Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.837.1

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.836.1 and Xcc-8004.837.1 are separated by 470 nucleotidesXcc-8004.837.1 and Xcc-8004.838.1 are separated by 68 nucleotides Xcc-8004.836.1: Xcc-8004.836.1 - outer membrane lipoprotein, at 786,144 to 786,920 Xcc-8004.836.1 Xcc-8004.837.1: Xcc-8004.837.1 - FIG01210690: hypothetical protein, at 787,391 to 787,702 Xcc-8004.837.1 Xcc-8004.838.1: Xcc-8004.838.1 - Prolyl endopeptidase (EC 3.4.21.26), at 787,771 to 789,864 Xcc-8004.838.1 Position (kb) 787 788Strain fitness (log2 ratio) -2 -1 0 1 2at 786.394 kb on + strand, within Xcc-8004.836.1at 786.395 kb on - strand, within Xcc-8004.836.1at 786.395 kb on - strand, within Xcc-8004.836.1at 786.395 kb on - strand, within Xcc-8004.836.1at 786.395 kb on - strand, within Xcc-8004.836.1at 786.395 kb on - strand, within Xcc-8004.836.1at 786.494 kb on - strand, within Xcc-8004.836.1at 786.529 kb on + strand, within Xcc-8004.836.1at 786.529 kb on + strand, within Xcc-8004.836.1at 786.529 kb on + strand, within Xcc-8004.836.1at 786.530 kb on - strand, within Xcc-8004.836.1at 786.530 kb on - strand, within Xcc-8004.836.1at 786.530 kb on - strand, within Xcc-8004.836.1at 786.530 kb on - strand, within Xcc-8004.836.1at 786.530 kb on - strand, within Xcc-8004.836.1at 786.589 kb on + strand, within Xcc-8004.836.1at 786.590 kb on - strand, within Xcc-8004.836.1at 786.590 kb on - strand, within Xcc-8004.836.1at 787.066 kb on + strandat 787.066 kb on + strandat 787.066 kb on + strandat 787.067 kb on - strandat 787.067 kb on - strandat 787.067 kb on - strandat 787.067 kb on - strandat 787.067 kb on - strandat 787.067 kb on - strandat 787.067 kb on - strandat 787.070 kb on + strandat 787.070 kb on + strandat 787.070 kb on + strandat 787.070 kb on + strandat 787.070 kb on + strandat 787.071 kb on - strandat 787.071 kb on - strandat 787.071 kb on - strandat 787.071 kb on - strandat 787.081 kb on + strandat 787.081 kb on + strandat 787.081 kb on + strandat 787.081 kb on + strandat 787.183 kb on - strandat 787.482 kb on + strand, within Xcc-8004.837.1at 787.577 kb on + strand, within Xcc-8004.837.1at 787.578 kb on - strand, within Xcc-8004.837.1at 787.731 kb on + strandat 787.731 kb on + strandat 787.732 kb on - strandat 787.732 kb on - strandat 787.736 kb on + strandat 787.736 kb on + strandat 787.737 kb on - strandat 787.737 kb on - strandat 787.737 kb on - strandat 787.737 kb on - strandat 787.861 kb on + strandat 787.861 kb on + strandat 787.861 kb on + strandat 787.862 kb on - strandat 787.862 kb on - strandat 787.862 kb on - strandat 787.862 kb on - strandat 788.035 kb on + strand, within Xcc-8004.838.1at 