Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2574.1

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2572.1 and Xcc-8004.2574.1 are separated by 3 nucleotidesXcc-8004.2574.1 and Xcc-8004.2575.1 are separated by 15 nucleotides Xcc-8004.2572.1: Xcc-8004.2572.1 - FIG141751: hypothetical protein in PFGI-1-like cluster, at 2,481,453 to 2,482,679 Xcc-8004.2572.1 Xcc-8004.2574.1: Xcc-8004.2574.1 - FIG004780: hypothetical protein in PFGI-1-like cluster, at 2,482,683 to 2,483,243 Xcc-8004.2574.1 Xcc-8004.2575.1: Xcc-8004.2575.1 - Protein with ParB-like nuclease domain in PFGI-1-like cluster, at 2,483,259 to 2,484,902 Xcc-8004.2575.1 Position (kb) 2482 2483 2484Strain fitness (log2 ratio) -2 -1 0 1 2at 2481.694 kb on - strand, within Xcc-8004.2572.1at 2481.726 kb on + strand, within Xcc-8004.2572.1at 2481.830 kb on + strand, within Xcc-8004.2572.1at 2481.831 kb on - strand, within Xcc-8004.2572.1at 2481.834 kb on - strand, within Xcc-8004.2572.1at 2481.834 kb on - strand, within Xcc-8004.2572.1at 2481.837 kb on + strand, within Xcc-8004.2572.1at 2481.838 kb on - strand, within Xcc-8004.2572.1at 2481.838 kb on - strand, within Xcc-8004.2572.1at 2481.838 kb on - strand, within Xcc-8004.2572.1at 2481.845 kb on + strand, within Xcc-8004.2572.1at 2481.846 kb on - strand, within Xcc-8004.2572.1at 2481.848 kb on + strand, within Xcc-8004.2572.1at 2481.849 kb on - strand, within Xcc-8004.2572.1at 2481.849 kb on - strand, within Xcc-8004.2572.1at 2481.854 kb on + strand, within Xcc-8004.2572.1at 2481.855 kb on - strand, within Xcc-8004.2572.1at 2481.857 kb on + strand, within Xcc-8004.2572.1at 2481.858 kb on - strand, within Xcc-8004.2572.1at 2481.861 kb on + strand, within Xcc-8004.2572.1at 2481.861 kb on + strand, within Xcc-8004.2572.1at 2481.861 kb on + strand, within Xcc-8004.2572.1at 2481.861 kb on + strand, within Xcc-8004.2572.1at 2481.861 kb on + strand, within Xcc-8004.2572.1at 2481.862 kb on - strand, within Xcc-8004.2572.1at 2481.862 kb on - strand, within Xcc-8004.2572.1at 2481.862 kb on - strand, within Xcc-8004.2572.1at 2481.862 kb on - strand, within Xcc-8004.2572.1at 2481.866 kb on + strand, within Xcc-8004.2572.1at 2481.866 kb on + strand, within Xcc-8004.2572.1at 2481.867 kb on - strand, within Xcc-8004.2572.1at 2481.867 kb on - strand, within Xcc-8004.2572.1at 2482.007 kb on - strand, within Xcc-8004.2572.1at 2482.183 kb on + strand, within Xcc-8004.2572.1at 2482.183 kb on + strand, within Xcc-8004.2572.1at 2482.184 kb on - strand, within Xcc-8004.2572.1at 2482.202 kb on + strand, within Xcc-8004.2572.1at 2482.240 kb on + strand, within Xcc-8004.2572.1at 2482.240 kb on + strand, within Xcc-8004.2572.1at 2482.240 kb on + strand, within Xcc-8004.2572.1at 2482.240 kb on + strand, within Xcc-8004.2572.1at 2482.240 kb on + strand, within Xcc-8004.2572.1at 2482.240 kb on + strand, within Xcc-8004.2572.1at 2482.241 kb on - strand, within Xcc-8004.2572.1at 2482.241 kb on - strand, within Xcc-8004.2572.1at 2482.335 kb on + strand, within Xcc-8004.2572.1at 2482.399 kb on + strand, within Xcc-8004.2572.1at 2482.399 kb on + strand, within Xcc-8004.2572.1at 2482.399 kb on + strand, within Xcc-8004.2572.1at 2482.399 kb on + strand, within Xcc-8004.2572.1at 2482.399 kb on + strand, within Xcc-8004.2572.1at 2482.399 kb on + strand, within Xcc-8004.2572.1at 2482.400 kb on - strand, within Xcc-8004.2572.1at 2482.400 kb on - strand, within Xcc-8004.2572.1at 2482.400 kb on - strand, within Xcc-8004.2572.1at 2482.400 kb on - strand, within Xcc-8004.2572.1at 2482.400 kb on - strand, within Xcc-8004.2572.1at 2482.553 kb on + strand, within Xcc-8004.2572.1at 2482.553 kb on + strand, within Xcc-8004.2572.1at 2482.553 kb on + strand, within Xcc-8004.2572.1at 2482.553 kb on + strand, within Xcc-8004.2572.1at 2482.554 kb on - strand, within Xcc-8004.2572.1at 2482.554 kb on - strand, within Xcc-8004.2572.1at 2482.554 kb on - strand, within Xcc-8004.2572.1at 2482.554 kb on - strand, within Xcc-8004.2572.1at 2482.554 kb on - strand, within Xcc-8004.2572.1at 2482.559 kb on + strandat 2482.580 kb on + strandat 2482.580 kb on + strandat 2482.580 kb on + strandat 2482.580 kb on + strandat 2482.580 kb on + strandat 2482.587 kb on - strandat 2482.633 kb on - strandat 2482.867 kb on - strand, within Xcc-8004.2574.1at 2482.968 kb on - strand, within Xcc-8004.2574.1at 2483.034 kb on + strand, within Xcc-8004.2574.1at 2483.035 kb on - strand, within Xcc-8004.2574.1at 2483.194 kb on + strandat 2483.194 kb on + strandat 2483.195 kb on - strandat 2483.195 kb on - strandat 2483.382 kb on + strandat 2483.382 kb on + strandat 2483.383 kb on - strandat 2483.383 kb on - strandat 2483.504 kb on + strand, within Xcc-8004.2575.1at 2483.505 kb on - strand, within Xcc-8004.2575.1at 2483.636 kb on - strand, within Xcc-8004.2575.1at 2483.636 kb on - strand, within Xcc-8004.2575.1at 2483.636 kb on - strand, within Xcc-8004.2575.1at 2483.636 kb on - strand, within Xcc-8004.2575.1at 2483.656 kb on + strand, within Xcc-8004.2575.1at 2483.656 kb on + strand, within Xcc-8004.2575.1at 2483.792 kb on + strand, within Xcc-8004.2575.1at 2483.792 kb on + strand, within Xcc-8004.2575.1at 2483.792 kb on + strand, within Xcc-8004.2575.1at 