Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02750 and RS_RS02755 overlap by 8 nucleotides RS_RS02755 and RS_RS02760 are separated by 276 nucleotides RS_RS02760 and RS_RS02765 are separated by 94 nucleotides RS_RS02765 and RS_RS02770 are separated by 274 nucleotides
RS_RS02750: RS_RS02750 - sensor histidine kinase, at 593,668 to 595,209
_RS02750
RS_RS02755: RS_RS02755 - DNA-binding response regulator, at 595,202 to 595,900
_RS02755
RS_RS02760: RS_RS02760 - DNA recombination/repair protein RecA, at 596,177 to 597,235
_RS02760
RS_RS02765: RS_RS02765 - regulatory protein RecX, at 597,330 to 597,809
_RS02765
RS_RS02770: RS_RS02770 - DUF2889 domain-containing protein, at 598,084 to 598,710
_RS02770
Position (kb) 596
597
598 Strain fitness (log2 ratio) -2
-1
0
1
2 at 595.315 kb on - strand, within RS_RS02755 at 595.315 kb on - strand, within RS_RS02755 at 595.315 kb on - strand, within RS_RS02755 at 595.315 kb on - strand, within RS_RS02755 at 595.600 kb on - strand, within RS_RS02755 at 595.600 kb on - strand, within RS_RS02755 at 595.600 kb on - strand, within RS_RS02755 at 595.600 kb on - strand, within RS_RS02755 at 595.759 kb on - strand, within RS_RS02755 at 595.977 kb on - strand at 596.052 kb on - strand at 596.149 kb on + strand at 596.150 kb on - strand at 596.151 kb on + strand at 596.507 kb on + strand, within RS_RS02760 at 597.378 kb on + strand, within RS_RS02765 at 597.948 kb on + strand at 597.948 kb on + strand at 598.148 kb on - strand, within RS_RS02770 at 598.232 kb on + strand, within RS_RS02770 at 598.232 kb on + strand, within RS_RS02770 at 598.232 kb on + strand, within RS_RS02770
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems remove 595,315 - RS_RS02755 0.16 +0.2 595,315 - RS_RS02755 0.16 -0.4 595,315 - RS_RS02755 0.16 -0.8 595,315 - RS_RS02755 0.16 -1.8 595,600 - RS_RS02755 0.57 +0.6 595,600 - RS_RS02755 0.57 +2.1 595,600 - RS_RS02755 0.57 +0.6 595,600 - RS_RS02755 0.57 -1.1 595,759 - RS_RS02755 0.80 +1.1 595,977 - +1.2 596,052 - -0.3 596,149 + +0.0 596,150 - +0.7 596,151 + +1.7 596,507 + RS_RS02760 0.31 +0.7 597,378 + RS_RS02765 0.10 +0.2 597,948 + -0.7 597,948 + -0.1 598,148 - RS_RS02770 0.10 -1.3 598,232 + RS_RS02770 0.24 -0.7 598,232 + RS_RS02770 0.24 +1.9 598,232 + RS_RS02770 0.24 +2.4
Or see this region's nucleotide sequence