Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2099.1

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2098.1 and Xcc-8004.2099.1 overlap by 11 nucleotidesXcc-8004.2099.1 and Xcc-8004.2100.1 overlap by 16 nucleotides Xcc-8004.2098.1: Xcc-8004.2098.1 - Glycosyltransferase family A (GT-A), at 2,012,502 to 2,013,650 Xcc-8004.2098.1 Xcc-8004.2099.1: Xcc-8004.2099.1 - FIG01210647: hypothetical protein, at 2,013,640 to 2,014,242 Xcc-8004.2099.1 Xcc-8004.2100.1: Xcc-8004.2100.1 - FIG01117206: hypothetical protein, at 2,014,227 to 2,015,483 Xcc-8004.2100.1 Position (kb) 2013 2014 2015Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2012.918 kb on - strand, within Xcc-8004.2098.1at 2012.985 kb on + strand, within Xcc-8004.2098.1at 2012.985 kb on + strand, within Xcc-8004.2098.1at 2012.985 kb on + strand, within Xcc-8004.2098.1at 2012.985 kb on + strand, within Xcc-8004.2098.1at 2012.988 kb on + strand, within Xcc-8004.2098.1at 2012.988 kb on + strand, within Xcc-8004.2098.1at 2012.988 kb on + strand, within Xcc-8004.2098.1at 2012.989 kb on - strand, within Xcc-8004.2098.1at 2012.989 kb on - strand, within Xcc-8004.2098.1at 2013.057 kb on + strand, within Xcc-8004.2098.1at 2013.057 kb on + strand, within Xcc-8004.2098.1at 2013.058 kb on - strand, within Xcc-8004.2098.1at 2013.058 kb on - strand, within Xcc-8004.2098.1at 2013.108 kb on + strand, within Xcc-8004.2098.1at 2013.108 kb on + strand, within Xcc-8004.2098.1at 2013.109 kb on - strand, within Xcc-8004.2098.1at 2013.276 kb on + strand, within Xcc-8004.2098.1at 2013.276 kb on + strand, within Xcc-8004.2098.1at 2013.276 kb on + strand, within Xcc-8004.2098.1at 2013.277 kb on - strand, within Xcc-8004.2098.1at 2013.277 kb on - strand, within Xcc-8004.2098.1at 2013.580 kb on + strandat 2013.775 kb on + strand, within Xcc-8004.2099.1at 2013.775 kb on + strand, within Xcc-8004.2099.1at 2013.775 kb on + strand, within Xcc-8004.2099.1at 2013.775 kb on + strand, within Xcc-8004.2099.1at 2013.775 kb on + strand, within Xcc-8004.2099.1at 2013.775 kb on + strand, within Xcc-8004.2099.1at 2013.776 kb on - strand, within Xcc-8004.2099.1at 2013.776 kb on - strand, within Xcc-8004.2099.1at 2013.776 kb on - strand, within Xcc-8004.2099.1at 2013.776 kb on - strand, within Xcc-8004.2099.1at 2013.962 kb on + strand, within Xcc-8004.2099.1at 2013.962 kb on + strand, within Xcc-8004.2099.1at 2013.962 kb on + strand, within Xcc-8004.2099.1at 2013.963 kb on - strand, within Xcc-8004.2099.1at 2013.963 kb on - strand, within Xcc-8004.2099.1at 2013.963 kb on - strand, within Xcc-8004.2099.1at 2013.963 kb on - strand, within Xcc-8004.2099.1at 2014.018 kb on + strand, within Xcc-8004.2099.1at 2014.102 kb on + strand, within Xcc-8004.2099.1at 