Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3721.1 and Xcc-8004.3722.1 overlap by 4 nucleotides Xcc-8004.3722.1 and Xcc-8004.3723.1 overlap by 8 nucleotides Xcc-8004.3723.1 and Xcc-8004.3724.1 overlap by 11 nucleotides Xcc-8004.3724.1 and Xcc-8004.3725.1 overlap by 16 nucleotides
Xcc-8004.3721.1: Xcc-8004.3721.1 - Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components), at 3,599,736 to 3,600,566
Xcc-8004.3721.1
Xcc-8004.3722.1: Xcc-8004.3722.1 - HrpB7 protein, at 3,600,563 to 3,601,072
Xcc-8004.3722.1
Xcc-8004.3723.1: Xcc-8004.3723.1 - hypothetical protein, at 3,601,065 to 3,602,393
Xcc-8004.3723.1
Xcc-8004.3724.1: Xcc-8004.3724.1 - Type III secretion cytoplasmic protein (YscL), at 3,602,383 to 3,603,084
Xcc-8004.3724.1
Xcc-8004.3725.1: Xcc-8004.3725.1 - HrpB4 protein, at 3,603,069 to 3,603,698
Xcc-8004.3725.1
Position (kb) 3601
3602
3603 Strain fitness (log2 ratio) -2
-1
0
1 at 3600.279 kb on - strand, within Xcc-8004.3721.1 at 3600.406 kb on + strand, within Xcc-8004.3721.1 at 3600.407 kb on - strand, within Xcc-8004.3721.1 at 3600.691 kb on - strand, within Xcc-8004.3722.1 at 3601.111 kb on + strand at 3601.112 kb on - strand at 3601.678 kb on + strand, within Xcc-8004.3723.1 at 3601.678 kb on + strand, within Xcc-8004.3723.1 at 3601.678 kb on + strand, within Xcc-8004.3723.1 at 3601.679 kb on - strand, within Xcc-8004.3723.1 at 3602.321 kb on - strand at 3602.678 kb on + strand, within Xcc-8004.3724.1 at 3602.679 kb on - strand, within Xcc-8004.3724.1 at 3602.840 kb on + strand, within Xcc-8004.3724.1 at 3603.328 kb on + strand, within Xcc-8004.3725.1
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 3,600,279 - Xcc-8004.3721.1 0.65 +0.4 3,600,406 + Xcc-8004.3721.1 0.81 -2.0 3,600,407 - Xcc-8004.3721.1 0.81 -1.8 3,600,691 - Xcc-8004.3722.1 0.25 +0.3 3,601,111 + -1.7 3,601,112 - +0.3 3,601,678 + Xcc-8004.3723.1 0.46 -1.1 3,601,678 + Xcc-8004.3723.1 0.46 -0.4 3,601,678 + Xcc-8004.3723.1 0.46 -0.8 3,601,679 - Xcc-8004.3723.1 0.46 -0.6 3,602,321 - -0.2 3,602,678 + Xcc-8004.3724.1 0.42 +1.3 3,602,679 - Xcc-8004.3724.1 0.42 -0.7 3,602,840 + Xcc-8004.3724.1 0.65 -0.2 3,603,328 + Xcc-8004.3725.1 0.41 -0.9
Or see this region's nucleotide sequence