Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3338.1 and Xcc-8004.3339.1 are separated by 174 nucleotides Xcc-8004.3339.1 and Xcc-8004.3340.1 overlap by 1 nucleotides Xcc-8004.3340.1 and Xcc-8004.3341.1 overlap by 4 nucleotides
Xcc-8004.3338.1: Xcc-8004.3338.1 - FIG00613368: hypothetical protein, at 3,239,062 to 3,240,021
Xcc-8004.3338.1
Xcc-8004.3339.1: Xcc-8004.3339.1 - N-acetylglutamate synthase (EC 2.3.1.1), at 3,240,196 to 3,240,747
Xcc-8004.3339.1
Xcc-8004.3340.1: Xcc-8004.3340.1 - FIG01209728: hypothetical protein, at 3,240,747 to 3,241,274
Xcc-8004.3340.1
Xcc-8004.3341.1: Xcc-8004.3341.1 - FIG01209903: hypothetical protein, at 3,241,271 to 3,241,762
Xcc-8004.3341.1
Position (kb) 3240
3241 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3239.357 kb on + strand, within Xcc-8004.3338.1 at 3239.357 kb on + strand, within Xcc-8004.3338.1 at 3239.357 kb on + strand, within Xcc-8004.3338.1 at 3239.358 kb on - strand, within Xcc-8004.3338.1 at 3239.358 kb on - strand, within Xcc-8004.3338.1 at 3239.390 kb on + strand, within Xcc-8004.3338.1 at 3239.391 kb on - strand, within Xcc-8004.3338.1 at 3239.574 kb on - strand, within Xcc-8004.3338.1 at 3239.720 kb on + strand, within Xcc-8004.3338.1 at 3239.721 kb on - strand, within Xcc-8004.3338.1 at 3239.765 kb on + strand, within Xcc-8004.3338.1 at 3239.765 kb on + strand, within Xcc-8004.3338.1 at 3239.765 kb on + strand, within Xcc-8004.3338.1 at 3239.765 kb on + strand, within Xcc-8004.3338.1 at 3239.765 kb on + strand, within Xcc-8004.3338.1 at 3239.766 kb on - strand, within Xcc-8004.3338.1 at 3239.766 kb on - strand, within Xcc-8004.3338.1 at 3239.766 kb on - strand, within Xcc-8004.3338.1 at 3239.766 kb on - strand, within Xcc-8004.3338.1 at 3239.766 kb on - strand, within Xcc-8004.3338.1 at 3240.156 kb on - strand at 3240.222 kb on - strand at 3240.530 kb on + strand, within Xcc-8004.3339.1 at 3240.530 kb on + strand, within Xcc-8004.3339.1 at 3240.530 kb on + strand, within Xcc-8004.3339.1 at 3240.530 kb on + strand, within Xcc-8004.3339.1 at 3240.531 kb on - strand, within Xcc-8004.3339.1 at 3240.615 kb on + strand, within Xcc-8004.3339.1 at 3240.729 kb on + strand at 3240.729 kb on + strand at 3240.730 kb on - strand at 3240.730 kb on - strand at 3240.730 kb on - strand at 3241.021 kb on + strand, within Xcc-8004.3340.1 at 3241.021 kb on + strand, within Xcc-8004.3340.1 at 3241.021 kb on + strand, within Xcc-8004.3340.1 at 3241.021 kb on + strand, within Xcc-8004.3340.1 at 3241.021 kb on + strand, within Xcc-8004.3340.1 at 3241.022 kb on - strand, within Xcc-8004.3340.1 at 3241.022 kb on - strand, within Xcc-8004.3340.1 at 3241.022 kb on - strand, within