Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.569.1

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.565.1 and Xcc-8004.569.1 overlap by 4 nucleotidesXcc-8004.569.1 and Xcc-8004.570.1 are separated by 1 nucleotides Xcc-8004.565.1: Xcc-8004.565.1 - Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168), at 523,475 to 524,983 Xcc-8004.565.1 Xcc-8004.569.1: Xcc-8004.569.1 - FIG01209918: hypothetical protein, at 524,980 to 525,363 Xcc-8004.569.1 Xcc-8004.570.1: Xcc-8004.570.1 - Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4), at 525,365 to 526,435 Xcc-8004.570.1 Position (kb) 524 525 526Strain fitness (log2 ratio) -2 -1 0 1at 524.356 kb on + strand, within Xcc-8004.565.1at 524.378 kb on + strand, within Xcc-8004.565.1at 524.378 kb on + strand, within Xcc-8004.565.1at 524.378 kb on + strand, within Xcc-8004.565.1at 524.378 kb on + strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.495 kb on - strand, within Xcc-8004.565.1at 524.867 kb on + strandat 524.867 kb on + strandat 524.870 kb on + strandat 524.870 kb on + strandat 524.870 kb on + strandat 524.870 kb on + strandat 524.870 kb on + strandat 525.107 kb on + strand, within Xcc-8004.569.1at 525.108 kb on - strand, within Xcc-8004.569.1at 525.108 kb on - strand, within Xcc-8004.569.1at 525.108 kb on - strand, within Xcc-8004.569.1at 525.158 kb on + strand, within Xcc-8004.569.1at 525.158 kb on + strand, within Xcc-8004.569.1at 525.159 kb on - strand, within Xcc-8004.569.1at 525.159 kb on - strand, within Xcc-8004.569.1at 525.327 kb on - strandat 525.327 kb on - strandat 525.451 kb on + strandat 525.451 kb on + strandat 525.451 kb on + strandat 525.451 kb on + strandat 525.451 kb on + strandat 525.462 kb on + strandat 525.462 kb on + strandat 525.462 kb on + strandat 525.463 kb on - strandat 525.498 kb on + strand, within Xcc-8004.570.1at 525.498 kb on + strand, within Xcc-8004.570.1at 525.498 kb on + strand, within Xcc-8004.570.1at 525.498 kb on + strand, within Xcc-8004.570.1at 525.499 kb on - strand, within Xcc-8004.570.1at 525.499 kb on - strand, within Xcc-8004.570.1at 525.499 kb on - strand, within Xcc-8004.570.1at 525.499 kb on - strand, within Xcc-8004.570.1at 525.499 kb on - strand, within Xcc-8004.570.1at 525.499 kb on - strand, within Xcc-8004.570.1at 525.807 kb on + strand, within Xcc-8004.570.1at 525.807 kb on + strand, within Xcc-8004.570.1at 525.807 kb on + strand, within Xcc-8004.570.1at 525.807 kb on + strand, within Xcc-8004.570.1at 525.807 kb on + strand, within Xcc-8004.570.1at 525.808 kb on - strand, within Xcc-8004.570.1at 525.808 kb on - strand, within Xcc-8004.570.1at 