Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1770.1

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1768.1 and Xcc-8004.1769.1 are separated by 14 nucleotidesXcc-8004.1769.1 and Xcc-8004.1770.1 overlap by 17 nucleotidesXcc-8004.1770.1 and Xcc-8004.1771.1 are separated by 26 nucleotidesXcc-8004.1771.1 and Xcc-8004.1772.1 are separated by 10 nucleotides Xcc-8004.1768.1: Xcc-8004.1768.1 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 1,699,709 to 1,700,818 Xcc-8004.1768.1 Xcc-8004.1769.1: Xcc-8004.1769.1 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 1,700,833 to 1,701,660 Xcc-8004.1769.1 Xcc-8004.1770.1: Xcc-8004.1770.1 - hypothetical protein, at 1,701,644 to 1,702,927 Xcc-8004.1770.1 Xcc-8004.1771.1: Xcc-8004.1771.1 - Positive regulator of CheA protein activity (CheW), at 1,702,954 to 1,703,469 Xcc-8004.1771.1 Xcc-8004.1772.1: Xcc-8004.1772.1 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 1,703,480 to 1,705,615 Xcc-8004.1772.1 Position (kb) 1701 1702 1703Strain fitness (log2 ratio) -2 -1 0 1at 1700.841 kb on + strandat 1700.984 kb on + strand, within Xcc-8004.1769.1at 1701.111 kb on - strand, within Xcc-8004.1769.1at 1701.135 kb on - strand, within Xcc-8004.1769.1at 1701.146 kb on + strand, within Xcc-8004.1769.1at 1701.146 kb on + strand, within Xcc-8004.1769.1at 1701.146 kb on + strand, within Xcc-8004.1769.1at 1701.147 kb on - strand, within Xcc-8004.1769.1at 1701.488 kb on + strand, within Xcc-8004.1769.1at 1701.488 kb on + strand, within Xcc-8004.1769.1at 1701.488 kb on + strand, within Xcc-8004.1769.1at 1701.759 kb on + strandat 1701.944 kb on - strand, within Xcc-8004.1770.1at 1701.944 kb on - strand, within Xcc-8004.1770.1at 1701.991 kb on - strand, within Xcc-8004.1770.1at 1701.991 kb on - strand, within Xcc-8004.1770.1at 1702.398 kb on + strand, within Xcc-8004.1770.1at 1702.399 kb on - strand, within Xcc-8004.1770.1at 1702.399 kb on - strand, within Xcc-8004.1770.1at 1703.255 kb on - strand, within Xcc-8004.1771.1at 1703.255 kb on - strand, within Xcc-8004.1771.1at 1703.411 kb on + strand, within Xcc-8004.1771.1at 1703.412 kb on - strand, within Xcc-8004.1771.1at 1703.453 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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1,700,841 + -0.6
1,700,984 + Xcc-8004.1769.1 0.18 +0.0
1,701,111 - Xcc-8004.1769.1 0.34 -1.7
1,701,135 - Xcc-8004.1769.1 0.36 +0.4
1,701,146 + Xcc-8004.1769.1 0.38 -0.1
1,701,146 + Xcc-8004.1769.1 0.38 +0.6
1,701,146 + Xcc-8004.1769.1 0.38 +0.6
1,701,147 - Xcc-8004.1769.1 0.38 -0.9
1,701,488 + Xcc-8004.1769.1 0.79 +1.2
1,701,488 + Xcc-8004.1769.1 0.79 -0.3
1,701,488 + Xcc-8004.1769.1 0.79 -1.8
1,701,759 + -0.2
1,701,944 - Xcc-8004.1770.1 0.23 -0.3
1,701,944 - Xcc-8004.1770.1 0.23 -1.0
1,701,991 - Xcc-8004.1770.1 0.27 +0.4
1,701,991 - Xcc-8004.1770.1 0.27 -0.9
1,702,398 + Xcc-8004.1770.1 0.59 -0.2
1,702,399 - Xcc-8004.1770.1 0.59 -1.3
1,702,399 - Xcc-8004.1770.1 0.59 -2.1
1,703,255 - Xcc-8004.1771.1 0.58 -0.4
1,703,255 - Xcc-8004.1771.1 0.58 -0.7
1,703,411 + Xcc-8004.1771.1 0.89 +0.4
1,703,412 - Xcc-8004.1771.1 0.89 +0.5
1,703,453 - +0.0

Or see this region's nucleotide sequence