Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1654.1

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1653.1 and Xcc-8004.1654.1 are separated by 98 nucleotidesXcc-8004.1654.1 and Xcc-8004.1655.1 are separated by 143 nucleotides Xcc-8004.1653.1: Xcc-8004.1653.1 - FIG01210004: hypothetical protein, at 1,592,592 to 1,593,386 Xcc-8004.1653.1 Xcc-8004.1654.1: Xcc-8004.1654.1 - Mg/Co/Ni transporter MgtE / CBS domain, at 1,593,485 to 1,594,846 Xcc-8004.1654.1 Xcc-8004.1655.1: Xcc-8004.1655.1 - Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 1,594,990 to 1,596,720 Xcc-8004.1655.1 Position (kb) 1593 1594 1595Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1592.497 kb on + strandat 1592.498 kb on - strandat 1592.575 kb on + strandat 1592.576 kb on - strandat 1592.641 kb on + strandat 1592.641 kb on + strandat 1592.642 kb on - strandat 1592.642 kb on - strandat 1592.686 kb on + strand, within Xcc-8004.1653.1at 1592.722 kb on + strand, within Xcc-8004.1653.1at 1592.819 kb on - strand, within Xcc-8004.1653.1at 1592.851 kb on + strand, within Xcc-8004.1653.1at 1592.852 kb on - strand, within Xcc-8004.1653.1at 1592.852 kb on - strand, within Xcc-8004.1653.1at 1592.852 kb on - strand, within Xcc-8004.1653.1at 1592.852 kb on - strand, within Xcc-8004.1653.1at 1592.852 kb on - strand, within Xcc-8004.1653.1at 1592.980 kb on + strand, within Xcc-8004.1653.1at 1592.980 kb on + strand, within Xcc-8004.1653.1at 1592.980 kb on + strand, within Xcc-8004.1653.1at 1592.980 kb on + strand, within Xcc-8004.1653.1at 1592.981 kb on - strand, within Xcc-8004.1653.1at 1592.981 kb on - strand, within Xcc-8004.1653.1at 1592.981 kb on - strand, within Xcc-8004.1653.1at 1593.250 kb on + strand, within Xcc-8004.1653.1at 1593.256 kb on + strand, within Xcc-8004.1653.1at 1593.257 kb on - strand, within Xcc-8004.1653.1at 1593.257 kb on - strand, within Xcc-8004.1653.1at 1594.082 kb on - strand, within Xcc-8004.1654.1at 1594.317 kb on + strand, within Xcc-8004.1654.1at 1594.318 kb on - strand, within Xcc-8004.1654.1at 1594.620 kb on - strand, within Xcc-8004.1654.1at 1594.805 kb on + strandat 1594.805 kb on + strandat 1594.806 kb on - strandat 1594.806 kb on - strandat 1594.806 kb on - strandat 1594.806 kb on - strandat 1594.806 kb on - strandat 1594.937 kb on + strandat 1594.937 kb on + strandat 1594.938 kb on - strandat 1594.938 kb on - strandat 1594.938 kb on - strandat 1595.116 kb on + strandat 1595.116 kb on + strandat 1595.117 kb on - strandat 1595.294 kb on + strand, within Xcc-8004.1655.1at 1595.295 kb on - strand, within Xcc-8004.1655.1at 1595.295 kb on - strand, within Xcc-8004.1655.1at 1595.295 kb on - strand, within Xcc-8004.1655.1at 1595.339 kb on + strand, within Xcc-8004.1655.1at 1595.339 kb on + strand, within