525.808 kb on - strand, within Xcc-8004.570.1at 525.808 kb on - strand, within Xcc-8004.570.1at 525.808 kb on - strand, within Xcc-8004.570.1at 525.808 kb on - strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.817 kb on - strand, within Xcc-8004.570.1at 525.817 kb on - strand, within Xcc-8004.570.1at 525.817 kb on - strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.882 kb on + strand, within Xcc-8004.570.1at 525.882 kb on + strand, within Xcc-8004.570.1at 525.882 kb on + strand, within Xcc-8004.570.1at 525.883 kb on - strand, within Xcc-8004.570.1at 525.883 kb on - strand, within Xcc-8004.570.1at 525.883 kb on - strand, within Xcc-8004.570.1at 525.883 kb on - strand, within Xcc-8004.570.1at 526.084 kb on - strand, within Xcc-8004.570.1at 526.084 kb on - strand, within Xcc-8004.570.1at 526.253 kb on + strand, within Xcc-8004.570.1at 526.253 kb on + strand, within Xcc-8004.570.1at 526.253 kb on + strand, within Xcc-8004.570.1at 526.253 kb on + strand, within Xcc-8004.570.1at 526.253 kb on + strand, within Xcc-8004.570.1at 526.253 kb on + strand, within Xcc-8004.570.1at 526.254 kb on - strand, within Xcc-8004.570.1at 526.254 kb on - strand, within Xcc-8004.570.1at 526.254 kb on - strand, within Xcc-8004.570.1at 526.254 kb on - strand, within Xcc-8004.570.1at 526.254 kb on - strand, within Xcc-8004.570.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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524,356 + Xcc-8004.565.1 0.58 +0.3
524,378 + Xcc-8004.565.1 0.60 -1.9
524,378 + Xcc-8004.565.1 0.60 +1.5
524,378 + Xcc-8004.565.1 0.60 +0.5
524,378 + Xcc-8004.565.1 0.60 -0.4
524,379 - Xcc-8004.565.1 0.60 +0.5
524,379 - Xcc-8004.565.1 0.60 +1.2
524,379 - Xcc-8004.565.1 0.60 -1.8
524,379 - Xcc-8004.565.1 0.60 +0.0
524,379 - Xcc-8004.565.1 0.60 +0.2
524,379 - Xcc-8004.565.1 0.60 +1.7
524,379 - Xcc-8004.565.1 0.60 +0.3
524,495 - Xcc-8004.565.1 0.68 +1.3
524,867 + -0.8
524,867 + -1.3
524,870 + -0.0
524,870 + +0.5
524,870 + -0.8
524,870 + +0.5
524,870 + +1.0
525,107 + Xcc-8004.569.1 0.33 -0.3
525,108 - Xcc-8004.569.1 0.33 -1.0
525,108 - Xcc-8004.569.1 0.33 -0.5
525,108 - Xcc-8004.569.1 0.33 -1.0
525,158 + Xcc-8004.569.1 0.46 -0.6
525,158 + Xcc-8004.569.1 0.46 +0.1
525,159 - Xcc-8004.569.1 0.47 -1.6
525,159 - Xcc-8004.569.1 0.47 -0.6
525,327 - +0.1
525,327 - +0.1
525,451 + -1.9
525,451 + -0.5
525,451 + +0.1
525,451 + -0.5
525,451 + +0.4
525,462 + -0.0
525,462 + +0.0
525,462 + -0.0
525,463 - +0.3
525,498 + Xcc-8004.570.1 0.12 +0.9
525,498 + Xcc-8004.570.1 0.12 -0.2
525,498 + Xcc-8004.570.1 0.12 -2.1
525,498 + Xcc-8004.570.1 0.12 +0.5
525,499 - Xcc-8004.570.1 0.13 +1.2
