Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1576.1

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1575.1 and Xcc-8004.1576.1 are separated by 56 nucleotidesXcc-8004.1576.1 and Xcc-8004.1577.1 are separated by 688 nucleotides Xcc-8004.1575.1: Xcc-8004.1575.1 - FIG01209855: hypothetical protein, at 1,511,704 to 1,513,068 Xcc-8004.1575.1 Xcc-8004.1576.1: Xcc-8004.1576.1 - FIG01211374: hypothetical protein, at 1,513,125 to 1,513,478 Xcc-8004.1576.1 Xcc-8004.1577.1: Xcc-8004.1577.1 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 1,514,167 to 1,516,641 Xcc-8004.1577.1 Position (kb) 1513 1514Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1512.214 kb on + strand, within Xcc-8004.1575.1at 1512.214 kb on + strand, within Xcc-8004.1575.1at 1512.214 kb on + strand, within Xcc-8004.1575.1at 1512.214 kb on + strand, within Xcc-8004.1575.1at 1512.214 kb on + strand, within Xcc-8004.1575.1at 1512.215 kb on - strand, within Xcc-8004.1575.1at 1512.215 kb on - strand, within Xcc-8004.1575.1at 1512.223 kb on + strand, within Xcc-8004.1575.1at 1512.224 kb on - strand, within Xcc-8004.1575.1at 1512.224 kb on - strand, within Xcc-8004.1575.1at 1512.224 kb on - strand, within Xcc-8004.1575.1at 1512.225 kb on + strand, within Xcc-8004.1575.1at 1512.226 kb on - strand, within Xcc-8004.1575.1at 1512.348 kb on - strand, within Xcc-8004.1575.1at 1512.526 kb on + strand, within Xcc-8004.1575.1at 1512.526 kb on + strand, within Xcc-8004.1575.1at 1512.527 kb on - strand, within Xcc-8004.1575.1at 1512.527 kb on - strand, within Xcc-8004.1575.1at 1512.527 kb on - strand, within Xcc-8004.1575.1at 1512.559 kb on + strand, within Xcc-8004.1575.1at 1512.560 kb on - strand, within Xcc-8004.1575.1at 1512.561 kb on + strand, within Xcc-8004.1575.1at 1512.562 kb on - strand, within Xcc-8004.1575.1at 1512.589 kb on + strand, within Xcc-8004.1575.1at 1512.589 kb on + strand, within Xcc-8004.1575.1at 1512.823 kb on + strand, within Xcc-8004.1575.1at 1512.823 kb on + strand, within Xcc-8004.1575.1at 1512.824 kb on - strand, within Xcc-8004.1575.1at 1512.824 kb on - strand, within Xcc-8004.1575.1at 1512.850 kb on + strand, within Xcc-8004.1575.1at 1512.851 kb on - strand, within Xcc-8004.1575.1at 1512.851 kb on - strand, within Xcc-8004.1575.1at 1512.851 kb on - strand, within Xcc-8004.1575.1at 1512.884 kb on - strand, within Xcc-8004.1575.1at 1512.884 kb on - strand, within Xcc-8004.1575.1at 1513.091 kb on + strandat 1513.091 kb on + strandat 1513.092 kb on - strandat 1513.104 kb on - strandat 1513.104 kb on - strandat 1513.124 kb on + strandat 1513.124 kb on + strandat 1513.125 kb on - strandat 1513.125 kb on - strandat 1513.125 kb on - strandat 1513.176 kb on + strand, within Xcc-8004.1576.1at 1513.176 kb on + strand, within Xcc-8004.1576.1at 1513.177 kb on - strand, within Xcc-8004.1576.1at 1513.177 kb on - strand, within Xcc-8004.1576.1at 1513.291 kb on - strand, within