Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS04595 and RS_RS04600 are separated by 98 nucleotides RS_RS04600 and RS_RS04605 are separated by 66 nucleotides
RS_RS04595: RS_RS04595 - electron transfer flavoprotein subunit alpha, at 975,294 to 976,229
_RS04595
RS_RS04600: RS_RS04600 - acyl-CoA dehydrogenase, at 976,328 to 978,112
_RS04600
RS_RS04605: RS_RS04605 - D-amino acid dehydrogenase small subunit, at 978,179 to 979,468
_RS04605
Position (kb) 976
977
978
979 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 976.308 kb on + strand at 976.334 kb on + strand at 976.334 kb on + strand at 976.334 kb on + strand at 976.335 kb on - strand at 976.335 kb on - strand at 976.335 kb on - strand at 976.335 kb on - strand at 976.769 kb on + strand, within RS_RS04600 at 976.769 kb on + strand, within RS_RS04600 at 976.769 kb on + strand, within RS_RS04600 at 976.769 kb on + strand, within RS_RS04600 at 976.911 kb on - strand, within RS_RS04600 at 977.189 kb on + strand, within RS_RS04600 at 977.189 kb on + strand, within RS_RS04600 at 977.189 kb on + strand, within RS_RS04600 at 977.280 kb on - strand, within RS_RS04600 at 977.415 kb on - strand, within RS_RS04600 at 977.489 kb on + strand, within RS_RS04600 at 977.610 kb on - strand, within RS_RS04600 at 977.610 kb on - strand, within RS_RS04600 at 977.613 kb on - strand, within RS_RS04600 at 977.639 kb on + strand, within RS_RS04600 at 977.639 kb on + strand, within RS_RS04600 at 977.640 kb on - strand, within RS_RS04600 at 978.226 kb on - strand at 978.579 kb on + strand, within RS_RS04605 at 978.579 kb on + strand, within RS_RS04605 at 978.580 kb on - strand, within RS_RS04605 at 978.660 kb on + strand, within RS_RS04605 at 978.702 kb on + strand, within RS_RS04605 at 978.702 kb on + strand, within RS_RS04605 at 978.702 kb on + strand, within RS_RS04605 at 978.703 kb on - strand, within RS_RS04605
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems remove 976,308 + -1.0 976,334 + -1.3 976,334 + -1.7 976,334 + -0.4 976,335 - +0.1 976,335 - -0.1 976,335 - +0.8 976,335 - +0.4 976,769 + RS_RS04600 0.25 -0.7 976,769 + RS_RS04600 0.25 -1.7 976,769 + RS_RS04600 0.25 -0.7 976,769 + RS_RS04600 0.25 -1.2 976,911 - RS_RS04600 0.33 +0.9 977,189 + RS_RS04600 0.48 +0.6 977,189 + RS_RS04600 0.48 -0.9 977,189 + RS_RS04600 0.48 +0.5 977,280 - RS_RS04600 0.53 -1.1 977,415 - RS_RS04600 0.61 +0.7 977,489 + RS_RS04600 0.65 +0.6 977,610 - RS_RS04600 0.72 -1.0 977,610 - RS_RS04600 0.72 +0.3 977,613 - RS_RS04600 0.72 -0.2 977,639 + RS_RS04600 0.73 +0.5 977,639 + RS_RS04600 0.73 -0.8 977,640 - RS_RS04600 0.74 -2.9 978,226 - -0.9 978,579 + RS_RS04605 0.31 +1.5 978,579 + RS_RS04605 0.31 +0.5 978,580 - RS_RS04605 0.31 +0.5 978,660 + RS_RS04605 0.37 +0.3 978,702 + RS_RS04605 0.41 +2.6 978,702 + RS_RS04605 0.41 +2.8 978,702 + RS_RS04605 0.41 +1.5 978,703 - RS_RS04605 0.41 +1.0
Or see this region's nucleotide sequence