Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4584.1 and Xcc-8004.4585.1 overlap by 11 nucleotides Xcc-8004.4585.1 and Xcc-8004.4586.1 are separated by 16 nucleotides Xcc-8004.4586.1 and Xcc-8004.4587.1 overlap by 4 nucleotides
Xcc-8004.4584.1: Xcc-8004.4584.1 - Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4), at 4,375,383 to 4,376,636
Xcc-8004.4584.1
Xcc-8004.4585.1: Xcc-8004.4585.1 - Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4), at 4,376,626 to 4,377,231
Xcc-8004.4585.1
Xcc-8004.4586.1: Xcc-8004.4586.1 - FIG01212524: hypothetical protein, at 4,377,248 to 4,377,895
Xcc-8004.4586.1
Xcc-8004.4587.1: Xcc-8004.4587.1 - Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12), at 4,377,892 to 4,379,649
Xcc-8004.4587.1
Position (kb) 4377
4378 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4377.250 kb on - strand at 4377.415 kb on - strand, within Xcc-8004.4586.1 at 4377.415 kb on - strand, within Xcc-8004.4586.1 at 4377.415 kb on - strand, within Xcc-8004.4586.1 at 4377.415 kb on - strand, within Xcc-8004.4586.1 at 4377.415 kb on - strand, within Xcc-8004.4586.1 at 4377.622 kb on - strand, within Xcc-8004.4586.1 at 4377.622 kb on - strand, within Xcc-8004.4586.1 at 4377.622 kb on - strand, within Xcc-8004.4586.1 at 4377.781 kb on - strand, within Xcc-8004.4586.1 at 4377.781 kb on - strand, within Xcc-8004.4586.1 at 4377.781 kb on - strand, within Xcc-8004.4586.1 at 4377.781 kb on - strand, within Xcc-8004.4586.1 at 4377.936 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 4,377,250 - +0.7 4,377,415 - Xcc-8004.4586.1 0.26 -0.9 4,377,415 - Xcc-8004.4586.1 0.26 +2.3 4,377,415 - Xcc-8004.4586.1 0.26 -0.7 4,377,415 - Xcc-8004.4586.1 0.26 -0.8 4,377,415 - Xcc-8004.4586.1 0.26 -0.1 4,377,622 - Xcc-8004.4586.1 0.58 +0.4 4,377,622 - Xcc-8004.4586.1 0.58 -0.5 4,377,622 - Xcc-8004.4586.1 0.58 -2.2 4,377,781 - Xcc-8004.4586.1 0.82 -0.7 4,377,781 - Xcc-8004.4586.1 0.82 -0.4 4,377,781 - Xcc-8004.4586.1 0.82 -0.4 4,377,781 - Xcc-8004.4586.1 0.82 -0.4 4,377,936 - +0.8
Or see this region's nucleotide sequence