Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.312.1

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.311.1 and Xcc-8004.312.1 are separated by 190 nucleotidesXcc-8004.312.1 and Xcc-8004.314.1 are separated by 3 nucleotides Xcc-8004.311.1: Xcc-8004.311.1 - Isocitrate lyase (EC 4.1.3.1), at 298,841 to 300,136 Xcc-8004.311.1 Xcc-8004.312.1: Xcc-8004.312.1 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 300,327 to 301,370 Xcc-8004.312.1 Xcc-8004.314.1: Xcc-8004.314.1 - Adenylate cyclase (EC 4.6.1.1), at 301,374 to 304,034 Xcc-8004.314.1 Position (kb) 300 301 302Strain fitness (log2 ratio) -3 -2 -1 0 1at 299.654 kb on + strand, within Xcc-8004.311.1at 299.654 kb on + strand, within Xcc-8004.311.1at 299.655 kb on - strand, within Xcc-8004.311.1at 299.765 kb on + strand, within Xcc-8004.311.1at 299.765 kb on + strand, within Xcc-8004.311.1at 299.765 kb on + strand, within Xcc-8004.311.1at 299.766 kb on - strand, within Xcc-8004.311.1at 299.766 kb on - strand, within Xcc-8004.311.1at 299.766 kb on - strand, within Xcc-8004.311.1at 299.766 kb on - strand, within Xcc-8004.311.1at 299.766 kb on - strand, within Xcc-8004.311.1at 299.767 kb on + strand, within Xcc-8004.311.1at 299.767 kb on + strand, within Xcc-8004.311.1at 299.767 kb on + strand, within Xcc-8004.311.1at 299.768 kb on - strand, within Xcc-8004.311.1at 299.768 kb on - strand, within Xcc-8004.311.1at 299.768 kb on - strand, within Xcc-8004.311.1at 299.768 kb on - strand, within Xcc-8004.311.1at 299.768 kb on - strand, within Xcc-8004.311.1at 299.846 kb on + strand, within Xcc-8004.311.1at 299.846 kb on + strand, within Xcc-8004.311.1at 299.846 kb on + strand, within Xcc-8004.311.1at 299.846 kb on + strand, within Xcc-8004.311.1at 299.846 kb on + strand, within Xcc-8004.311.1at 299.846 kb on + strand, within Xcc-8004.311.1at 299.846 kb on + strand, within Xcc-8004.311.1at 299.846 kb on + strand, within Xcc-8004.311.1at 299.846 kb on + strand, within Xcc-8004.311.1at 299.846 kb on + strand, within Xcc-8004.311.1at 299.846 kb on + strand, within Xcc-8004.311.1at 299.847 kb on - strand, within Xcc-8004.311.1at 299.847 kb on - strand, within Xcc-8004.311.1at 299.847 kb on - strand, within Xcc-8004.311.1at 299.847 kb on - strand, within Xcc-8004.311.1at 299.847 kb on - strand, within Xcc-8004.311.1at 299.847 kb on - strand, within Xcc-8004.311.1at 299.847 kb on - strand, within Xcc-8004.311.1at 299.852 kb on + strand, within Xcc-8004.311.1at 299.852 kb on + strand, within Xcc-8004.311.1at 299.853 kb on - strand, within Xcc-8004.311.1at 299.853 kb on - strand, within Xcc-8004.311.1at 299.853 kb on - strand, within Xcc-8004.311.1at 299.897 kb on + strand, within Xcc-8004.311.1at 299.897 kb on + strand, within Xcc-8004.311.1at 299.897 kb on + strand, within Xcc-8004.311.1at 299.898 kb on - strand, within Xcc-8004.311.1at 299.898 kb on - strand, within Xcc-8004.311.1at 299.902 kb on + strand, within Xcc-8004.311.1at 299.902 kb on + strand, within Xcc-8004.311.1at 299.902 kb on + strand, within Xcc-8004.311.1at 299.902 kb on + strand, within Xcc-8004.311.1at 299.902 kb on + strand, within Xcc-8004.311.1at 299.902 kb on + strand, within Xcc-8004.311.1at 