Xcc-8004.1655.1at 1595.340 kb on - strand, within Xcc-8004.1655.1at 1595.340 kb on - strand, within Xcc-8004.1655.1at 1595.340 kb on - strand, within Xcc-8004.1655.1at 1595.340 kb on - strand, within Xcc-8004.1655.1at 1595.340 kb on - strand, within Xcc-8004.1655.1at 1595.721 kb on + strand, within Xcc-8004.1655.1at 1595.722 kb on - strand, within Xcc-8004.1655.1at 1595.722 kb on - strand, within Xcc-8004.1655.1at 1595.768 kb on + strand, within Xcc-8004.1655.1at 1595.769 kb on - strand, within Xcc-8004.1655.1at 1595.834 kb on + strand, within Xcc-8004.1655.1at 1595.835 kb on - strand, within Xcc-8004.1655.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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1,592,497 + -0.2
1,592,498 - -0.5
1,592,575 + -2.9
1,592,576 - -1.3
1,592,641 + -0.6
1,592,641 + +0.8
1,592,642 - -1.1
1,592,642 - +0.3
1,592,686 + Xcc-8004.1653.1 0.12 -1.1
1,592,722 + Xcc-8004.1653.1 0.16 -2.0
1,592,819 - Xcc-8004.1653.1 0.29 +0.5
1,592,851 + Xcc-8004.1653.1 0.33 -1.5
1,592,852 - Xcc-8004.1653.1 0.33 +0.0
1,592,852 - Xcc-8004.1653.1 0.33 -0.1
1,592,852 - Xcc-8004.1653.1 0.33 -0.5
1,592,852 - Xcc-8004.1653.1 0.33 -0.5
1,592,852 - Xcc-8004.1653.1 0.33 +0.6
1,592,980 + Xcc-8004.1653.1 0.49 -1.4
1,592,980 + Xcc-8004.1653.1 0.49 -1.8
1,592,980 + Xcc-8004.1653.1 0.49 +0.5
1,592,980 + Xcc-8004.1653.1 0.49 -1.0
1,592,981 - Xcc-8004.1653.1 0.49 -1.1
1,592,981 - Xcc-8004.1653.1 0.49 +0.8
1,592,981 - Xcc-8004.1653.1 0.49 -0.2
1,593,250 + Xcc-8004.1653.1 0.83 -0.1
1,593,256 + Xcc-8004.1653.1 0.84 -0.8
1,593,257 - Xcc-8004.1653.1 0.84 +0.5
1,593,257 - Xcc-8004.1653.1 0.84 +0.7
1,594,082 - Xcc-8004.1654.1 0.44 -0.6
1,594,317 + Xcc-8004.1654.1 0.61 +0.0
1,594,318 - Xcc-8004.1654.1 0.61 +3.4
1,594,620 - Xcc-8004.1654.1 0.83 -0.4
1,594,805 + +0.2
1,594,805 + +0.9
1,594,806 - +1.0
1,594,806 - +0.2
1,594,806 - -0.2
1,594,806 - -1.5
1,594,806 - +0.5
1,594,937 + -1.6
1,594,937 + -1.3
1,594,938 - +0.0
1,594,938 - -0.2
1,594,938 - -0.1
1,595,116 + -0.8
1,595,116 + +0.5
1,595,117 - +0.4
1,595,294 + Xcc-8004.1655.1 0.18 +0.6
1,595,295 - Xcc-8004.1655.1 0.18 -0.8
1,595,295 - Xcc-8004.1655.1 0.18 +0.1
1,595,295 - Xcc-8004.1655.1 0.18 +0.5
1,595,339 + Xcc-8004.1655.1 0.20 -0.5
1,595,339 + Xcc-8004.1655.1 0.20 -0.5
1,595,340 - Xcc-8004.1655.1 0.20 +2.1
1,595,340 - Xcc-8004.1655.1 0.20 +0.5
1,595,340 - Xcc-8004.1655.1 0.20 +1.4
1,595,340 - Xcc-8004.1655.1 0.20 +0.9
1,595,340 - Xcc-8004.1655.1 0.20 -1.8
1,595,721 + Xcc-8004.1655.1 0.42 +0.2
1,595,722 - Xcc-8004.1655.1 0.42 -0.5
1,595,722 - Xcc-8004.1655.1 0.42 -0.4
1,595,768 + Xcc-8004.1655.1 0.45 +1.8
1,595,769 - Xcc-8004.1655.1 0.45 +1.8
1,595,834 + Xcc-8004.1655.1 0.49 +1.7
1,595,835 - Xcc-8004.1655.1 0.49 +0.8

Or see this region's nucleotide sequence