Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS07305

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS07295 and RS_RS07300 are separated by 67 nucleotidesRS_RS07300 and RS_RS07305 are separated by 19 nucleotidesRS_RS07305 and RS_RS07310 overlap by 4 nucleotides RS_RS07295: RS_RS07295 - 7-carboxy-7-deazaguanine synthase, at 1,551,351 to 1,551,989 _RS07295 RS_RS07300: RS_RS07300 - 6-carboxytetrahydropterin synthase QueD, at 1,552,057 to 1,552,533 _RS07300 RS_RS07305: RS_RS07305 - tRNA adenosine(34) deaminase TadA, at 1,552,553 to 1,553,104 _RS07305 RS_RS07310: RS_RS07310 - muramoyltetrapeptide carboxypeptidase, at 1,553,101 to 1,554,027 _RS07310 Position (kb) 1552 1553 1554Strain fitness (log2 ratio) -2 -1 0 1at 1551.841 kb on - strand, within RS_RS07295at 1551.906 kb on - strand, within RS_RS07295at 1552.438 kb on + strand, within RS_RS07300at 1552.474 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
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1,551,841 - RS_RS07295 0.77 -2.4
1,551,906 - RS_RS07295 0.87 -1.6
1,552,438 + RS_RS07300 0.80 -1.9
1,552,474 + -1.9

Or see this region's nucleotide sequence