299.903 kb on - strand, within Xcc-8004.311.1at 299.903 kb on - strand, within Xcc-8004.311.1at 299.903 kb on - strand, within Xcc-8004.311.1at 299.903 kb on - strand, within Xcc-8004.311.1at 299.995 kb on + strand, within Xcc-8004.311.1at 299.996 kb on - strand, within Xcc-8004.311.1at 299.996 kb on - strand, within Xcc-8004.311.1at 300.134 kb on + strandat 300.134 kb on + strandat 300.135 kb on - strandat 300.135 kb on - strandat 300.135 kb on - strandat 300.135 kb on - strandat 300.279 kb on + strandat 300.280 kb on - strandat 300.280 kb on - strandat 300.315 kb on + strandat 300.338 kb on + strandat 300.338 kb on + strandat 300.338 kb on + strandat 300.338 kb on + strandat 300.338 kb on + strandat 300.339 kb on - strandat 300.449 kb on + strand, within Xcc-8004.312.1at 300.450 kb on - strand, within Xcc-8004.312.1at 300.828 kb on + strand, within Xcc-8004.312.1at 300.828 kb on + strand, within Xcc-8004.312.1at 300.828 kb on + strand, within Xcc-8004.312.1at 300.828 kb on + strand, within Xcc-8004.312.1at 300.828 kb on + strand, within Xcc-8004.312.1at 300.829 kb on - strand, within Xcc-8004.312.1at 300.829 kb on - strand, within Xcc-8004.312.1at 300.829 kb on - strand, within Xcc-8004.312.1at 300.829 kb on - strand, within Xcc-8004.312.1at 301.008 kb on + strand, within Xcc-8004.312.1at 301.008 kb on + strand, within Xcc-8004.312.1at 301.009 kb on - strand, within Xcc-8004.312.1at 301.266 kb on + strandat 301.266 kb on + strandat 301.266 kb on + strandat 301.266 kb on + strandat 301.266 kb on + strandat 301.267 kb on - strandat 301.267 kb on - strandat 301.267 kb on - strandat 301.267 kb on - strandat 301.267 kb on - strandat 301.268 kb on + strandat 301.269 kb on - strandat 301.279 kb on - strandat 301.279 kb on - strandat 301.279 kb on - strandat 301.279 kb on - strandat 301.279 kb on - strandat 301.280 kb on + strandat 301.303 kb on - strandat 301.303 kb on - strandat 301.341 kb on + strandat 301.342 kb on - strandat 301.342 kb on - strandat 301.368 kb on + strandat 301.368 kb on + strandat 301.435 kb on + strandat 301.436 kb on - strandat 301.436 kb on - strandat 301.968 kb on + strand, within Xcc-8004.314.1at 301.968 kb on + strand, within Xcc-8004.314.1at 301.968 kb on + strand, within Xcc-8004.314.1at 301.969 kb on - strand, within Xcc-8004.314.1at 301.969 kb on - strand, within Xcc-8004.314.1at 302.036 kb on + strand, within Xcc-8004.314.1at 302.080 kb on + strand, within Xcc-8004.314.1at 302.081 kb on - strand, within Xcc-8004.314.1at 302.253 kb on + strand, within Xcc-8004.314.1at 302.360 kb on - strand, within Xcc-8004.314.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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299,654 + Xcc-8004.311.1 0.63 -0.4
299,654 + Xcc-8004.311.1 0.63 -0.6
299,655 - Xcc-8004.311.1 0.63 -0.9
299,765 + Xcc-8004.311.1 0.71 -0.0
299,765 + Xcc-8004.311.1 0.71 -0.2
299,765 + Xcc-8004.311.1 0.71 +1.4
299,766 - Xcc-8004.311.1 0.71 -1.0
299,766 - Xcc-8004.311.1 0.71 +0.1
299,766 - Xcc-8004.311.1 0.71 +0.3
299,766 - Xcc-8004.311.1 0.71 +0.2
299,766 - Xcc-8004.311.1 0.71 -0.4
299,767 + Xcc-8004.311.1 0.71 -0.7
299,767 + Xcc-8004.311.1 0.71 +0.8
299,767 + Xcc-8004.311.1 0.71 -0.1