788.036 kb on - strand, within Xcc-8004.838.1at 788.036 kb on - strand, within Xcc-8004.838.1at 788.038 kb on + strand, within Xcc-8004.838.1at 788.038 kb on + strand, within Xcc-8004.838.1at 788.038 kb on + strand, within Xcc-8004.838.1at 788.038 kb on + strand, within Xcc-8004.838.1at 788.038 kb on + strand, within Xcc-8004.838.1at 788.039 kb on - strand, within Xcc-8004.838.1at 788.039 kb on - strand, within Xcc-8004.838.1at 788.041 kb on + strand, within Xcc-8004.838.1at 788.041 kb on + strand, within Xcc-8004.838.1at 788.041 kb on + strand, within Xcc-8004.838.1at 788.041 kb on + strand, within Xcc-8004.838.1at 788.041 kb on + strand, within Xcc-8004.838.1at 788.042 kb on - strand, within Xcc-8004.838.1at 788.042 kb on - strand, within Xcc-8004.838.1at 788.042 kb on - strand, within Xcc-8004.838.1at 788.042 kb on - strand, within Xcc-8004.838.1at 788.213 kb on - strand, within Xcc-8004.838.1at 788.362 kb on + strand, within Xcc-8004.838.1at 788.362 kb on + strand, within Xcc-8004.838.1at 788.362 kb on + strand, within Xcc-8004.838.1at 788.363 kb on - strand, within Xcc-8004.838.1at 788.368 kb on + strand, within Xcc-8004.838.1at 788.369 kb on - strand, within Xcc-8004.838.1at 788.370 kb on + strand, within Xcc-8004.838.1at 788.370 kb on + strand, within Xcc-8004.838.1at 788.467 kb on + strand, within Xcc-8004.838.1at 788.468 kb on - strand, within Xcc-8004.838.1at 788.468 kb on - strand, within Xcc-8004.838.1at 788.468 kb on - strand, within Xcc-8004.838.1at 788.468 kb on - strand, within Xcc-8004.838.1at 788.468 kb on - strand, within Xcc-8004.838.1at 788.468 kb on - strand, within Xcc-8004.838.1at 788.468 kb on - strand, within Xcc-8004.838.1at 788.468 kb on - strand, within Xcc-8004.838.1at 788.491 kb on + strand, within Xcc-8004.838.1at 788.491 kb on + strand, within Xcc-8004.838.1at 788.491 kb on + strand, within Xcc-8004.838.1at 788.491 kb on + strand, within Xcc-8004.838.1at 788.491 kb on + strand, within Xcc-8004.838.1at 788.491 kb on + strand, within Xcc-8004.838.1at 788.491 kb on + strand, within Xcc-8004.838.1at 788.491 kb on + strand, within Xcc-8004.838.1at 788.491 kb on + strand, within Xcc-8004.838.1at 788.491 kb on + strand, within Xcc-8004.838.1at 788.491 kb on + strand, within Xcc-8004.838.1at 788.491 kb on + strand, within Xcc-8004.838.1at 788.491 kb on + strand, within Xcc-8004.838.1at 788.491 kb on + strand, within Xcc-8004.838.1at 788.491 kb on + strand, within Xcc-8004.838.1at 788.491 kb on + strand, within Xcc-8004.838.1at 788.492 kb on - strand, within Xcc-8004.838.1at 788.492 kb on - strand, within Xcc-8004.838.1at 788.492 kb on - strand, within Xcc-8004.838.1at 788.492 kb on - strand, within Xcc-8004.838.1at 788.492 