Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.729.1 and Xcc-8004.730.1 are separated by 135 nucleotides Xcc-8004.730.1 and Xcc-8004.731.1 are separated by 90 nucleotides
Xcc-8004.729.1: Xcc-8004.729.1 - DUF1022 domain-containing protein, at 679,556 to 680,503
Xcc-8004.729.1
Xcc-8004.730.1: Xcc-8004.730.1 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 680,639 to 681,229
Xcc-8004.730.1
Xcc-8004.731.1: Xcc-8004.731.1 - hypothetical protein, at 681,320 to 682,042
Xcc-8004.731.1
Position (kb) 680
681
682 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 679.686 kb on + strand, within Xcc-8004.729.1 at 679.686 kb on + strand, within Xcc-8004.729.1 at 679.686 kb on + strand, within Xcc-8004.729.1 at 679.687 kb on - strand, within Xcc-8004.729.1 at 679.687 kb on - strand, within Xcc-8004.729.1 at 679.687 kb on - strand, within Xcc-8004.729.1 at 679.821 kb on + strand, within Xcc-8004.729.1 at 680.066 kb on + strand, within Xcc-8004.729.1 at 680.067 kb on - strand, within Xcc-8004.729.1 at 680.520 kb on + strand at 680.521 kb on - strand at 680.566 kb on + strand at 680.567 kb on - strand at 680.567 kb on - strand at 680.567 kb on - strand at 680.567 kb on - strand at 680.605 kb on + strand at 680.605 kb on + strand at 680.606 kb on - strand at 680.606 kb on - strand at 680.747 kb on + strand, within Xcc-8004.730.1 at 680.747 kb on + strand, within Xcc-8004.730.1 at 680.747 kb on + strand, within Xcc-8004.730.1 at 680.748 kb on - strand, within Xcc-8004.730.1 at 680.748 kb on - strand, within Xcc-8004.730.1 at 680.933 kb on + strand, within Xcc-8004.730.1 at 680.934 kb on - strand, within Xcc-8004.730.1 at 680.934 kb on - strand, within Xcc-8004.730.1 at 681.029 kb on + strand, within Xcc-8004.730.1 at 681.030 kb on - strand, within Xcc-8004.730.1 at 681.030 kb on - strand, within Xcc-8004.730.1 at 681.130 kb on + strand, within Xcc-8004.730.1 at 681.130 kb on + strand, within Xcc-8004.730.1 at 681.131 kb on - strand, within Xcc-8004.730.1 at 681.334 kb on + strand at 681.335 kb on - strand at 681.335 kb on - strand at 681.335 kb on - strand at 681.335 kb on - strand at 681.518 kb on + strand, within Xcc-8004.731.1 at 681.518 kb on + strand, within Xcc-8004.731.1 at 681.519 kb on - strand, within Xcc-8004.731.1 at 681.519 kb on - strand, within Xcc-8004.731.1 at 681.620 kb on + strand, within Xcc-8004.731.1 at 681.620 kb on + strand, within Xcc-8004.731.1 at 681.620 kb on + strand, within Xcc-8004.731.1 at 681.621 kb on - strand, within Xcc-8004.731.1 at 681.621 kb on - strand, within Xcc-8004.731.1 at 682.041 kb on - strand at 682.166 kb on + strand at 682.167 kb on - strand at 682.167 kb on - strand at 682.167 kb on - strand at 682.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 679,686 + Xcc-8004.729.1 0.14 -0.2 679,686 + Xcc-8004.729.1 0.14 -0.7 679,686 + Xcc-8004.729.1 0.14 +0.0 679,687 - Xcc-8004.729.1 0.14 +1.8 679,687 - Xcc-8004.729.1 0.14 +0.1 679,687 - Xcc-8004.729.1 0.14 -0.5 679,821 + Xcc-8004.729.1 0.28 +0.5 680,066 + Xcc-8004.729.1 0.54 -0.2 680,067 - Xcc-8004.729.1 0.54 -0.8 680,520 + +0.1 680,521 - +0.2 680,566 + +0.4 680,567 - +0.2 680,567 - -1.0 680,567 - -1.2 680,567 - +1.5 680,605 + -0.2 680,605 + +0.2 680,606 - +0.8 680,606 - +0.7 680,747 + Xcc-8004.730.1 0.18 +0.2 680,747 + Xcc-8004.730.1 0.18 -1.1 680,747 + Xcc-8004.730.1 0.18 -0.6 680,748 - Xcc-8004.730.1 0.18 -0.9 680,748 - Xcc-8004.730.1 0.18 -1.0 680,933 + Xcc-8004.730.1 0.50 +0.5 680,934 - Xcc-8004.730.1 0.50 -0.2 680,934 - Xcc-8004.730.1 0.50 -3.2 681,029 + Xcc-8004.730.1 0.66 -0.7 681,030 - Xcc-8004.730.1 0.66 +0.1 681,030 - Xcc-8004.730.1 0.66 -1.2 681,130 + Xcc-8004.730.1 0.83 +0.5 681,130 + Xcc-8004.730.1 0.83 -0.6 681,131 - Xcc-8004.730.1 0.83 -0.4 681,334 + +0.6 681,335 - +1.9 681,335 - +0.3 681,335 - -0.8 681,335 - -0.4 681,518 + Xcc-8004.731.1 0.27 +0.7 681,518 + Xcc-8004.731.1 0.27 -0.0 681,519 - Xcc-8004.731.1 0.28 -0.5 681,519 - Xcc-8004.731.1 0.28 -0.7 681,620 + Xcc-8004.731.1 0.41 +0.3 681,620 + Xcc-8004.731.1 0.41 -0.4 681,620 + Xcc-8004.731.1 0.41 -0.2 681,621 - Xcc-8004.731.1 0.42 +1.0 681,621 - Xcc-8004.731.1 0.42 +0.4 682,041 - -0.7 682,166 + -0.1 682,167 - -1.8 682,167 - +0.0 682,167 - -0.9 682,186 - +1.1
Or see this region's nucleotide sequence