299,768 - Xcc-8004.311.1 0.72 -0.1
299,768 - Xcc-8004.311.1 0.72 +0.3
299,768 - Xcc-8004.311.1 0.72 +0.8
299,768 - Xcc-8004.311.1 0.72 +1.3
299,768 - Xcc-8004.311.1 0.72 +1.3
299,846 + Xcc-8004.311.1 0.78 +0.8
299,846 + Xcc-8004.311.1 0.78 +0.8
299,846 + Xcc-8004.311.1 0.78 +0.3
299,846 + Xcc-8004.311.1 0.78 -1.3
299,846 + Xcc-8004.311.1 0.78 +0.1
299,846 + Xcc-8004.311.1 0.78 +0.6
299,846 + Xcc-8004.311.1 0.78 -0.9
299,846 + Xcc-8004.311.1 0.78 +1.7
299,846 + Xcc-8004.311.1 0.78 +0.2
299,846 + Xcc-8004.311.1 0.78 -2.2
299,846 + Xcc-8004.311.1 0.78 -0.5
299,847 - Xcc-8004.311.1 0.78 -0.6
299,847 - Xcc-8004.311.1 0.78 -1.6
299,847 - Xcc-8004.311.1 0.78 -0.0
299,847 - Xcc-8004.311.1 0.78 -1.0
299,847 - Xcc-8004.311.1 0.78 -1.2
299,847 - Xcc-8004.311.1 0.78 +0.8
299,847 - Xcc-8004.311.1 0.78 -0.0
299,852 + Xcc-8004.311.1 0.78 -0.3
299,852 + Xcc-8004.311.1 0.78 -1.1
299,853 - Xcc-8004.311.1 0.78 -0.8
299,853 - Xcc-8004.311.1 0.78 -0.9
299,853 - Xcc-8004.311.1 0.78 -0.2
299,897 + Xcc-8004.311.1 0.81 -0.5
299,897 + Xcc-8004.311.1 0.81 +0.5
299,897 + Xcc-8004.311.1 0.81 -0.2
299,898 - Xcc-8004.311.1 0.82 +0.4
299,898 - Xcc-8004.311.1 0.82 +0.7
299,902 + Xcc-8004.311.1 0.82 +0.4
299,902 + Xcc-8004.311.1 0.82 -0.9
299,902 + Xcc-8004.311.1 0.82 -2.8
299,902 + Xcc-8004.311.1 0.82 -1.1
299,902 + Xcc-8004.311.1 0.82 -0.7
299,902 + Xcc-8004.311.1 0.82 +0.2
299,903 - Xcc-8004.311.1 0.82 -0.2
299,903 - Xcc-8004.311.1 0.82 -0.7
299,903 - Xcc-8004.311.1 0.82 -1.1
299,903 - Xcc-8004.311.1 0.82 +0.0
299,995 + Xcc-8004.311.1 0.89 -0.2
299,996 - Xcc-8004.311.1 0.89 -0.3
299,996 - Xcc-8004.311.1 0.89 -0.8
300,134 + -0.3
300,134 + -0.6
300,135 - -0.0
300,135 - +0.3
300,135 - +0.4
300,135 - -0.4
300,279 + -0.8
300,280 - +1.0
300,280 - +1.2
300,315 + +0.1
300,338 + +0.3
300,338 + +0.3
300,338 + -0.3
300,338 + +0.7
300,338 + +1.5
300,339 - +0.0
300,449 + Xcc-8004.312.1 0.12 -1.6
300,450 - Xcc-8004.312.1 0.12 -0.3
300,828 + Xcc-8004.312.1 0.48 +0.2
300,828 + Xcc-8004.312.1 0.48 +0.4
300,828 + Xcc-8004.312.1 0.48 -1.3
300,828 + Xcc-8004.312.1 0.48 -1.7
300,828 + Xcc-8004.312.1 0.48 -0.4
300,829 - Xcc-8004.312.1 0.48 +0.2
300,829 - Xcc-8004.312.1 0.48 -0.6
300,829 - Xcc-8004.312.1 0.48 -0.6
300,829 - Xcc-8004.312.1 0.48 -1.0
301,008 + Xcc-8004.312.1 0.65 -0.2
301,008 + Xcc-8004.312.1 0.65 -2.1
301,009 - Xcc-8004.312.1 0.65 +0.1
301,266 + -0.9
301,266 + +0.3
301,266 + -0.2
301,266 + -0.0
301,266 + -1.5
301,267 - +0.3
301,267 - -0.3
301,267 - +0.9
301,267 - +0.0
301,267 - +0.2
301,268 + +0.1
301,269 - -0.1
301,279 - +0.5
301,279 - +0.7
301,279 - +0.4
301,279 - +0.1
301,279 - +0.4
301,280 + -0.9
301,303 - -0.1
301,303 - +0.8
301,341 + +1.1
301,342 - -0.3
301,342 - -0.7
301,368 + -0.4
301,368 + -0.1
301,435 + -0.6
301,436 - +0.1
301,436 - +0.1
301,968 + Xcc-8004.314.1 0.22 -0.9
301,968 + Xcc-8004.314.1 0.22 +0.0
301,968 + Xcc-8004.314.1 0.22 -0.4
301,969 - Xcc-8004.314.1 0.22 +1.3
301,969 - Xcc-8004.314.1 0.22 +1.0
302,036 + Xcc-8004.314.1 0.25 -1.6
302,080 + Xcc-8004.314.1 0.27 +0.3
302,081 - Xcc-8004.314.1 0.27 +0.5
302,253 + Xcc-8004.314.1 0.33 -0.6
302,360 - Xcc-8004.314.1 0.37 +0.4

Or see this region's nucleotide sequence