Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4604.1 and Xcc-8004.4605.1 are separated by 257 nucleotides Xcc-8004.4605.1 and Xcc-8004.4606.1 are separated by 55 nucleotides Xcc-8004.4606.1 and Xcc-8004.4607.1 are separated by 127 nucleotides
Xcc-8004.4604.1: Xcc-8004.4604.1 - hypothetical protein, at 4,388,540 to 4,389,448
Xcc-8004.4604.1
Xcc-8004.4605.1: Xcc-8004.4605.1 - FIG001943: hypothetical protein YajQ, at 4,389,706 to 4,390,191
Xcc-8004.4605.1
Xcc-8004.4606.1: Xcc-8004.4606.1 - FIG01210755: hypothetical protein, at 4,390,247 to 4,390,921
Xcc-8004.4606.1
Xcc-8004.4607.1: Xcc-8004.4607.1 - Histidinol phosphatase and related hydrolases of the PHP family, at 4,391,049 to 4,392,482
Xcc-8004.4607.1
Position (kb) 4390
4391 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4389.334 kb on - strand, within Xcc-8004.4604.1 at 4389.578 kb on + strand at 4389.578 kb on + strand at 4389.578 kb on + strand at 4389.578 kb on + strand at 4389.579 kb on - strand at 4389.579 kb on - strand at 4389.579 kb on - strand at 4389.579 kb on - strand at 4389.579 kb on - strand at 4389.579 kb on - strand at 4389.579 kb on - strand at 4389.579 kb on - strand at 4389.671 kb on + strand at 4389.672 kb on - strand at 4390.136 kb on + strand, within Xcc-8004.4605.1 at 4390.136 kb on + strand, within Xcc-8004.4605.1 at 4390.137 kb on - strand, within Xcc-8004.4605.1 at 4390.327 kb on + strand, within Xcc-8004.4606.1 at 4390.327 kb on + strand, within Xcc-8004.4606.1 at 4390.327 kb on + strand, within Xcc-8004.4606.1 at 4390.327 kb on + strand, within Xcc-8004.4606.1 at 4390.328 kb on - strand, within Xcc-8004.4606.1 at 4390.328 kb on - strand, within Xcc-8004.4606.1 at 4390.328 kb on - strand, within Xcc-8004.4606.1 at 4390.328 kb on - strand, within Xcc-8004.4606.1 at 4390.328 kb on - strand, within Xcc-8004.4606.1 at 4390.328 kb on - strand, within Xcc-8004.4606.1 at 4390.463 kb on + strand, within Xcc-8004.4606.1 at 4390.464 kb on - strand, within Xcc-8004.4606.1 at 4390.625 kb on + strand, within Xcc-8004.4606.1 at 4390.625 kb on + strand, within Xcc-8004.4606.1 at 4390.626 kb on - strand, within Xcc-8004.4606.1 at 4390.626 kb on - strand, within Xcc-8004.4606.1 at 4390.626 kb on - strand, within Xcc-8004.4606.1 at 4390.626 kb on - strand, within Xcc-8004.4606.1 at 4390.712 kb on + strand, within Xcc-8004.4606.1 at 4390.935 kb on - strand at 4390.935 kb on - strand at 4390.935 kb on - strand at 4391.083 kb on + strand at 4391.083 kb on + strand at 4391.083 kb on + strand at 4391.083 kb on + strand at 4391.084 kb on - strand at 4391.084 kb on - strand at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.575 kb on + strand, within Xcc-8004.4607.1 at 4391.575 kb on + strand, within Xcc-8004.4607.1 at 4391.576 kb on - strand, within Xcc-8004.4607.1
