Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.396.1 and Xcc-8004.397.1 are separated by 96 nucleotides Xcc-8004.397.1 and Xcc-8004.398.1 are separated by 615 nucleotides
Xcc-8004.396.1: Xcc-8004.396.1 - hypothetical protein, at 381,373 to 382,290
Xcc-8004.396.1
Xcc-8004.397.1: Xcc-8004.397.1 - Short-chain dehydrogenase/reductase SDR, at 382,387 to 383,145
Xcc-8004.397.1
Xcc-8004.398.1: Xcc-8004.398.1 - Conditioned medium factor, at 383,761 to 385,722
Xcc-8004.398.1
Position (kb) 382
383
384 Strain fitness (log2 ratio) -2
-1
0
1
2 at 381.413 kb on + strand at 381.414 kb on - strand at 381.563 kb on + strand, within Xcc-8004.396.1 at 381.563 kb on + strand, within Xcc-8004.396.1 at 381.564 kb on - strand, within Xcc-8004.396.1 at 381.564 kb on - strand, within Xcc-8004.396.1 at 381.564 kb on - strand, within Xcc-8004.396.1 at 381.763 kb on + strand, within Xcc-8004.396.1 at 381.764 kb on - strand, within Xcc-8004.396.1 at 381.764 kb on - strand, within Xcc-8004.396.1 at 382.172 kb on + strand, within Xcc-8004.396.1 at 382.291 kb on - strand at 382.327 kb on - strand at 382.351 kb on + strand at 382.352 kb on - strand at 382.356 kb on + strand at 382.356 kb on + strand at 382.356 kb on + strand at 382.357 kb on - strand at 382.357 kb on - strand at 382.357 kb on - strand at 382.357 kb on - strand at 382.444 kb on + strand at 382.445 kb on - strand at 382.445 kb on - strand at 382.445 kb on - strand at 382.608 kb on + strand, within Xcc-8004.397.1 at 382.705 kb on - strand, within Xcc-8004.397.1 at 382.705 kb on - strand, within Xcc-8004.397.1 at 382.804 kb on + strand, within Xcc-8004.397.1 at 382.966 kb on + strand, within Xcc-8004.397.1 at 382.966 kb on + strand, within Xcc-8004.397.1 at 382.966 kb on + strand, within Xcc-8004.397.1 at 382.966 kb on + strand, within Xcc-8004.397.1 at 382.967 kb on - strand, within Xcc-8004.397.1 at 382.967 kb on - strand, within Xcc-8004.397.1 at 382.967 kb on - strand, within Xcc-8004.397.1 at 382.977 kb on + strand, within Xcc-8004.397.1 at 382.978 kb on - strand, within Xcc-8004.397.1 at 383.144 kb on - strand at 383.146 kb on + strand at 383.157 kb on + strand at 383.157 kb on + strand at 383.191 kb on - strand at 383.202 kb on + strand at 383.202 kb on + strand at 383.203 kb on - strand at 383.315 kb on + strand at 383.342 kb on + strand at 383.371 kb on + strand at 383.411 kb on + strand at 383.411 kb on + strand at 383.411 kb on + strand at 383.412 kb on - strand at 383.498 kb on + strand at 383.508 kb on + strand at 383.646 kb on - strand at 383.646 kb on - strand at 383.689 kb on + strand at 383.689 kb on + strand at 383.751 kb on + strand at 383.869 kb on + strand at 383.954 kb on + strand at 383.996 kb on + strand, within Xcc-8004.398.1 at 383.997 kb on - strand, within Xcc-8004.398.1 at 383.999 kb on + strand, within Xcc-8004.398.1 at 384.060 kb on - strand, within Xcc-8004.398.1
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 381,413 + -0.0 381,414 - -0.9 381,563 + Xcc-8004.396.1 0.21 -0.1 381,563 + Xcc-8004.396.1 0.21 -0.1 381,564 - Xcc-8004.396.1 0.21 +0.6 381,564 - Xcc-8004.396.1 0.21 +0.0 381,564 - Xcc-8004.396.1 0.21 -0.4 381,763 + Xcc-8004.396.1 0.42 -0.3 381,764 - Xcc-8004.396.1 0.43 +0.4 381,764 - Xcc-8004.396.1 0.43 -1.6 382,172 + Xcc-8004.396.1 0.87 -0.2 382,291 - +0.0 382,327 - -0.9 382,351 + -0.4 382,352 - -1.1 382,356 + +0.2 382,356 + -0.4 382,356 + +0.8 382,357 - +0.9 382,357 - -0.2 382,357 - -0.3 382,357 - -1.3 382,444 + +0.2 382,445 - +0.5 382,445 - -0.4 382,445 - -0.0 382,608 + Xcc-8004.397.1 0.29 -0.9 382,705 - Xcc-8004.397.1 0.42 -1.4 382,705 - Xcc-8004.397.1 0.42 -0.8 382,804 + Xcc-8004.397.1 0.55 +0.7 382,966 + Xcc-8004.397.1 0.76 -1.3 382,966 + Xcc-8004.397.1 0.76 -1.6 382,966 + Xcc-8004.397.1 0.76 -0.5 382,966 + Xcc-8004.397.1 0.76 -0.2 382,967 - Xcc-8004.397.1 0.76 -0.9 382,967 - Xcc-8004.397.1 0.76 -0.6 382,967 - Xcc-8004.397.1 0.76 -0.0 382,977 + Xcc-8004.397.1 0.78 -2.6 382,978 - Xcc-8004.397.1 0.78 -0.0 383,144 - +0.1 383,146 + +0.0 383,157 + -0.4 383,157 + +0.4 383,191 - -1.5 383,202 + +0.7 383,202 + -0.7 383,203 - +0.3 383,315 + +0.6 383,342 + -0.4 383,371 + +0.5 383,411 + +1.1 383,411 + +0.2 383,411 + +1.4 383,412 - +2.7 383,498 + -1.6 383,508 + -0.2 383,646 - +0.7 383,646 - -0.6 383,689 + +0.2 383,689 + -0.0 383,751 + -0.3 383,869 + +0.0 383,954 + +0.1 383,996 + Xcc-8004.398.1 0.12 +0.2 383,997 - Xcc-8004.398.1 0.12 +1.0 383,999 + Xcc-8004.398.1 0.12 +0.7 384,060 - Xcc-8004.398.1 0.15 -0.7
Or see this region's nucleotide sequence