Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1465.1

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1463.1 and Xcc-8004.1464.1 are separated by 59 nucleotidesXcc-8004.1464.1 and Xcc-8004.1465.1 overlap by 195 nucleotidesXcc-8004.1465.1 and Xcc-8004.1466.1 are separated by 165 nucleotidesXcc-8004.1466.1 and Xcc-8004.1467.1 are separated by 162 nucleotides Xcc-8004.1463.1: Xcc-8004.1463.1 - Transcriptional regulator lysR family, at 1,394,404 to 1,395,321 Xcc-8004.1463.1 Xcc-8004.1464.1: Xcc-8004.1464.1 - hypothetical protein, at 1,395,381 to 1,395,623 Xcc-8004.1464.1 Xcc-8004.1465.1: Xcc-8004.1465.1 - Transporter, LysE family, at 1,395,429 to 1,396,055 Xcc-8004.1465.1 Xcc-8004.1466.1: Xcc-8004.1466.1 - Histone acetyltransferase HPA2 and related acetyltransferases, at 1,396,221 to 1,396,646 Xcc-8004.1466.1 Xcc-8004.1467.1: Xcc-8004.1467.1 - FIG01210828: hypothetical protein, at 1,396,809 to 1,397,156 Xcc-8004.1467.1 Position (kb) 1395 1396 1397Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1394.463 kb on + strandat 1394.464 kb on - strandat 1394.514 kb on - strand, within Xcc-8004.1463.1at 1394.658 kb on - strand, within Xcc-8004.1463.1at 1394.787 kb on - strand, within Xcc-8004.1463.1at 1394.893 kb on + strand, within Xcc-8004.1463.1at 1394.893 kb on + strand, within Xcc-8004.1463.1at 1394.894 kb on - strand, within Xcc-8004.1463.1at 1395.097 kb on + strand, within Xcc-8004.1463.1at 1395.097 kb on + strand, within Xcc-8004.1463.1at 1395.097 kb on + strand, within Xcc-8004.1463.1at 1395.097 kb on + strand, within Xcc-8004.1463.1at 1395.097 kb on + strand, within Xcc-8004.1463.1at 1395.098 kb on - strand, within Xcc-8004.1463.1at 1395.098 kb on - strand, within Xcc-8004.1463.1at 1395.098 kb on - strand, within Xcc-8004.1463.1at 1395.356 kb on + strandat 1395.357 kb on - strandat 1395.357 kb on - strandat 1395.364 kb on - strandat 1395.367 kb on + strandat 1395.376 kb on + strandat 1395.678 kb on + strand, within Xcc-8004.1465.1at 1395.678 kb on + strand, within Xcc-8004.1465.1at 1395.679 kb on - strand, within Xcc-8004.1465.1at 1395.807 kb on + strand, within Xcc-8004.1465.1at 1395.807 kb on + strand, within Xcc-8004.1465.1at 1395.807 kb on + strand, within Xcc-8004.1465.1at 1395.808 kb on - strand, within Xcc-8004.1465.1at 1395.901 kb on + strand, within Xcc-8004.1465.1at 1395.901 kb on + strand, within Xcc-8004.1465.1at 1395.902 kb on - strand, within Xcc-8004.1465.1at 1395.902 kb on - strand, within Xcc-8004.1465.1at 1395.902 kb on - strand, within Xcc-8004.1465.1at 1395.902 kb on - strand, within Xcc-8004.1465.1at 1395.925 kb on - strand, within Xcc-8004.1465.1at 1395.976 kb on + strand, within