Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5169.1

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5168.1 and Xcc-8004.5169.1 are separated by 279 nucleotidesXcc-8004.5169.1 and Xcc-8004.5170.1 overlap by 4 nucleotides Xcc-8004.5168.1: Xcc-8004.5168.1 - hypothetical protein, at 4,904,531 to 4,904,674 Xcc-8004.5168.1 Xcc-8004.5169.1: Xcc-8004.5169.1 - L-fucose mutarotase, type 2, at 4,904,954 to 4,905,331 Xcc-8004.5169.1 Xcc-8004.5170.1: Xcc-8004.5170.1 - Fucose permease, at 4,905,328 to 4,906,626 Xcc-8004.5170.1 Position (kb) 4904 4905 4906Strain fitness (log2 ratio) -2 -1 0 1 2at 4904.072 kb on - strandat 4904.072 kb on - strandat 4904.082 kb on + strandat 4904.083 kb on - strandat 4904.094 kb on + strandat 4904.394 kb on - strandat 4904.580 kb on - strand, within Xcc-8004.5168.1at 4904.671 kb on - strandat 4904.671 kb on - strandat 4904.671 kb on - strandat 4904.671 kb on - strandat 4904.671 kb on - strandat 4904.877 kb on - strandat 4904.936 kb on + strandat 4904.955 kb on + strandat 4904.956 kb on - strandat 4905.135 kb on + strand, within Xcc-8004.5169.1at 4905.135 kb on + strand, within Xcc-8004.5169.1at 4905.136 kb on - strand, within Xcc-8004.5169.1at 4905.136 kb on - strand, within Xcc-8004.5169.1at 4905.136 kb on - strand, within Xcc-8004.5169.1at 4905.136 kb on - strand, within Xcc-8004.5169.1at 4905.267 kb on + strand, within Xcc-8004.5169.1at 4905.267 kb on + strand, within Xcc-8004.5169.1at 4905.267 kb on + strand, within Xcc-8004.5169.1at 4905.268 kb on - strand, within Xcc-8004.5169.1at 4905.268 kb on - strand, within Xcc-8004.5169.1at 4905.309 kb on + strandat 4905.310 kb on - strandat 4905.310 kb on - strandat 4905.310 kb on - strandat 4905.602 kb on + strand, within Xcc-8004.5170.1at 4905.603 kb on - strand, within Xcc-8004.5170.1at 4905.603 kb on - strand, within Xcc-8004.5170.1at 4905.695 kb on + strand, within Xcc-8004.5170.1at 4905.695 kb on + strand, within Xcc-8004.5170.1at 4905.736 kb on + strand, within Xcc-8004.5170.1at 4905.737 kb on - strand, within Xcc-8004.5170.1at 4905.737 kb on - strand, within Xcc-8004.5170.1at 4905.737 kb on - strand, within Xcc-8004.5170.1at 4905.758 kb on + strand, within Xcc-8004.5170.1at 4905.758 kb on + strand, within Xcc-8004.5170.1at 4905.758 kb on + strand, within Xcc-8004.5170.1at 4905.758 kb on + strand, within Xcc-8004.5170.1at 4905.758 kb on + strand, within Xcc-8004.5170.1at 4905.758 kb on + strand, within Xcc-8004.5170.1at 4905.759 kb on - strand, within Xcc-8004.5170.1at 4905.759 kb on - strand, within Xcc-8004.5170.1at 4905.818 kb on + strand, within Xcc-8004.5170.1at 4905.818 kb on + strand, within Xcc-8004.5170.1at 4905.818 kb on + strand, within Xcc-8004.5170.1at 4905.819 kb on - strand, within Xcc-8004.5170.1at 4905.848 kb on + strand, within Xcc-8004.5170.1at 4905.849 kb on - strand, within Xcc-8004.5170.1at 4905.849 kb on - strand, within Xcc-8004.5170.1at 4906.013 kb on + strand, within