Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS24560 and RS_RS24565 are separated by 157 nucleotides RS_RS24565 and RS_RS24570 are separated by 141 nucleotides RS_RS24570 and RS_RS24575 are separated by 97 nucleotides RS_RS24575 and RS_RS24580 are separated by 189 nucleotides
RS_RS24560: RS_RS24560 - DUF1993 domain-containing protein, at 1,949,357 to 1,949,869
_RS24560
RS_RS24565: RS_RS24565 - hypothetical protein, at 1,950,027 to 1,950,356
_RS24565
RS_RS24570: RS_RS24570 - hypothetical protein, at 1,950,498 to 1,951,018
_RS24570
RS_RS24575: RS_RS24575 - hypothetical protein, at 1,951,116 to 1,951,478
_RS24575
RS_RS24580: RS_RS24580 - PDZ domain-containing protein, at 1,951,668 to 1,953,140
_RS24580
Position (kb) 1950
1951
1952 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1949.783 kb on + strand, within RS_RS24560 at 1949.783 kb on + strand, within RS_RS24560 at 1949.850 kb on - strand at 1949.850 kb on - strand at 1950.172 kb on + strand, within RS_RS24565 at 1950.172 kb on + strand, within RS_RS24565 at 1950.172 kb on + strand, within RS_RS24565 at 1950.172 kb on + strand, within RS_RS24565 at 1950.172 kb on + strand, within RS_RS24565 at 1950.172 kb on + strand, within RS_RS24565 at 1950.173 kb on - strand, within RS_RS24565 at 1950.173 kb on - strand, within RS_RS24565 at 1950.173 kb on - strand, within RS_RS24565 at 1950.173 kb on - strand, within RS_RS24565 at 1950.173 kb on - strand, within RS_RS24565 at 1950.202 kb on + strand, within RS_RS24565 at 1950.203 kb on - strand, within RS_RS24565 at 1950.294 kb on + strand, within RS_RS24565 at 1950.295 kb on - strand, within RS_RS24565 at 1950.383 kb on + strand at 1950.383 kb on + strand at 1950.383 kb on + strand at 1950.499 kb on + strand at 1950.499 kb on + strand at 1950.499 kb on + strand at 1950.500 kb on - strand at 1950.500 kb on - strand at 1950.500 kb on - strand at 1950.500 kb on - strand at 1950.661 kb on + strand, within RS_RS24570 at 1950.662 kb on - strand, within RS_RS24570 at 1950.662 kb on - strand, within RS_RS24570 at 1951.041 kb on + strand at 1951.041 kb on + strand at 1951.225 kb on + strand, within RS_RS24575 at 1951.297 kb on + strand, within RS_RS24575 at 1951.298 kb on - strand, within RS_RS24575 at 1951.298 kb on - strand, within RS_RS24575 at 1951.462 kb on + strand at 1951.462 kb on + strand at 1951.510 kb on - strand at 1951.540 kb on + strand at 1951.541 kb on - strand at 1951.541 kb on - strand at 1951.541 kb on - strand at 1951.591 kb on - strand at 1951.952 kb on + strand, within RS_RS24580 at 1951.953 kb on - strand, within RS_RS24580
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems remove 1,949,783 + RS_RS24560 0.83 -0.1 1,949,783 + RS_RS24560 0.83 +0.2 1,949,850 - -0.5 1,949,850 - -0.5 1,950,172 + RS_RS24565 0.44 -1.6 1,950,172 + RS_RS24565 0.44 -0.6 1,950,172 + RS_RS24565 0.44 -0.8 1,950,172 + RS_RS24565 0.44 -0.8 1,950,172 + RS_RS24565 0.44 +1.2 1,950,172 + RS_RS24565 0.44 -0.5 1,950,173 - RS_RS24565 0.44 +2.1 1,950,173 - RS_RS24565 0.44 -0.5 1,950,173 - RS_RS24565 0.44 +1.2 1,950,173 - RS_RS24565 0.44 +1.6 1,950,173 - RS_RS24565 0.44 -3.2 1,950,202 + RS_RS24565 0.53 +0.4 1,950,203 - RS_RS24565 0.53 -1.9 1,950,294 + RS_RS24565 0.81 -1.1 1,950,295 - RS_RS24565 0.81 -1.1 1,950,383 + +1.9 1,950,383 + -0.7 1,950,383 + +0.7 1,950,499 + -0.0 1,950,499 + +1.2 1,950,499 + +0.3 1,950,500 - +2.5 1,950,500 - -1.5 1,950,500 - +1.0 1,950,500 - +0.6 1,950,661 + RS_RS24570 0.31 -3.7 1,950,662 - RS_RS24570 0.31 +1.7 1,950,662 - RS_RS24570 0.31 -0.0 1,951,041 + -0.5 1,951,041 + +2.0 1,951,225 + RS_RS24575 0.30 +1.2 1,951,297 + RS_RS24575 0.50 +0.4 1,951,298 - RS_RS24575 0.50 -0.8 1,951,298 - RS_RS24575 0.50 +1.0 1,951,462 + +1.5 1,951,462 + -1.4 1,951,510 - +2.1 1,951,540 + -1.5 1,951,541 - +1.0 1,951,541 - +1.4 1,951,541 - -0.2 1,951,591 - -0.1 1,951,952 + RS_RS24580 0.19 +1.1 1,951,953 - RS_RS24580 0.19 -0.2
Or see this region's nucleotide sequence