Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1796.1

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1795.1 and Xcc-8004.1796.1 overlap by 8 nucleotidesXcc-8004.1796.1 and Xcc-8004.1797.1 are separated by 271 nucleotides Xcc-8004.1795.1: Xcc-8004.1795.1 - RND efflux system, outer membrane lipoprotein CmeC, at 1,731,551 to 1,733,044 Xcc-8004.1795.1 Xcc-8004.1796.1: Xcc-8004.1796.1 - hypothetical protein, at 1,733,037 to 1,733,759 Xcc-8004.1796.1 Xcc-8004.1797.1: Xcc-8004.1797.1 - Aldo-keto reductase, at 1,734,031 to 1,735,014 Xcc-8004.1797.1 Position (kb) 1733 1734Strain fitness (log2 ratio) -3 -2 -1 0 1at 1732.075 kb on + strand, within Xcc-8004.1795.1at 1732.076 kb on - strand, within Xcc-8004.1795.1at 1732.115 kb on + strand, within Xcc-8004.1795.1at 1732.152 kb on + strand, within Xcc-8004.1795.1at 1732.153 kb on - strand, within Xcc-8004.1795.1at 1732.187 kb on + strand, within Xcc-8004.1795.1at 1732.290 kb on - strand, within Xcc-8004.1795.1at 1732.290 kb on - strand, within Xcc-8004.1795.1at 1732.868 kb on + strand, within Xcc-8004.1795.1at 1732.868 kb on + strand, within Xcc-8004.1795.1at 1732.869 kb on - strand, within Xcc-8004.1795.1at 1732.902 kb on - strandat 1732.964 kb on + strandat 1732.965 kb on - strandat 1732.965 kb on - strandat 1732.965 kb on - strandat 1733.141 kb on + strand, within Xcc-8004.1796.1at 1733.214 kb on + strand, within Xcc-8004.1796.1at 1733.214 kb on + strand, within Xcc-8004.1796.1at 1733.214 kb on + strand, within Xcc-8004.1796.1at 1733.214 kb on + strand, within Xcc-8004.1796.1at 1733.215 kb on - strand, within Xcc-8004.1796.1at 1733.220 kb on + strand, within Xcc-8004.1796.1at 1733.221 kb on - strand, within Xcc-8004.1796.1at 1733.221 kb on - strand, within Xcc-8004.1796.1at 1733.394 kb on + strand, within Xcc-8004.1796.1at 1733.395 kb on - strand, within Xcc-8004.1796.1at 1733.466 kb on + strand, within Xcc-8004.1796.1at 1733.631 kb on + strand, within Xcc-8004.1796.1at 1734.036 kb on + strandat 1734.036 kb on + strandat 1734.036 kb on + strandat 1734.036 kb on + strandat 1734.037 kb on - strandat 1734.037 kb on - strandat 1734.103 kb on + strandat 1734.104 kb on - strandat 1734.199 kb on + strand, within Xcc-8004.1797.1at 1734.379 kb on - strand, within Xcc-8004.1797.1at 1734.391 kb on + strand, within Xcc-8004.1797.1at 1734.392 kb on - strand, within Xcc-8004.1797.1at 1734.557 kb on - strand, within Xcc-8004.1797.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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1,732,075 + Xcc-8004.1795.1 0.35 +1.0
1,732,076 - Xcc-8004.1795.1 0.35 +0.4
1,732,115 + Xcc-8004.1795.1 0.38 +0.8
1,732,152 + Xcc-8004.1795.1 0.40 -0.8
1,732,153 - Xcc-8004.1795.1 0.40 +0.5
1,732,187 + Xcc-8004.1795.1 0.43 -3.0
1,732,290 - Xcc-8004.1795.1 0.49 -0.6
1,732,290 - Xcc-8004.1795.1 0.49 -0.8
1,732,868 + Xcc-8004.1795.1 0.88 +0.0
1,732,868 + Xcc-8004.1795.1 0.88 +0.7
1,732,869 - Xcc-8004.1795.1 0.88 +0.4
1,732,902 - +1.4
1,732,964 + -0.9
1,732,965 - -0.7
1,732,965 - +0.0
1,732,965 - -0.7
1,733,141 + Xcc-8004.1796.1 0.14 -0.3
1,733,214 + Xcc-8004.1796.1 0.24 -0.3
1,733,214 + Xcc-8004.1796.1 0.24 +1.0
1,733,214 + Xcc-8004.1796.1 0.24 +0.6
1,733,214 + Xcc-8004.1796.1 0.24 +1.3
1,733,215 - Xcc-8004.1796.1 0.25 +0.5
1,733,220 + Xcc-8004.1796.1 0.25 +0.6
1,733,221 - Xcc-8004.1796.1 0.25 -0.9
1,733,221 - Xcc-8004.1796.1 0.25 +1.4
1,733,394 + Xcc-8004.1796.1 0.49 +0.8
1,733,395 - Xcc-8004.1796.1 0.50 -1.6
1,733,466 + Xcc-8004.1796.1 0.59 +0.7
1,733,631 + Xcc-8004.1796.1 0.82 -0.9
1,734,036 + -0.1
1,734,036 + -0.2
1,734,036 + -0.2
1,734,036 + +1.0
1,734,037 - -0.3
1,734,037 - -0.4
1,734,103 + -0.1
1,734,104 - +0.9
1,734,199 + Xcc-8004.1797.1 0.17 +0.1
1,734,379 - Xcc-8004.1797.1 0.35 -0.6
1,734,391 + Xcc-8004.1797.1 0.37 +0.1
1,734,392 - Xcc-8004.1797.1 0.37 -1.3
1,734,557 - Xcc-8004.1797.1 0.53 +0.5

Or see this region's nucleotide sequence