Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1003.1

Experiment: R2A with Vogels_fungal_media 0.8X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1002.1 and Xcc-8004.1003.1 are separated by 14 nucleotidesXcc-8004.1003.1 and Xcc-8004.1004.1 are separated by 11 nucleotidesXcc-8004.1004.1 and Xcc-8004.1005.1 are separated by 204 nucleotides Xcc-8004.1002.1: Xcc-8004.1002.1 - FIG01095481: hypothetical protein, at 947,894 to 949,417 Xcc-8004.1002.1 Xcc-8004.1003.1: Xcc-8004.1003.1 - FIG027190: Putative transmembrane protein, at 949,432 to 949,992 Xcc-8004.1003.1 Xcc-8004.1004.1: Xcc-8004.1004.1 - hypothetical protein, at 950,004 to 950,120 Xcc-8004.1004.1 Xcc-8004.1005.1: Xcc-8004.1005.1 - FIG01210629: hypothetical protein, at 950,325 to 951,224 Xcc-8004.1005.1 Position (kb) 949 950Strain fitness (log2 ratio) -3 -2 -1 0 1at 948.615 kb on + strand, within Xcc-8004.1002.1at 948.693 kb on + strand, within Xcc-8004.1002.1at 948.693 kb on + strand, within Xcc-8004.1002.1at 948.694 kb on - strand, within Xcc-8004.1002.1at 948.765 kb on + strand, within Xcc-8004.1002.1at 948.765 kb on + strand, within Xcc-8004.1002.1at 948.765 kb on + strand, within Xcc-8004.1002.1at 948.766 kb on - strand, within Xcc-8004.1002.1at 948.766 kb on - strand, within Xcc-8004.1002.1at 948.978 kb on + strand, within Xcc-8004.1002.1at 949.109 kb on + strand, within Xcc-8004.1002.1at 949.109 kb on + strand, within Xcc-8004.1002.1at 949.110 kb on - strand, within Xcc-8004.1002.1at 949.110 kb on - strand, within Xcc-8004.1002.1at 949.110 kb on - strand, within Xcc-8004.1002.1at 949.331 kb on - strandat 949.411 kb on + strandat 949.685 kb on - strand, within Xcc-8004.1003.1at 949.777 kb on + strand, within Xcc-8004.1003.1at 950.155 kb on + strandat 950.155 kb on + strandat 950.156 kb on - strandat 950.156 kb on - strandat 950.379 kb on + strandat 950.380 kb on - strandat 950.380 kb on - strandat 950.380 kb on - strandat 950.383 kb on + strandat 950.383 kb on + strandat 950.383 kb on + strandat 950.384 kb on - strandat 950.393 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
remove
948,615 + Xcc-8004.1002.1 0.47 +0.5
948,693 + Xcc-8004.1002.1 0.52 -0.5
948,693 + Xcc-8004.1002.1 0.52 -0.8
948,694 - Xcc-8004.1002.1 0.52 +0.6
948,765 + Xcc-8004.1002.1 0.57 -0.8
948,765 + Xcc-8004.1002.1 0.57 +0.8
948,765 + Xcc-8004.1002.1 0.57 +0.0
948,766 - Xcc-8004.1002.1 0.57 -0.5
948,766 - Xcc-8004.1002.1 0.57 -1.5
948,978 + Xcc-8004.1002.1 0.71 -0.4
949,109 + Xcc-8004.1002.1 0.80 -0.2
949,109 + Xcc-8004.1002.1 0.80 +0.9
949,110 - Xcc-8004.1002.1 0.80 +0.5
949,110 - Xcc-8004.1002.1 0.80 +0.3
949,110 - Xcc-8004.1002.1 0.80 +0.1
949,331 - +0.3
949,411 + +0.1
949,685 - Xcc-8004.1003.1 0.45 -0.5
949,777 + Xcc-8004.1003.1 0.61 -0.7
950,155 + +0.2
950,155 + +0.1
950,156 - +0.3
950,156 - +0.7
950,379 + +0.5
950,380 - -0.1
950,380 - +0.5
950,380 - -2.8
950,383 + -1.1
950,383 + -1.4
950,383 + -0.8
950,384 - -0.3
950,393 - +0.3

Or see this region's nucleotide sequence