2483.792 kb on + strand, within Xcc-8004.2575.1at 2483.793 kb on - strand, within Xcc-8004.2575.1at 2483.793 kb on - strand, within Xcc-8004.2575.1at 2483.793 kb on - strand, within Xcc-8004.2575.1at 2483.793 kb on - strand, within Xcc-8004.2575.1at 2483.900 kb on + strand, within Xcc-8004.2575.1at 2483.900 kb on + strand, within Xcc-8004.2575.1at 2483.901 kb on - strand, within Xcc-8004.2575.1at 2484.061 kb on + strand, within Xcc-8004.2575.1at 2484.061 kb on + strand, within Xcc-8004.2575.1at 2484.208 kb on + strand, within Xcc-8004.2575.1at 2484.209 kb on - strand, within Xcc-8004.2575.1at 2484.209 kb on - strand, within Xcc-8004.2575.1at 2484.209 kb on - strand, within Xcc-8004.2575.1at 2484.211 kb on + strand, within Xcc-8004.2575.1at 2484.212 kb on - strand, within Xcc-8004.2575.1at 2484.212 kb on - strand, within Xcc-8004.2575.1at 2484.212 kb on - strand, within Xcc-8004.2575.1at 2484.212 kb on - strand, within Xcc-8004.2575.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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2,481,694 - Xcc-8004.2572.1 0.20 +0.3
2,481,726 + Xcc-8004.2572.1 0.22 +0.0
2,481,830 + Xcc-8004.2572.1 0.31 -1.1
2,481,831 - Xcc-8004.2572.1 0.31 +0.6
2,481,834 - Xcc-8004.2572.1 0.31 -1.9
2,481,834 - Xcc-8004.2572.1 0.31 +1.8
2,481,837 + Xcc-8004.2572.1 0.31 +1.4
2,481,838 - Xcc-8004.2572.1 0.31 -0.5
2,481,838 - Xcc-8004.2572.1 0.31 -0.9
2,481,838 - Xcc-8004.2572.1 0.31 -0.9
2,481,845 + Xcc-8004.2572.1 0.32 +0.0
2,481,846 - Xcc-8004.2572.1 0.32 +0.4
2,481,848 + Xcc-8004.2572.1 0.32 -0.6
2,481,849 - Xcc-8004.2572.1 0.32 -0.1
2,481,849 - Xcc-8004.2572.1 0.32 +0.1
2,481,854 + Xcc-8004.2572.1 0.33 -0.9
2,481,855 - Xcc-8004.2572.1 0.33 -0.0
2,481,857 + Xcc-8004.2572.1 0.33 +0.2
2,481,858 - Xcc-8004.2572.1 0.33 +0.8
2,481,861 + Xcc-8004.2572.1 0.33 -1.5
2,481,861 + Xcc-8004.2572.1 0.33 -0.3
2,481,861 + Xcc-8004.2572.1 0.33 -0.3
2,481,861 + Xcc-8004.2572.1 0.33 +1.3
2,481,861 + Xcc-8004.2572.1 0.33 -0.1
2,481,862 - Xcc-8004.2572.1 0.33 +1.8
2,481,862 - Xcc-8004.2572.1 0.33 -0.9
2,481,862 - Xcc-8004.2572.1 0.33 +0.4
2,481,862 - Xcc-8004.2572.1 0.33 +1.2
2,481,866 + Xcc-8004.2572.1 0.34 +0.4
2,481,866 + Xcc-8004.2572.1 0.34 +0.4
2,481,867 - Xcc-8004.2572.1 0.34 +0.3
2,481,867 - Xcc-8004.2572.1 0.34 +0.5
2,482,007 - Xcc-8004.2572.1 0.45 -1.1
2,482,183 + Xcc-8004.2572.1 0.59 +0.0
2,482,183 + Xcc-8004.2572.1 0.59 +0.1
2,482,184 - Xcc-8004.2572.1 0.60 -1.5
2,482,202 + Xcc-8004.2572.1 0.61 +0.2
2,482,240 + Xcc-8004.2572.1 0.64 +0.8
2,482,240 + Xcc-8004.2572.1 0.64 +0.7
2,482,240 + Xcc-8004.2572.1 0.64 -0.3
