Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02905 and RS_RS02910 are separated by 152 nucleotides RS_RS02910 and RS_RS02915 are separated by 19 nucleotides RS_RS02915 and RS_RS02920 are separated by 362 nucleotides RS_RS02920 and RS_RS02925 overlap by 4 nucleotides
RS_RS02905: RS_RS02905 - lipase, at 623,553 to 624,596
_RS02905
RS_RS02910: RS_RS02910 - phosphoglycolate phosphatase, at 624,749 to 625,450
_RS02910
RS_RS02915: RS_RS02915 - avrd-related protein, at 625,470 to 626,328
_RS02915
RS_RS02920: RS_RS02920 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 626,691 to 627,218
_RS02920
RS_RS02925: RS_RS02925 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 627,215 to 628,759
_RS02925
Position (kb) 625
626
627 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 624.499 kb on - strand at 624.855 kb on + strand, within RS_RS02910 at 624.855 kb on + strand, within RS_RS02910 at 624.855 kb on + strand, within RS_RS02910 at 624.856 kb on - strand, within RS_RS02910 at 624.856 kb on - strand, within RS_RS02910 at 625.164 kb on + strand, within RS_RS02910 at 625.164 kb on + strand, within RS_RS02910 at 625.164 kb on + strand, within RS_RS02910 at 625.165 kb on - strand, within RS_RS02910 at 625.165 kb on - strand, within RS_RS02910 at 625.185 kb on + strand, within RS_RS02910 at 625.185 kb on + strand, within RS_RS02910 at 625.195 kb on + strand, within RS_RS02910 at 625.196 kb on - strand, within RS_RS02910 at 625.196 kb on - strand, within RS_RS02910 at 625.196 kb on - strand, within RS_RS02910 at 625.197 kb on + strand, within RS_RS02910 at 625.198 kb on - strand, within RS_RS02910 at 625.343 kb on - strand, within RS_RS02910 at 625.413 kb on - strand at 625.441 kb on + strand at 625.589 kb on - strand, within RS_RS02915 at 625.688 kb on + strand, within RS_RS02915 at 625.928 kb on + strand, within RS_RS02915 at 625.929 kb on - strand, within RS_RS02915 at 626.877 kb on + strand, within RS_RS02920 at 626.908 kb on + strand, within RS_RS02920 at 626.908 kb on + strand, within RS_RS02920 at 626.909 kb on - strand, within RS_RS02920 at 626.909 kb on - strand, within RS_RS02920 at 626.909 kb on - strand, within RS_RS02920 at 627.192 kb on - strand at 627.234 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems remove 624,499 - +1.3 624,855 + RS_RS02910 0.15 +0.4 624,855 + RS_RS02910 0.15 +0.1 624,855 + RS_RS02910 0.15 -5.1 624,856 - RS_RS02910 0.15 -2.1 624,856 - RS_RS02910 0.15 -0.6 625,164 + RS_RS02910 0.59 -0.1 625,164 + RS_RS02910 0.59 +0.8 625,164 + RS_RS02910 0.59 -1.9 625,165 - RS_RS02910 0.59 +1.9 625,165 - RS_RS02910 0.59 -0.6 625,185 + RS_RS02910 0.62 -0.1 625,185 + RS_RS02910 0.62 +1.7 625,195 + RS_RS02910 0.64 -2.7 625,196 - RS_RS02910 0.64 +0.1 625,196 - RS_RS02910 0.64 +0.4 625,196 - RS_RS02910 0.64 +0.7 625,197 + RS_RS02910 0.64 -1.2 625,198 - RS_RS02910 0.64 +2.3 625,343 - RS_RS02910 0.85 -0.8 625,413 - +0.1 625,441 + -1.9 625,589 - RS_RS02915 0.14 +1.3 625,688 + RS_RS02915 0.25 -0.7 625,928 + RS_RS02915 0.53 -1.6 625,929 - RS_RS02915 0.53 +0.8 626,877 + RS_RS02920 0.35 -0.5 626,908 + RS_RS02920 0.41 -0.0 626,908 + RS_RS02920 0.41 +1.3 626,909 - RS_RS02920 0.41 +1.5 626,909 - RS_RS02920 0.41 +1.3 626,909 - RS_RS02920 0.41 -3.7 627,192 - +0.8 627,234 + -0.3
Or see this region's nucleotide sequence