2014.103 kb on - strand, within Xcc-8004.2099.1at 2014.147 kb on + strand, within Xcc-8004.2099.1at 2014.147 kb on + strand, within Xcc-8004.2099.1at 2014.147 kb on + strand, within Xcc-8004.2099.1at 2014.148 kb on - strand, within Xcc-8004.2099.1at 2014.254 kb on + strandat 2014.254 kb on + strandat 2014.254 kb on + strandat 2014.255 kb on - strandat 2014.255 kb on - strandat 2014.328 kb on + strandat 2014.329 kb on - strandat 2014.524 kb on + strand, within Xcc-8004.2100.1at 2014.524 kb on + strand, within Xcc-8004.2100.1at 2014.525 kb on - strand, within Xcc-8004.2100.1at 2014.525 kb on - strand, within Xcc-8004.2100.1at 2014.525 kb on - strand, within Xcc-8004.2100.1at 2014.665 kb on + strand, within Xcc-8004.2100.1at 2014.665 kb on + strand, within Xcc-8004.2100.1at 2014.665 kb on + strand, within Xcc-8004.2100.1at 2014.666 kb on - strand, within Xcc-8004.2100.1at 2014.695 kb on - strand, within Xcc-8004.2100.1at 2014.833 kb on + strand, within Xcc-8004.2100.1at 2014.834 kb on - strand, within Xcc-8004.2100.1at 2014.834 kb on - strand, within Xcc-8004.2100.1at 2015.038 kb on + strand, within Xcc-8004.2100.1at 2015.038 kb on + strand, within Xcc-8004.2100.1at 2015.039 kb on - strand, within Xcc-8004.2100.1at 2015.039 kb on - strand, within Xcc-8004.2100.1at 2015.039 kb on - strand, within Xcc-8004.2100.1at 2015.039 kb on - strand, within Xcc-8004.2100.1at 2015.127 kb on + strand, within Xcc-8004.2100.1at 2015.128 kb on - strand, within Xcc-8004.2100.1at 2015.128 kb on - strand, within Xcc-8004.2100.1at 2015.142 kb on + strand, within Xcc-8004.2100.1at 2015.143 kb on - strand, within Xcc-8004.2100.1at 2015.172 kb on + strand, within Xcc-8004.2100.1at 2015.172 kb on + strand, within Xcc-8004.2100.1at 2015.172 kb on + strand, within Xcc-8004.2100.1at 2015.173 kb on - strand, within Xcc-8004.2100.1at 2015.173 kb on - strand, within Xcc-8004.2100.1at 2015.173 kb on - strand, within Xcc-8004.2100.1at 2015.173 kb on - strand, within Xcc-8004.2100.1at 2015.173 kb on - strand, within Xcc-8004.2100.1at 2015.211 kb on + strand, within Xcc-8004.2100.1at 2015.212 kb on - strand, within Xcc-8004.2100.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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2,012,918 - Xcc-8004.2098.1 0.36 +0.5
2,012,985 + Xcc-8004.2098.1 0.42 -1.0
2,012,985 + Xcc-8004.2098.1 0.42 +0.0
2,012,985 + Xcc-8004.2098.1 0.42 +0.5
2,012,985 + Xcc-8004.2098.1 0.42 -2.0
2,012,988 + Xcc-8004.2098.1 0.42 +2.4
2,012,988 + Xcc-8004.2098.1 0.42 +1.1
2,012,988 + Xcc-8004.2098.1 0.42 +1.0
2,012,989 - Xcc-8004.2098.1 0.42 +3.0
2,012,989 - Xcc-8004.2098.1 0.42 -1.2
2,013,057 + Xcc-8004.2098.1 0.48 +0.3
2,013,057 + Xcc-8004.2098.1 0.48 +0.4
2,013,058 - Xcc-8004.2098.1 0.48 +0.0