Xcc-8004.1576.1at 1513.398 kb on + strand, within Xcc-8004.1576.1at 1513.399 kb on - strand, within Xcc-8004.1576.1at 1513.399 kb on - strand, within Xcc-8004.1576.1at 1513.399 kb on - strand, within Xcc-8004.1576.1at 1513.485 kb on + strandat 1513.647 kb on + strandat 1513.920 kb on + strandat 1513.920 kb on + strandat 1513.920 kb on + strandat 1513.921 kb on - strandat 1514.435 kb on + strand, within Xcc-8004.1577.1at 1514.435 kb on + strand, within Xcc-8004.1577.1at 1514.436 kb on - strand, within Xcc-8004.1577.1at 1514.436 kb on - strand, within Xcc-8004.1577.1at 1514.436 kb on - strand, within Xcc-8004.1577.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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1,512,214 + Xcc-8004.1575.1 0.37 +0.8
1,512,214 + Xcc-8004.1575.1 0.37 +0.7
1,512,214 + Xcc-8004.1575.1 0.37 +1.2
1,512,214 + Xcc-8004.1575.1 0.37 +0.9
1,512,214 + Xcc-8004.1575.1 0.37 -0.3
1,512,215 - Xcc-8004.1575.1 0.37 -0.5
1,512,215 - Xcc-8004.1575.1 0.37 +0.3
1,512,223 + Xcc-8004.1575.1 0.38 -0.4
1,512,224 - Xcc-8004.1575.1 0.38 +0.2
1,512,224 - Xcc-8004.1575.1 0.38 -0.5
1,512,224 - Xcc-8004.1575.1 0.38 +0.1
1,512,225 + Xcc-8004.1575.1 0.38 -0.5
1,512,226 - Xcc-8004.1575.1 0.38 +0.4
1,512,348 - Xcc-8004.1575.1 0.47 -0.7
1,512,526 + Xcc-8004.1575.1 0.60 -1.7
1,512,526 + Xcc-8004.1575.1 0.60 -0.0
1,512,527 - Xcc-8004.1575.1 0.60 +1.9
1,512,527 - Xcc-8004.1575.1 0.60 -0.2
1,512,527 - Xcc-8004.1575.1 0.60 -0.4
1,512,559 + Xcc-8004.1575.1 0.63 -2.5
1,512,560 - Xcc-8004.1575.1 0.63 +0.7
1,512,561 + Xcc-8004.1575.1 0.63 -0.6
1,512,562 - Xcc-8004.1575.1 0.63 -0.7
1,512,589 + Xcc-8004.1575.1 0.65 +0.6
1,512,589 + Xcc-8004.1575.1 0.65 -1.1
1,512,823 + Xcc-8004.1575.1 0.82 +2.3
1,512,823 + Xcc-8004.1575.1 0.82 +0.8
1,512,824 - Xcc-8004.1575.1 0.82 -0.2
1,512,824 - Xcc-8004.1575.1 0.82 +1.0
1,512,850 + Xcc-8004.1575.1 0.84 -0.9
1,512,851 - Xcc-8004.1575.1 0.84 -1.2
1,512,851 - Xcc-8004.1575.1 0.84 +0.5
1,512,851 - Xcc-8004.1575.1 0.84 -1.1
1,512,884 - Xcc-8004.1575.1 0.86 +0.3
1,512,884 - Xcc-8004.1575.1 0.86 +0.1
1,513,091 + -0.5
1,513,091 + +0.7
1,513,092 - -0.4
1,513,104 - -0.1
1,513,104 - +0.1
1,513,124 + -1.2
1,513,124 + -1.2
1,513,125 - +0.7
1,513,125 - -0.3
1,513,125 - -1.5
1,513,176 + Xcc-8004.1576.1 0.14 +0.3
1,513,176 + Xcc-8004.1576.1 0.14 -0.7
1,513,177 - Xcc-8004.1576.1 0.15 +0.0
1,513,177 - Xcc-8004.1576.1 0.15 -1.4
1,513,291 - Xcc-8004.1576.1 0.47 -0.5
1,513,398 + Xcc-8004.1576.1 0.77 -0.4
1,513,399 - Xcc-8004.1576.1 0.77 -1.4
1,513,399 - Xcc-8004.1576.1 0.77 -1.9
1,513,399 - Xcc-8004.1576.1 0.77 -1.3
1,513,485 + +1.0
1,513,647 + -0.1
1,513,920 + +1.6
1,513,920 + -0.1
1,513,920 + +0.3
1,513,921 - -0.7
1,514,435 + Xcc-8004.1577.1 0.11 +0.1
1,514,435 + Xcc-8004.1577.1 0.11 +2.8
1,514,436 - Xcc-8004.1577.1 0.11 +2.3
1,514,436 - Xcc-8004.1577.1 0.11 -0.9
1,514,436 - Xcc-8004.1577.1 0.11 +0.1

Or see this region's nucleotide sequence