2,482,240 + Xcc-8004.2572.1 0.64 +0.1
2,482,240 + Xcc-8004.2572.1 0.64 +0.5
2,482,240 + Xcc-8004.2572.1 0.64 +0.1
2,482,241 - Xcc-8004.2572.1 0.64 -1.4
2,482,241 - Xcc-8004.2572.1 0.64 -0.7
2,482,335 + Xcc-8004.2572.1 0.72 -0.5
2,482,399 + Xcc-8004.2572.1 0.77 +0.2
2,482,399 + Xcc-8004.2572.1 0.77 -1.6
2,482,399 + Xcc-8004.2572.1 0.77 -0.6
2,482,399 + Xcc-8004.2572.1 0.77 +1.0
2,482,399 + Xcc-8004.2572.1 0.77 -1.3
2,482,399 + Xcc-8004.2572.1 0.77 -0.7
2,482,400 - Xcc-8004.2572.1 0.77 -0.8
2,482,400 - Xcc-8004.2572.1 0.77 +0.7
2,482,400 - Xcc-8004.2572.1 0.77 +0.7
2,482,400 - Xcc-8004.2572.1 0.77 +0.1
2,482,400 - Xcc-8004.2572.1 0.77 -1.7
2,482,553 + Xcc-8004.2572.1 0.90 +0.4
2,482,553 + Xcc-8004.2572.1 0.90 -1.3
2,482,553 + Xcc-8004.2572.1 0.90 -0.8
2,482,553 + Xcc-8004.2572.1 0.90 -0.3
2,482,554 - Xcc-8004.2572.1 0.90 +0.2
2,482,554 - Xcc-8004.2572.1 0.90 +0.1
2,482,554 - Xcc-8004.2572.1 0.90 -0.0
2,482,554 - Xcc-8004.2572.1 0.90 +0.9
2,482,554 - Xcc-8004.2572.1 0.90 +0.2
2,482,559 + +0.3
2,482,580 + +0.4
2,482,580 + +0.1
2,482,580 + -1.5
2,482,580 + -0.4
2,482,580 + -0.4
2,482,587 - +1.1
2,482,633 - +0.2
2,482,867 - Xcc-8004.2574.1 0.33 -0.5
2,482,968 - Xcc-8004.2574.1 0.51 -0.9
2,483,034 + Xcc-8004.2574.1 0.63 -1.0
2,483,035 - Xcc-8004.2574.1 0.63 -0.2
2,483,194 + +0.1
2,483,194 + +0.2
2,483,195 - -0.3
2,483,195 - -0.9
2,483,382 + -0.7
2,483,382 + -1.2
2,483,383 - -0.7
2,483,383 - -1.7
2,483,504 + Xcc-8004.2575.1 0.15 +0.7
2,483,505 - Xcc-8004.2575.1 0.15 -0.1
2,483,636 - Xcc-8004.2575.1 0.23 +0.5
2,483,636 - Xcc-8004.2575.1 0.23 -0.6
2,483,636 - Xcc-8004.2575.1 0.23 -1.1
2,483,636 - Xcc-8004.2575.1 0.23 -0.7
2,483,656 + Xcc-8004.2575.1 0.24 +2.4
2,483,656 + Xcc-8004.2575.1 0.24 +0.0
2,483,792 + Xcc-8004.2575.1 0.32 -0.7
2,483,792 + Xcc-8004.2575.1 0.32 +0.4
2,483,792 + Xcc-8004.2575.1 0.32 +0.4
2,483,792 + Xcc-8004.2575.1 0.32 -0.3
2,483,793 - Xcc-8004.2575.1 0.32 +0.1
2,483,793 - Xcc-8004.2575.1 0.32 +0.6
2,483,793 - Xcc-8004.2575.1 0.32 -1.2
2,483,793 - Xcc-8004.2575.1 0.32 +0.1
2,483,900 + Xcc-8004.2575.1 0.39 +0.3
2,483,900 + Xcc-8004.2575.1 0.39 -0.1
2,483,901 - Xcc-8004.2575.1 0.39 -0.1
2,484,061 + Xcc-8004.2575.1 0.49 +1.2
2,484,061 + Xcc-8004.2575.1 0.49 +0.1
2,484,208 + Xcc-8004.2575.1 0.58 +0.0
2,484,209 - Xcc-8004.2575.1 0.58 -1.0
2,484,209 - Xcc-8004.2575.1 0.58 -0.6
2,484,209 - Xcc-8004.2575.1 0.58 +0.1
2,484,211 + Xcc-8004.2575.1 0.58 -0.4
2,484,212 - Xcc-8004.2575.1 0.58 -1.2
2,484,212 - Xcc-8004.2575.1 0.58 +0.1
2,484,212 - Xcc-8004.2575.1 0.58 +0.7
2,484,212 - Xcc-8004.2575.1 0.58 +0.1

Or see this region's nucleotide sequence