2,013,058 - Xcc-8004.2098.1 0.48 -0.4
2,013,108 + Xcc-8004.2098.1 0.53 +0.5
2,013,108 + Xcc-8004.2098.1 0.53 +0.0
2,013,109 - Xcc-8004.2098.1 0.53 -0.0
2,013,276 + Xcc-8004.2098.1 0.67 +0.2
2,013,276 + Xcc-8004.2098.1 0.67 -0.9
2,013,276 + Xcc-8004.2098.1 0.67 -1.2
2,013,277 - Xcc-8004.2098.1 0.67 -0.7
2,013,277 - Xcc-8004.2098.1 0.67 -1.0
2,013,580 + +0.1
2,013,775 + Xcc-8004.2099.1 0.22 -0.7
2,013,775 + Xcc-8004.2099.1 0.22 -1.2
2,013,775 + Xcc-8004.2099.1 0.22 +1.5
2,013,775 + Xcc-8004.2099.1 0.22 -0.0
2,013,775 + Xcc-8004.2099.1 0.22 -1.5
2,013,775 + Xcc-8004.2099.1 0.22 -1.1
2,013,776 - Xcc-8004.2099.1 0.23 +2.4
2,013,776 - Xcc-8004.2099.1 0.23 +1.4
2,013,776 - Xcc-8004.2099.1 0.23 -0.9
2,013,776 - Xcc-8004.2099.1 0.23 +0.5
2,013,962 + Xcc-8004.2099.1 0.53 +1.4
2,013,962 + Xcc-8004.2099.1 0.53 -0.8
2,013,962 + Xcc-8004.2099.1 0.53 -1.8
2,013,963 - Xcc-8004.2099.1 0.54 -1.0
2,013,963 - Xcc-8004.2099.1 0.54 -1.0
2,013,963 - Xcc-8004.2099.1 0.54 +0.3
2,013,963 - Xcc-8004.2099.1 0.54 -2.1
2,014,018 + Xcc-8004.2099.1 0.63 -3.4
2,014,102 + Xcc-8004.2099.1 0.77 -0.2
2,014,103 - Xcc-8004.2099.1 0.77 -1.5
2,014,147 + Xcc-8004.2099.1 0.84 -0.8
2,014,147 + Xcc-8004.2099.1 0.84 -0.1
2,014,147 + Xcc-8004.2099.1 0.84 -2.1
2,014,148 - Xcc-8004.2099.1 0.84 +0.6
2,014,254 + +0.4
2,014,254 + -0.4
2,014,254 + -0.3
2,014,255 - +0.3
2,014,255 - -0.7
2,014,328 + -0.6
2,014,329 - -1.0
2,014,524 + Xcc-8004.2100.1 0.24 -0.3
2,014,524 + Xcc-8004.2100.1 0.24 -0.5
2,014,525 - Xcc-8004.2100.1 0.24 -0.0
2,014,525 - Xcc-8004.2100.1 0.24 +1.2
2,014,525 - Xcc-8004.2100.1 0.24 -0.0
2,014,665 + Xcc-8004.2100.1 0.35 -0.6
2,014,665 + Xcc-8004.2100.1 0.35 +0.6
2,014,665 + Xcc-8004.2100.1 0.35 +0.8
2,014,666 - Xcc-8004.2100.1 0.35 +0.8
2,014,695 - Xcc-8004.2100.1 0.37 -1.1
2,014,833 + Xcc-8004.2100.1 0.48 -0.5
2,014,834 - Xcc-8004.2100.1 0.48 +1.0
2,014,834 - Xcc-8004.2100.1 0.48 -0.6
2,015,038 + Xcc-8004.2100.1 0.65 +0.1
2,015,038 + Xcc-8004.2100.1 0.65 -0.6
2,015,039 - Xcc-8004.2100.1 0.65 -0.3
2,015,039 - Xcc-8004.2100.1 0.65 +1.4
2,015,039 - Xcc-8004.2100.1 0.65 +0.1
2,015,039 - Xcc-8004.2100.1 0.65 +1.2
2,015,127 + Xcc-8004.2100.1 0.72 -0.4
2,015,128 - Xcc-8004.2100.1 0.72 -0.3
2,015,128 - Xcc-8004.2100.1 0.72 -2.0
2,015,142 + Xcc-8004.2100.1 0.73 +0.2
2,015,143 - Xcc-8004.2100.1 0.73 +1.0
2,015,172 + Xcc-8004.2100.1 0.75 +0.2
2,015,172 + Xcc-8004.2100.1 0.75 +0.6
2,015,172 + Xcc-8004.2100.1 0.75 +0.3
2,015,173 - Xcc-8004.2100.1 0.75 +0.1
2,015,173 - Xcc-8004.2100.1 0.75 -0.8
2,015,173 - Xcc-8004.2100.1 0.75 +0.3
2,015,173 - Xcc-8004.2100.1 0.75 +0.0
2,015,173 - Xcc-8004.2100.1 0.75 +0.8
2,015,211 + Xcc-8004.2100.1 0.78 +0.3
2,015,212 - Xcc-8004.2100.1 0.78 +0.6

Or see this region's nucleotide sequence