Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4697.1

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4695.1 and Xcc-8004.4697.1 are separated by 534 nucleotidesXcc-8004.4697.1 and Xcc-8004.4698.1 overlap by 23 nucleotides Xcc-8004.4695.1: Xcc-8004.4695.1 - Periplasmic aromatic aldehyde oxidoreductase, molybdenum binding subunit YagR, at 4,469,786 to 4,471,999 Xcc-8004.4695.1 Xcc-8004.4697.1: Xcc-8004.4697.1 - FIG01210654: hypothetical protein, at 4,472,534 to 4,473,268 Xcc-8004.4697.1 Xcc-8004.4698.1: Xcc-8004.4698.1 - Methyl-accepting chemotaxis protein, at 4,473,246 to 4,475,936 Xcc-8004.4698.1 Position (kb) 4472 4473 4474Strain fitness (log2 ratio) -2 -1 0 1 2at 4471.578 kb on + strand, within Xcc-8004.4695.1at 4471.578 kb on + strand, within Xcc-8004.4695.1at 4471.579 kb on - strand, within Xcc-8004.4695.1at 4471.579 kb on - strand, within Xcc-8004.4695.1at 4471.677 kb on + strand, within Xcc-8004.4695.1at 4471.677 kb on + strand, within Xcc-8004.4695.1at 4471.678 kb on - strand, within Xcc-8004.4695.1at 4471.678 kb on - strand, within Xcc-8004.4695.1at 4471.678 kb on - strand, within Xcc-8004.4695.1at 4471.716 kb on + strand, within Xcc-8004.4695.1at 4471.716 kb on + strand, within Xcc-8004.4695.1at 4471.716 kb on + strand, within Xcc-8004.4695.1at 4471.716 kb on + strand, within Xcc-8004.4695.1at 4471.716 kb on + strand, within Xcc-8004.4695.1at 4471.716 kb on + strand, within Xcc-8004.4695.1at 4471.716 kb on + strand, within Xcc-8004.4695.1at 4471.716 kb on + strand, within Xcc-8004.4695.1at 4471.716 kb on + strand, within Xcc-8004.4695.1at 4471.716 kb on + strand, within Xcc-8004.4695.1at 4471.716 kb on + strand, within Xcc-8004.4695.1at 4471.716 kb on + strand, within Xcc-8004.4695.1at 4471.717 kb on - strand, within Xcc-8004.4695.1at 4471.717 kb on - strand, within Xcc-8004.4695.1at 4471.717 kb on - strand, within Xcc-8004.4695.1at 4471.717 kb on - strand, within Xcc-8004.4695.1at 4471.717 kb on - strand, within Xcc-8004.4695.1at 4471.717 kb on - strand, within Xcc-8004.4695.1at 4471.717 kb on - strand, within Xcc-8004.4695.1at 4471.717 kb on - strand, within Xcc-8004.4695.1at 4471.717 kb on - strand, within Xcc-8004.4695.1at 4471.717 kb on - strand, within Xcc-8004.4695.1at 4471.717 kb on - strand, within Xcc-8004.4695.1at 4471.717 kb on - strand, within Xcc-8004.4695.1at 4471.717 kb on - strand, within Xcc-8004.4695.1at 4471.717 kb on - strand, within Xcc-8004.4695.1at 4471.845 kb on + strandat 4471.846 kb on - strandat 4471.846 kb on - strandat 4471.846 kb on - strandat 4471.884 kb on + strandat 4471.884 kb on + strandat 4471.884 kb on + strandat 4471.884 kb on + strandat 4471.885 kb on - strandat 4471.885 kb on - strandat 4471.885 kb on - strandat 4471.890 kb on + strandat 4471.891 kb on - strandat 4472.138 kb on + strandat 4472.507 kb on + strandat 4472.879 kb on + strand, within Xcc-8004.4697.1at 