Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.115.1 and Xcc-8004.117.1 overlap by 4 nucleotides Xcc-8004.117.1 and Xcc-8004.118.1 are separated by 148 nucleotides
Xcc-8004.115.1: Xcc-8004.115.1 - FIG045085: Hypothetical protein, at 103,594 to 105,858
Xcc-8004.115.1
Xcc-8004.117.1: Xcc-8004.117.1 - FIG042594: DUF1550 domain-containing protein, at 105,855 to 107,036
Xcc-8004.117.1
Xcc-8004.118.1: Xcc-8004.118.1 - FIG037995: Hypothetical protein, at 107,185 to 108,081
Xcc-8004.118.1
Position (kb) 105
106
107
108 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 104.951 kb on + strand, within Xcc-8004.115.1 at 104.951 kb on + strand, within Xcc-8004.115.1 at 104.952 kb on - strand, within Xcc-8004.115.1 at 104.952 kb on - strand, within Xcc-8004.115.1 at 104.952 kb on - strand, within Xcc-8004.115.1 at 105.058 kb on + strand, within Xcc-8004.115.1 at 105.116 kb on + strand, within Xcc-8004.115.1 at 105.116 kb on + strand, within Xcc-8004.115.1 at 105.116 kb on + strand, within Xcc-8004.115.1 at 105.117 kb on - strand, within Xcc-8004.115.1 at 105.317 kb on + strand, within Xcc-8004.115.1 at 105.318 kb on - strand, within Xcc-8004.115.1 at 105.318 kb on - strand, within Xcc-8004.115.1 at 105.318 kb on - strand, within Xcc-8004.115.1 at 105.318 kb on - strand, within Xcc-8004.115.1 at 105.318 kb on - strand, within Xcc-8004.115.1 at 105.592 kb on + strand, within Xcc-8004.115.1 at 105.592 kb on + strand, within Xcc-8004.115.1 at 105.592 kb on + strand, within Xcc-8004.115.1 at 105.592 kb on + strand, within Xcc-8004.115.1 at 105.593 kb on - strand, within Xcc-8004.115.1 at 105.593 kb on - strand, within Xcc-8004.115.1 at 105.593 kb on - strand, within Xcc-8004.115.1 at 105.593 kb on - strand, within Xcc-8004.115.1 at 105.593 kb on - strand, within Xcc-8004.115.1 at 105.925 kb on + strand at 106.152 kb on + strand, within Xcc-8004.117.1 at 106.402 kb on + strand, within Xcc-8004.117.1 at 106.403 kb on - strand, within Xcc-8004.117.1 at 106.403 kb on - strand, within Xcc-8004.117.1 at 107.246 kb on + strand at 107.246 kb on + strand at 107.246 kb on + strand at 107.246 kb on + strand at 107.246 kb on + strand at 107.247 kb on - strand at 107.247 kb on - strand at 107.247 kb on - strand at 107.247 kb on - strand at 107.324 kb on + strand, within Xcc-8004.118.1 at 107.324 kb on + strand, within Xcc-8004.118.1 at 107.324 kb on + strand, within Xcc-8004.118.1 at 107.324 kb on + strand, within Xcc-8004.118.1 at 107.325 kb on - strand, within Xcc-8004.118.1 at 107.882 kb on + strand, within Xcc-8004.118.1 at 107.882 kb on + strand, within Xcc-8004.118.1 at 107.883 kb on - strand, within Xcc-8004.118.1 at 107.924 kb on + strand, within Xcc-8004.118.1 at 107.925 kb on - strand, within Xcc-8004.118.1
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 104,951 + Xcc-8004.115.1 0.60 -1.1 104,951 + Xcc-8004.115.1 0.60 -0.3 104,952 - Xcc-8004.115.1 0.60 -2.4 104,952 - Xcc-8004.115.1 0.60 +0.1 104,952 - Xcc-8004.115.1 0.60 +1.9 105,058 + Xcc-8004.115.1 0.65 -0.5 105,116 + Xcc-8004.115.1 0.67 +0.5 105,116 + Xcc-8004.115.1 0.67 -0.7 105,116 + Xcc-8004.115.1 0.67 +0.5 105,117 - Xcc-8004.115.1 0.67 +0.3 105,317 + Xcc-8004.115.1 0.76 -2.0 105,318 - Xcc-8004.115.1 0.76 -0.6 105,318 - Xcc-8004.115.1 0.76 +0.4 105,318 - Xcc-8004.115.1 0.76 -0.1 105,318 - Xcc-8004.115.1 0.76 -1.4 105,318 - Xcc-8004.115.1 0.76 +0.0 105,592 + Xcc-8004.115.1 0.88 +0.1 105,592 + Xcc-8004.115.1 0.88 +0.1 105,592 + Xcc-8004.115.1 0.88 -0.4 105,592 + Xcc-8004.115.1 0.88 -0.1 105,593 - Xcc-8004.115.1 0.88 -0.4 105,593 - Xcc-8004.115.1 0.88 -1.5 105,593 - Xcc-8004.115.1 0.88 -0.1 105,593 - Xcc-8004.115.1 0.88 -0.0 105,593 - Xcc-8004.115.1 0.88 -0.8 105,925 + +0.6 106,152 + Xcc-8004.117.1 0.25 -0.4 106,402 + Xcc-8004.117.1 0.46 -2.4 106,403 - Xcc-8004.117.1 0.46 -2.9 106,403 - Xcc-8004.117.1 0.46 +0.1 107,246 + -0.1 107,246 + +0.3 107,246 + +0.4 107,246 + -0.3 107,246 + +0.0 107,247 - -0.4 107,247 - +0.8 107,247 - -0.5 107,247 - -1.7 107,324 + Xcc-8004.118.1 0.15 -0.4 107,324 + Xcc-8004.118.1 0.15 +1.1 107,324 + Xcc-8004.118.1 0.15 +0.3 107,324 + Xcc-8004.118.1 0.15 -0.7 107,325 - Xcc-8004.118.1 0.16 -0.8 107,882 + Xcc-8004.118.1 0.78 -1.6 107,882 + Xcc-8004.118.1 0.78 +0.5 107,883 - Xcc-8004.118.1 0.78 +0.3 107,924 + Xcc-8004.118.1 0.82 +0.3 107,925 - Xcc-8004.118.1 0.82 +0.5
Or see this region's nucleotide sequence