Xcc-8004.3340.1 at 3241.022 kb on - strand, within Xcc-8004.3340.1 at 3241.022 kb on - strand, within Xcc-8004.3340.1 at 3241.022 kb on - strand, within Xcc-8004.3340.1 at 3241.274 kb on + strand at 3241.274 kb on + strand at 3241.358 kb on - strand, within Xcc-8004.3341.1 at 3241.359 kb on + strand, within Xcc-8004.3341.1 at 3241.359 kb on + strand, within Xcc-8004.3341.1 at 3241.602 kb on + strand, within Xcc-8004.3341.1 at 3241.602 kb on + strand, within Xcc-8004.3341.1 at 3241.602 kb on + strand, within Xcc-8004.3341.1 at 3241.602 kb on + strand, within Xcc-8004.3341.1 at 3241.603 kb on - strand, within Xcc-8004.3341.1 at 3241.624 kb on + strand, within Xcc-8004.3341.1
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 3,239,357 + Xcc-8004.3338.1 0.31 -0.2 3,239,357 + Xcc-8004.3338.1 0.31 -0.3 3,239,357 + Xcc-8004.3338.1 0.31 -0.6 3,239,358 - Xcc-8004.3338.1 0.31 -0.4 3,239,358 - Xcc-8004.3338.1 0.31 -0.0 3,239,390 + Xcc-8004.3338.1 0.34 +2.2 3,239,391 - Xcc-8004.3338.1 0.34 -0.4 3,239,574 - Xcc-8004.3338.1 0.53 +0.1 3,239,720 + Xcc-8004.3338.1 0.69 +0.4 3,239,721 - Xcc-8004.3338.1 0.69 -0.2 3,239,765 + Xcc-8004.3338.1 0.73 +0.6 3,239,765 + Xcc-8004.3338.1 0.73 +0.1 3,239,765 + Xcc-8004.3338.1 0.73 +0.3 3,239,765 + Xcc-8004.3338.1 0.73 -1.9 3,239,765 + Xcc-8004.3338.1 0.73 -0.5 3,239,766 - Xcc-8004.3338.1 0.73 +0.6 3,239,766 - Xcc-8004.3338.1 0.73 +0.7 3,239,766 - Xcc-8004.3338.1 0.73 -0.2 3,239,766 - Xcc-8004.3338.1 0.73 +0.2 3,239,766 - Xcc-8004.3338.1 0.73 -0.7 3,240,156 - -0.8 3,240,222 - +0.2 3,240,530 + Xcc-8004.3339.1 0.61 -0.1 3,240,530 + Xcc-8004.3339.1 0.61 +0.0 3,240,530 + Xcc-8004.3339.1 0.61 -1.5 3,240,530 + Xcc-8004.3339.1 0.61 -2.0 3,240,531 - Xcc-8004.3339.1 0.61 -1.0 3,240,615 + Xcc-8004.3339.1 0.76 -1.4 3,240,729 + -0.0 3,240,729 + +1.0 3,240,730 - -0.1 3,240,730 - +0.1 3,240,730 - -1.1 3,241,021 + Xcc-8004.3340.1 0.52 -0.5 3,241,021 + Xcc-8004.3340.1 0.52 -1.0 3,241,021 + Xcc-8004.3340.1 0.52 +0.8 3,241,021 + Xcc-8004.3340.1 0.52 +0.2 3,241,021 + Xcc-8004.3340.1 0.52 +0.3 3,241,022 - Xcc-8004.3340.1 0.52 -0.2 3,241,022 - Xcc-8004.3340.1 0.52 +0.3 3,241,022 - Xcc-8004.3340.1 0.52 +0.3 3,241,022 - Xcc-8004.3340.1 0.52 +2.4 3,241,022 - Xcc-8004.3340.1 0.52 -1.1 3,241,022 - Xcc-8004.3340.1 0.52 +0.5 3,241,274 + -0.1 3,241,274 + +1.4 3,241,358 - Xcc-8004.3341.1 0.18 -0.2 3,241,359 + Xcc-8004.3341.1 0.18 +0.6 3,241,359 + Xcc-8004.3341.1 0.18 +0.8 3,241,602 + Xcc-8004.3341.1 0.67 +0.8 3,241,602 + Xcc-8004.3341.1 0.67 -0.6 3,241,602 + Xcc-8004.3341.1 0.67 +0.7 3,241,602 + Xcc-8004.3341.1 0.67 +0.5 3,241,603 - Xcc-8004.3341.1 0.67 -0.3 3,241,624 + Xcc-8004.3341.1 0.72 -1.1
Or see this region's nucleotide sequence