5 945,069 + Xcc-8004.998.1 0.75 -1.9 945,070 - Xcc-8004.998.1 0.76 -0.3 945,097 - Xcc-8004.998.1 0.80 -0.3 945,483 - -0.1 945,483 - -0.8 945,483 - -0.2 945,521 + Xcc-8004.999.1 0.12 +0.0 945,521 + Xcc-8004.999.1 0.12 -2.0 945,521 + Xcc-8004.999.1 0.12 -0.8 945,535 - Xcc-8004.999.1 0.15 +0.3 945,558 + Xcc-8004.999.1 0.21 -2.1 945,559 - Xcc-8004.999.1 0.21 -0.3 945,559 - Xcc-8004.999.1 0.21 +0.1 945,603 + Xcc-8004.999.1 0.32 -1.1 945,604 - Xcc-8004.999.1 0.32 -0.8 945,604 - Xcc-8004.999.1 0.32 -0.8 945,741 + Xcc-8004.999.1 0.65 +0.5 945,982 + Xcc-8004.1000.1 0.17 +1.6 945,983 - Xcc-8004.1000.1 0.17 -1.6 945,983 - Xcc-8004.1000.1 0.17 -0.5 946,046 + Xcc-8004.1000.1 0.28 +0.3 946,046 + Xcc-8004.1000.1 0.28 -0.7 946,046 + Xcc-8004.1000.1 0.28 +1.5 946,047 - Xcc-8004.1000.1 0.28 +1.5
Or see this region's nucleotide sequence