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 4,389,334 - Xcc-8004.4604.1 0.87 +1.6 4,389,578 + +0.3 4,389,578 + +0.5 4,389,578 + -1.0 4,389,578 + +0.7 4,389,579 - +0.7 4,389,579 - +2.1 4,389,579 - +0.2 4,389,579 - +0.9 4,389,579 - -0.7 4,389,579 - -1.1 4,389,579 - -1.7 4,389,579 - -0.5 4,389,671 + -0.2 4,389,672 - +0.8 4,390,136 + Xcc-8004.4605.1 0.88 +0.9 4,390,136 + Xcc-8004.4605.1 0.88 +0.8 4,390,137 - Xcc-8004.4605.1 0.89 -0.3 4,390,327 + Xcc-8004.4606.1 0.12 -1.2 4,390,327 + Xcc-8004.4606.1 0.12 +0.4 4,390,327 + Xcc-8004.4606.1 0.12 -0.2 4,390,327 + Xcc-8004.4606.1 0.12 -0.4 4,390,328 - Xcc-8004.4606.1 0.12 +0.5 4,390,328 - Xcc-8004.4606.1 0.12 +0.3 4,390,328 - Xcc-8004.4606.1 0.12 -0.3 4,390,328 - Xcc-8004.4606.1 0.12 -0.3 4,390,328 - Xcc-8004.4606.1 0.12 -1.1 4,390,328 - Xcc-8004.4606.1 0.12 -0.4 4,390,463 + Xcc-8004.4606.1 0.32 -0.7 4,390,464 - Xcc-8004.4606.1 0.32 +0.1 4,390,625 + Xcc-8004.4606.1 0.56 +0.4 4,390,625 + Xcc-8004.4606.1 0.56 -0.7 4,390,626 - Xcc-8004.4606.1 0.56 -2.6 4,390,626 - Xcc-8004.4606.1 0.56 +0.0 4,390,626 - Xcc-8004.4606.1 0.56 -0.3 4,390,626 - Xcc-8004.4606.1 0.56 -0.6 4,390,712 + Xcc-8004.4606.1 0.69 -0.0 4,390,935 - -1.0 4,390,935 - -0.3 4,390,935 - -0.2 4,391,083 + +0.6 4,391,083 + -0.6 4,391,083 + -0.2 4,391,083 + -0.5 4,391,084 - -1.1 4,391,084 - +0.4 4,391,563 + Xcc-8004.4607.1 0.36 +0.6 4,391,563 + Xcc-8004.4607.1 0.36 -0.6 4,391,563 + Xcc-8004.4607.1 0.36 +0.2 4,391,563 + Xcc-8004.4607.1 0.36 -0.3 4,391,563 + Xcc-8004.4607.1 0.36 -1.8 4,391,563 + Xcc-8004.4607.1 0.36 -3.1 4,391,563 + Xcc-8004.4607.1 0.36 +0.7 4,391,563 + Xcc-8004.4607.1 0.36 -0.7 4,391,563 + Xcc-8004.4607.1 0.36 +0.5 4,391,563 + Xcc-8004.4607.1 0.36 -1.0 4,391,563 + Xcc-8004.4607.1 0.36 +0.0 4,391,563 + Xcc-8004.4607.1 0.36 -0.6 4,391,563 + Xcc-8004.4607.1 0.36 -0.1 4,391,564 - Xcc-8004.4607.1 0.36 -0.6 4,391,564 - Xcc-8004.4607.1 0.36 +0.2 4,391,564 - Xcc-8004.4607.1 0.36 +0.8 4,391,564 - Xcc-8004.4607.1 0.36 -0.4 4,391,564 - Xcc-8004.4607.1 0.36 -0.7 4,391,564 - Xcc-8004.4607.1 0.36 -1.1 4,391,564 - Xcc-8004.4607.1 0.36 +0.7 4,391,564 - Xcc-8004.4607.1 0.36 -0.6 4,391,564 - Xcc-8004.4607.1 0.36 -0.4 4,391,564 - Xcc-8004.4607.1 0.36 -0.6 4,391,564 - Xcc-8004.4607.1 0.36 -1.1 4,391,564 - Xcc-8004.4607.1 0.36 -0.6 4,391,564 - Xcc-8004.4607.1 0.36 -0.2 4,391,575 + Xcc-8004.4607.1 0.37 +0.0 4,391,575 + Xcc-8004.4607.1 0.37 -0.1 4,391,576 - Xcc-8004.4607.1 0.37 -1.3
Or see this region's nucleotide sequence