kb on - strand, within Xcc-8004.838.1at 788.492 kb on - strand, within Xcc-8004.838.1at 788.492 kb on - strand, within Xcc-8004.838.1at 788.492 kb on - strand, within Xcc-8004.838.1at 788.492 kb on - strand, within Xcc-8004.838.1at 788.492 kb on - strand, within Xcc-8004.838.1at 788.492 kb on - strand, within Xcc-8004.838.1at 788.492 kb on - strand, within Xcc-8004.838.1at 788.492 kb on - strand, within Xcc-8004.838.1at 788.492 kb on - strand, within Xcc-8004.838.1at 788.492 kb on - strand, within Xcc-8004.838.1at 788.560 kb on + strand, within Xcc-8004.838.1at 788.561 kb on - strand, within Xcc-8004.838.1at 788.561 kb on - strand, within Xcc-8004.838.1at 788.575 kb on + strand, within Xcc-8004.838.1at 788.576 kb on - strand, within Xcc-8004.838.1at 788.576 kb on - strand, within Xcc-8004.838.1at 788.603 kb on + strand, within Xcc-8004.838.1at 788.699 kb on - strand, within Xcc-8004.838.1at 788.699 kb on - strand, within Xcc-8004.838.1at 788.699 kb on - strand, within Xcc-8004.838.1at 788.699 kb on - strand, within Xcc-8004.838.1at 788.699 kb on - strand, within Xcc-8004.838.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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786,394 + Xcc-8004.836.1 0.32 +1.0
786,395 - Xcc-8004.836.1 0.32 -0.5
786,395 - Xcc-8004.836.1 0.32 +0.3
786,395 - Xcc-8004.836.1 0.32 -0.1
786,395 - Xcc-8004.836.1 0.32 -1.7
786,395 - Xcc-8004.836.1 0.32 +0.1
786,494 - Xcc-8004.836.1 0.45 -0.4
786,529 + Xcc-8004.836.1 0.50 -0.3
786,529 + Xcc-8004.836.1 0.50 +0.2
786,529 + Xcc-8004.836.1 0.50 -1.3
786,530 - Xcc-8004.836.1 0.50 +0.1
786,530 - Xcc-8004.836.1 0.50 +0.2
786,530 - Xcc-8004.836.1 0.50 -0.1
786,530 - Xcc-8004.836.1 0.50 +0.3
786,530 - Xcc-8004.836.1 0.50 -1.6
786,589 + Xcc-8004.836.1 0.57 +0.2
786,590 - Xcc-8004.836.1 0.57 +0.4
786,590 - Xcc-8004.836.1 0.57 -0.1
787,066 + +1.0
787,066 + -1.1
787,066 + -0.7
787,067 - -0.4
787,067 - -0.7
787,067 - -0.6
787,067 - +0.2
787,067 - +1.1
787,067 - +0.3
787,067 - +0.7
787,070 + -0.1
787,070 + +0.2
787,070 + -0.1
787,070 + +0.8
787,070 + +2.6
787,071 - -0.2
787,071 - +0.3
787,071 - -0.7
787,071 - -0.6
787,081 + -1.5
787,081 + -1.3
787,081 + -2.7
787,081 + +0.2
787,183 - +0.2
787,482 + Xcc-8004.837.1 0.29 -0.5
787,577 + Xcc-8004.837.1 0.60 -1.5
787,578 - Xcc-8004.837.1 0.60 -1.7
787,731 + +0.5
787,731 + -0.3
787,732 - +0.7
787,732 - +0.0
787,736 + -0.2
787,736 + +0.1
787,737 - +0.1
787,737 - -0.6
787,737 - +0.3
787,737 - -0.2
787,861 + -1.1
787,861 + +0.4
787,861 + +0.8
787,862 - -1.2
787,862 - -0.6
787,862 - +1.1
787,862 - +1.5
788,035 + Xcc-8004.838.1 0.13 -0.9
788,036 - Xcc-8004.838.1 0.13 -0.7
788,036 - Xcc-8004.838.1 0.13 -0.4
788,038 + Xcc-8004.838.1 0.13 +0.4