Xcc-8004.5170.1at 4906.013 kb on + strand, within Xcc-8004.5170.1at 4906.013 kb on + strand, within Xcc-8004.5170.1at 4906.295 kb on + strand, within Xcc-8004.5170.1at 4906.295 kb on + strand, within Xcc-8004.5170.1at 4906.296 kb on - strand, within Xcc-8004.5170.1at 4906.296 kb on - strand, within Xcc-8004.5170.1at 4906.296 kb on - strand, within Xcc-8004.5170.1at 4906.296 kb on - strand, within Xcc-8004.5170.1at 4906.296 kb on - strand, within Xcc-8004.5170.1at 4906.296 kb on - strand, within Xcc-8004.5170.1at 4906.319 kb on + strand, within Xcc-8004.5170.1at 4906.320 kb on - strand, within Xcc-8004.5170.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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4,904,072 - -0.5
4,904,072 - -0.9
4,904,082 + -0.6
4,904,083 - +0.5
4,904,094 + +0.4
4,904,394 - +0.4
4,904,580 - Xcc-8004.5168.1 0.34 -0.4
4,904,671 - -0.5
4,904,671 - +0.2
4,904,671 - +0.2
4,904,671 - +0.5
4,904,671 - +0.2
4,904,877 - +1.3
4,904,936 + +0.1
4,904,955 + +0.5
4,904,956 - +0.1
4,905,135 + Xcc-8004.5169.1 0.48 -0.4
4,905,135 + Xcc-8004.5169.1 0.48 -0.9
4,905,136 - Xcc-8004.5169.1 0.48 -0.7
4,905,136 - Xcc-8004.5169.1 0.48 -1.9
4,905,136 - Xcc-8004.5169.1 0.48 -0.3
4,905,136 - Xcc-8004.5169.1 0.48 -1.2
4,905,267 + Xcc-8004.5169.1 0.83 -0.2
4,905,267 + Xcc-8004.5169.1 0.83 -1.2
4,905,267 + Xcc-8004.5169.1 0.83 -1.4
4,905,268 - Xcc-8004.5169.1 0.83 -0.8
4,905,268 - Xcc-8004.5169.1 0.83 -0.5
4,905,309 + -0.2
4,905,310 - -1.3
4,905,310 - -0.6
4,905,310 - +0.2
4,905,602 + Xcc-8004.5170.1 0.21 -0.0
4,905,603 - Xcc-8004.5170.1 0.21 -1.2
4,905,603 - Xcc-8004.5170.1 0.21 -1.8
4,905,695 + Xcc-8004.5170.1 0.28 +0.8
4,905,695 + Xcc-8004.5170.1 0.28 +0.3
4,905,736 + Xcc-8004.5170.1 0.31 +0.0
4,905,737 - Xcc-8004.5170.1 0.31 +0.8
4,905,737 - Xcc-8004.5170.1 0.31 -0.5
4,905,737 - Xcc-8004.5170.1 0.31 +0.9
4,905,758 + Xcc-8004.5170.1 0.33 -2.1
4,905,758 + Xcc-8004.5170.1 0.33 +1.8
4,905,758 + Xcc-8004.5170.1 0.33 +0.3
4,905,758 + Xcc-8004.5170.1 0.33 -0.1
4,905,758 + Xcc-8004.5170.1 0.33 -0.9
4,905,758 + Xcc-8004.5170.1 0.33 -0.7
4,905,759 - Xcc-8004.5170.1 0.33 -0.9
4,905,759 - Xcc-8004.5170.1 0.33 +0.3
4,905,818 + Xcc-8004.5170.1 0.38 -0.4
4,905,818 + Xcc-8004.5170.1 0.38 +0.1
4,905,818 + Xcc-8004.5170.1 0.38 -0.5
4,905,819 - Xcc-8004.5170.1 0.38 -0.6
4,905,848 + Xcc-8004.5170.1 0.40 +0.8
4,905,849 - Xcc-8004.5170.1 0.40 +0.4
4,905,849 - Xcc-8004.5170.1 0.40 -0.1
4,906,013 + Xcc-8004.5170.1 0.53 -0.2
4,906,013 + Xcc-8004.5170.1 0.53 +0.2
4,906,013 + Xcc-8004.5170.1 0.53 +0.0
4,906,295 + Xcc-8004.5170.1 0.74 -0.5
4,906,295 + Xcc-8004.5170.1 0.74 +0.1
4,906,296 - Xcc-8004.5170.1 0.75 -0.0
4,906,296 - Xcc-8004.5170.1 0.75 -1.5
4,906,296 - Xcc-8004.5170.1 0.75 -0.2
4,906,296 - Xcc-8004.5170.1 0.75 -0.7
4,906,296 - Xcc-8004.5170.1 0.75 +0.5
4,906,296 - Xcc-8004.5170.1 0.75 -0.4
4,906,319 + Xcc-8004.5170.1 0.76 +0.0
4,906,320 - Xcc-8004.5170.1 0.76 -0.7

Or see this region's nucleotide sequence