Xcc-8004.1465.1at 1396.018 kb on + strandat 1396.040 kb on + strandat 1396.040 kb on + strandat 1396.041 kb on - strandat 1396.413 kb on + strand, within Xcc-8004.1466.1at 1396.428 kb on + strand, within Xcc-8004.1466.1at 1396.429 kb on - strand, within Xcc-8004.1466.1at 1396.474 kb on - strand, within Xcc-8004.1466.1at 1396.567 kb on - strand, within Xcc-8004.1466.1at 1396.635 kb on + strandat 1396.635 kb on + strandat 1396.635 kb on + strandat 1396.635 kb on + strandat 1396.636 kb on - strandat 1396.636 kb on - strandat 1396.636 kb on - strandat 1396.680 kb on + strandat 1396.681 kb on - strandat 1396.749 kb on - strandat 1396.756 kb on - strandat 1396.871 kb on + strand, within Xcc-8004.1467.1at 1396.872 kb on - strand, within Xcc-8004.1467.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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1,394,463 + +0.9
1,394,464 - -3.0
1,394,514 - Xcc-8004.1463.1 0.12 -0.1
1,394,658 - Xcc-8004.1463.1 0.28 -0.8
1,394,787 - Xcc-8004.1463.1 0.42 -0.8
1,394,893 + Xcc-8004.1463.1 0.53 +0.4
1,394,893 + Xcc-8004.1463.1 0.53 +0.3
1,394,894 - Xcc-8004.1463.1 0.53 -1.1
1,395,097 + Xcc-8004.1463.1 0.75 -1.2
1,395,097 + Xcc-8004.1463.1 0.75 -0.1
1,395,097 + Xcc-8004.1463.1 0.75 -0.0
1,395,097 + Xcc-8004.1463.1 0.75 -1.1
1,395,097 + Xcc-8004.1463.1 0.75 +0.2
1,395,098 - Xcc-8004.1463.1 0.76 +0.1
1,395,098 - Xcc-8004.1463.1 0.76 -1.8
1,395,098 - Xcc-8004.1463.1 0.76 -0.0
1,395,356 + +0.1
1,395,357 - -0.2
1,395,357 - -2.4
1,395,364 - +0.3
1,395,367 + +2.3
1,395,376 + -1.2
1,395,678 + Xcc-8004.1465.1 0.40 -1.4
1,395,678 + Xcc-8004.1465.1 0.40 +0.4
1,395,679 - Xcc-8004.1465.1 0.40 -1.1
1,395,807 + Xcc-8004.1465.1 0.60 -0.4
1,395,807 + Xcc-8004.1465.1 0.60 -1.2
1,395,807 + Xcc-8004.1465.1 0.60 -0.7
1,395,808 - Xcc-8004.1465.1 0.60 -1.0
1,395,901 + Xcc-8004.1465.1 0.75 +0.3
1,395,901 + Xcc-8004.1465.1 0.75 -0.9
1,395,902 - Xcc-8004.1465.1 0.75 -1.1
1,395,902 - Xcc-8004.1465.1 0.75 -1.6
1,395,902 - Xcc-8004.1465.1 0.75 -0.1
1,395,902 - Xcc-8004.1465.1 0.75 -1.6
1,395,925 - Xcc-8004.1465.1 0.79 -0.3
1,395,976 + Xcc-8004.1465.1 0.87 +1.0
1,396,018 + +0.1
1,396,040 + +3.3
1,396,040 + +0.1
1,396,041 - +1.2
1,396,413 + Xcc-8004.1466.1 0.45 -1.2
1,396,428 + Xcc-8004.1466.1 0.49 -1.3
1,396,429 - Xcc-8004.1466.1 0.49 +0.2
1,396,474 - Xcc-8004.1466.1 0.59 -1.0
1,396,567 - Xcc-8004.1466.1 0.81 -0.1
1,396,635 + +0.1
1,396,635 + +0.7
1,396,635 + +0.2
1,396,635 + -0.7
1,396,636 - +1.0
1,396,636 - -0.2
1,396,636 - -0.4
1,396,680 + +0.2
1,396,681 - -0.4
1,396,749 - -1.0
1,396,756 - -0.4
1,396,871 + Xcc-8004.1467.1 0.18 -0.4
1,396,872 - Xcc-8004.1467.1 0.18 +0.4

Or see this region's nucleotide sequence