788,038 + Xcc-8004.838.1 0.13 -1.4
788,038 + Xcc-8004.838.1 0.13 -1.5
788,038 + Xcc-8004.838.1 0.13 +0.8
788,038 + Xcc-8004.838.1 0.13 -0.5
788,039 - Xcc-8004.838.1 0.13 +0.3
788,039 - Xcc-8004.838.1 0.13 +0.4
788,041 + Xcc-8004.838.1 0.13 +0.0
788,041 + Xcc-8004.838.1 0.13 +0.7
788,041 + Xcc-8004.838.1 0.13 +0.0
788,041 + Xcc-8004.838.1 0.13 -0.2
788,041 + Xcc-8004.838.1 0.13 +0.1
788,042 - Xcc-8004.838.1 0.13 -0.3
788,042 - Xcc-8004.838.1 0.13 -0.1
788,042 - Xcc-8004.838.1 0.13 +2.6
788,042 - Xcc-8004.838.1 0.13 +0.3
788,213 - Xcc-8004.838.1 0.21 +0.3
788,362 + Xcc-8004.838.1 0.28 -1.2
788,362 + Xcc-8004.838.1 0.28 -0.7
788,362 + Xcc-8004.838.1 0.28 -0.1
788,363 - Xcc-8004.838.1 0.28 -1.4
788,368 + Xcc-8004.838.1 0.29 -0.2
788,369 - Xcc-8004.838.1 0.29 -1.1
788,370 + Xcc-8004.838.1 0.29 +1.1
788,370 + Xcc-8004.838.1 0.29 -0.9
788,467 + Xcc-8004.838.1 0.33 +0.8
788,468 - Xcc-8004.838.1 0.33 -0.3
788,468 - Xcc-8004.838.1 0.33 -0.3
788,468 - Xcc-8004.838.1 0.33 -0.1
788,468 - Xcc-8004.838.1 0.33 -0.3
788,468 - Xcc-8004.838.1 0.33 -1.3
788,468 - Xcc-8004.838.1 0.33 +0.0
788,468 - Xcc-8004.838.1 0.33 -1.1
788,468 - Xcc-8004.838.1 0.33 -0.7
788,491 + Xcc-8004.838.1 0.34 +0.6
788,491 + Xcc-8004.838.1 0.34 -0.2
788,491 + Xcc-8004.838.1 0.34 -0.3
788,491 + Xcc-8004.838.1 0.34 -0.1
788,491 + Xcc-8004.838.1 0.34 +0.8
788,491 + Xcc-8004.838.1 0.34 -0.1
788,491 + Xcc-8004.838.1 0.34 -0.6
788,491 + Xcc-8004.838.1 0.34 +0.3
788,491 + Xcc-8004.838.1 0.34 -0.1
788,491 + Xcc-8004.838.1 0.34 -0.2
788,491 + Xcc-8004.838.1 0.34 -0.2
788,491 + Xcc-8004.838.1 0.34 -0.8
788,491 + Xcc-8004.838.1 0.34 -0.6
788,491 + Xcc-8004.838.1 0.34 -0.1
788,491 + Xcc-8004.838.1 0.34 -0.7
788,491 + Xcc-8004.838.1 0.34 +1.0
788,492 - Xcc-8004.838.1 0.34 +0.2
788,492 - Xcc-8004.838.1 0.34 +0.0
788,492 - Xcc-8004.838.1 0.34 -0.2
788,492 - Xcc-8004.838.1 0.34 -0.7
788,492 - Xcc-8004.838.1 0.34 +0.5
788,492 - Xcc-8004.838.1 0.34 -0.9
788,492 - Xcc-8004.838.1 0.34 -1.2
788,492 - Xcc-8004.838.1 0.34 +1.3
788,492 - Xcc-8004.838.1 0.34 +1.5
788,492 - Xcc-8004.838.1 0.34 -1.2
788,492 - Xcc-8004.838.1 0.34 +1.0
788,492 - Xcc-8004.838.1 0.34 +1.2
788,492 - Xcc-8004.838.1 0.34 +0.5
788,492 - Xcc-8004.838.1 0.34 +0.4
788,492 - Xcc-8004.838.1 0.34 -0.1
788,560 + Xcc-8004.838.1 0.38 -1.0
788,561 - Xcc-8004.838.1 0.38 +0.7
788,561 - Xcc-8004.838.1 0.38 -2.2
788,575 + Xcc-8004.838.1 0.38 +0.2
788,576 - Xcc-8004.838.1 0.38 -0.7
788,576 - Xcc-8004.838.1 0.38 +0.3
788,603 + Xcc-8004.838.1 0.40 -1.6
788,699 - Xcc-8004.838.1 0.44 +0.4
788,699 - Xcc-8004.838.1 0.44 +0.0
788,699 - Xcc-8004.838.1 0.44 -0.0
788,699 - Xcc-8004.838.1 0.44 +0.8
788,699 - Xcc-8004.838.1 0.44 +0.3

Or see this region's nucleotide sequence