525,499 - Xcc-8004.570.1 0.13 -0.3
525,499 - Xcc-8004.570.1 0.13 +0.3
525,499 - Xcc-8004.570.1 0.13 +1.4
525,499 - Xcc-8004.570.1 0.13 -0.0
525,499 - Xcc-8004.570.1 0.13 +0.3
525,807 + Xcc-8004.570.1 0.41 +0.3
525,807 + Xcc-8004.570.1 0.41 -1.4
525,807 + Xcc-8004.570.1 0.41 -0.2
525,807 + Xcc-8004.570.1 0.41 -0.6
525,807 + Xcc-8004.570.1 0.41 -0.2
525,808 - Xcc-8004.570.1 0.41 -0.5
525,808 - Xcc-8004.570.1 0.41 +1.3
525,808 - Xcc-8004.570.1 0.41 +1.4
525,808 - Xcc-8004.570.1 0.41 +0.6
525,808 - Xcc-8004.570.1 0.41 -0.5
525,808 - Xcc-8004.570.1 0.41 +0.6
525,816 + Xcc-8004.570.1 0.42 -0.7
525,816 + Xcc-8004.570.1 0.42 -1.8
525,816 + Xcc-8004.570.1 0.42 +0.3
525,816 + Xcc-8004.570.1 0.42 -0.1
525,816 + Xcc-8004.570.1 0.42 -1.9
525,816 + Xcc-8004.570.1 0.42 +0.2
525,816 + Xcc-8004.570.1 0.42 +0.9
525,816 + Xcc-8004.570.1 0.42 +1.1
525,816 + Xcc-8004.570.1 0.42 -0.2
525,816 + Xcc-8004.570.1 0.42 +0.5
525,817 - Xcc-8004.570.1 0.42 +0.6
525,817 - Xcc-8004.570.1 0.42 -0.7
525,817 - Xcc-8004.570.1 0.42 +0.7
525,837 + Xcc-8004.570.1 0.44 -1.6
525,837 + Xcc-8004.570.1 0.44 +1.3
525,837 + Xcc-8004.570.1 0.44 -0.7
525,837 + Xcc-8004.570.1 0.44 -1.7
525,837 + Xcc-8004.570.1 0.44 -0.6
525,837 + Xcc-8004.570.1 0.44 +0.6
525,837 + Xcc-8004.570.1 0.44 +0.2
525,837 + Xcc-8004.570.1 0.44 -0.8
525,837 + Xcc-8004.570.1 0.44 +1.1
525,837 + Xcc-8004.570.1 0.44 -0.4
525,838 - Xcc-8004.570.1 0.44 -0.3
525,838 - Xcc-8004.570.1 0.44 -2.0
525,838 - Xcc-8004.570.1 0.44 -1.8
525,838 - Xcc-8004.570.1 0.44 -1.0
525,838 - Xcc-8004.570.1 0.44 +0.3
525,838 - Xcc-8004.570.1 0.44 +0.5
525,838 - Xcc-8004.570.1 0.44 +0.5
525,838 - Xcc-8004.570.1 0.44 +0.2
525,838 - Xcc-8004.570.1 0.44 +1.0
525,838 - Xcc-8004.570.1 0.44 +0.7
525,838 - Xcc-8004.570.1 0.44 -0.5
525,838 - Xcc-8004.570.1 0.44 -0.0
525,838 - Xcc-8004.570.1 0.44 +0.6
525,838 - Xcc-8004.570.1 0.44 +0.1
525,882 + Xcc-8004.570.1 0.48 -0.0
525,882 + Xcc-8004.570.1 0.48 +0.7
525,882 + Xcc-8004.570.1 0.48 -0.4
525,883 - Xcc-8004.570.1 0.48 +0.7
525,883 - Xcc-8004.570.1 0.48 -0.3
525,883 - Xcc-8004.570.1 0.48 -2.4
525,883 - Xcc-8004.570.1 0.48 -0.5
526,084 - Xcc-8004.570.1 0.67 +0.8
526,084 - Xcc-8004.570.1 0.67 -1.0
526,253 + Xcc-8004.570.1 0.83 -0.5
526,253 + Xcc-8004.570.1 0.83 -0.9
526,253 + Xcc-8004.570.1 0.83 -0.0
526,253 + Xcc-8004.570.1 0.83 +0.8
526,253 + Xcc-8004.570.1 0.83 +0.0
526,253 + Xcc-8004.570.1 0.83 -0.4
526,254 - Xcc-8004.570.1 0.83 +0.9
526,254 - Xcc-8004.570.1 0.83 +0.6
526,254 - Xcc-8004.570.1 0.83 +0.3
526,254 - Xcc-8004.570.1 0.83 -0.8
526,254 - Xcc-8004.570.1 0.83 +0.1

Or see this region's nucleotide sequence