4472.879 kb on + strand, within Xcc-8004.4697.1at 4472.900 kb on + strand, within Xcc-8004.4697.1at 4472.901 kb on - strand, within Xcc-8004.4697.1at 4472.901 kb on - strand, within Xcc-8004.4697.1at 4472.901 kb on - strand, within Xcc-8004.4697.1at 4473.266 kb on + strandat 4473.405 kb on + strandat 4473.405 kb on + strandat 4473.405 kb on + strandat 4473.429 kb on + strandat 4473.604 kb on + strand, within Xcc-8004.4698.1at 4473.882 kb on + strand, within Xcc-8004.4698.1at 4473.883 kb on - strand, within Xcc-8004.4698.1at 4473.883 kb on - strand, within Xcc-8004.4698.1at 4474.063 kb on - strand, within Xcc-8004.4698.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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4,471,578 + Xcc-8004.4695.1 0.81 -1.1
4,471,578 + Xcc-8004.4695.1 0.81 -0.0
4,471,579 - Xcc-8004.4695.1 0.81 +0.7
4,471,579 - Xcc-8004.4695.1 0.81 -0.5
4,471,677 + Xcc-8004.4695.1 0.85 -0.0
4,471,677 + Xcc-8004.4695.1 0.85 +0.4
4,471,678 - Xcc-8004.4695.1 0.85 -1.0
4,471,678 - Xcc-8004.4695.1 0.85 -0.2
4,471,678 - Xcc-8004.4695.1 0.85 +0.5
4,471,716 + Xcc-8004.4695.1 0.87 -0.2
4,471,716 + Xcc-8004.4695.1 0.87 -1.6
4,471,716 + Xcc-8004.4695.1 0.87 -1.2
4,471,716 + Xcc-8004.4695.1 0.87 +0.8
4,471,716 + Xcc-8004.4695.1 0.87 +0.7
4,471,716 + Xcc-8004.4695.1 0.87 -0.6
4,471,716 + Xcc-8004.4695.1 0.87 -1.8
4,471,716 + Xcc-8004.4695.1 0.87 +0.6
4,471,716 + Xcc-8004.4695.1 0.87 -0.7
4,471,716 + Xcc-8004.4695.1 0.87 +0.4
4,471,716 + Xcc-8004.4695.1 0.87 +1.8
4,471,716 + Xcc-8004.4695.1 0.87 -0.1
4,471,717 - Xcc-8004.4695.1 0.87 -0.8
4,471,717 - Xcc-8004.4695.1 0.87 -0.6
4,471,717 - Xcc-8004.4695.1 0.87 -0.7
4,471,717 - Xcc-8004.4695.1 0.87 -2.1
4,471,717 - Xcc-8004.4695.1 0.87 +0.6
4,471,717 - Xcc-8004.4695.1 0.87 +0.2
4,471,717 - Xcc-8004.4695.1 0.87 -0.0
4,471,717 - Xcc-8004.4695.1 0.87 +0.6
4,471,717 - Xcc-8004.4695.1 0.87 +0.1
4,471,717 - Xcc-8004.4695.1 0.87 -0.0
4,471,717 - Xcc-8004.4695.1 0.87 +2.2
4,471,717 - Xcc-8004.4695.1 0.87 -0.4
4,471,717 - Xcc-8004.4695.1 0.87 +0.0
4,471,717 - Xcc-8004.4695.1 0.87 -0.3
4,471,845 + -0.5
4,471,846 - -0.5
4,471,846 - +0.9
4,471,846 - -0.5
4,471,884 + +0.6
4,471,884 + +0.0
4,471,884 + -1.7
4,471,884 + +0.5
4,471,885 - +0.2
4,471,885 - -1.0
4,471,885 - -0.1
4,471,890 + +0.6
4,471,891 - -0.3
4,472,138 + +0.6
4,472,507 + +0.5
4,472,879 + Xcc-8004.4697.1 0.47 -0.5
4,472,879 + Xcc-8004.4697.1 0.47 -0.4
4,472,900 + Xcc-8004.4697.1 0.50 +1.2
4,472,901 - Xcc-8004.4697.1 0.50 -1.2
4,472,901 - Xcc-8004.4697.1 0.50 -1.1
4,472,901 - Xcc-8004.4697.1 0.50 -1.3
4,473,266 + -0.9
4,473,405 + -0.8
4,473,405 + -0.7
4,473,405 + +0.3
4,473,429 + +0.5
4,473,604 + Xcc-8004.4698.1 0.13 +0.5
4,473,882 + Xcc-8004.4698.1 0.24 -0.7
4,473,883 - Xcc-8004.4698.1 0.24 -1.2
4,473,883 - Xcc-8004.4698.1 0.24 +0.2
4,474,063 - Xcc-8004.4698.1 0.30 +1.9

Or see this region's nucleotide sequence