Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00630 and RS_RS00635 are separated by 141 nucleotides RS_RS00635 and RS_RS00640 are separated by 13 nucleotides RS_RS00640 and RS_RS00645 are separated by 253 nucleotides
RS_RS00630: RS_RS00630 - Lrp/AsnC family transcriptional regulator, at 150,207 to 150,665
_RS00630
RS_RS00635: RS_RS00635 - glutathione S-transferase, at 150,807 to 151,415
_RS00635
RS_RS00640: RS_RS00640 - HPP family protein, at 151,429 to 152,565
_RS00640
RS_RS00645: RS_RS00645 - phosphatase PAP2 family protein, at 152,819 to 154,792
_RS00645
Position (kb) 151
152
153 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 150.654 kb on - strand at 150.721 kb on + strand at 150.721 kb on + strand at 150.721 kb on + strand at 150.721 kb on + strand at 150.721 kb on + strand at 150.722 kb on - strand at 150.722 kb on - strand at 150.722 kb on - strand at 150.722 kb on - strand at 150.753 kb on + strand at 150.754 kb on - strand at 150.754 kb on - strand at 150.758 kb on + strand at 150.758 kb on + strand at 150.759 kb on - strand at 150.837 kb on + strand at 150.837 kb on + strand at 150.837 kb on + strand at 151.129 kb on - strand, within RS_RS00635 at 151.130 kb on - strand, within RS_RS00635 at 151.344 kb on + strand, within RS_RS00635 at 151.463 kb on + strand at 151.463 kb on + strand at 151.883 kb on + strand, within RS_RS00640 at 152.067 kb on - strand, within RS_RS00640 at 152.067 kb on - strand, within RS_RS00640 at 152.433 kb on - strand, within RS_RS00640 at 152.561 kb on + strand at 152.562 kb on - strand at 152.617 kb on + strand at 152.618 kb on - strand at 152.771 kb on - strand at 152.771 kb on - strand at 153.053 kb on + strand, within RS_RS00645 at 153.266 kb on + strand, within RS_RS00645 at 153.266 kb on + strand, within RS_RS00645 at 153.267 kb on - strand, within RS_RS00645 at 153.267 kb on - strand, within RS_RS00645 at 153.267 kb on - strand, within RS_RS00645 at 153.267 kb on - strand, within RS_RS00645 at 153.317 kb on + strand, within RS_RS00645 at 153.344 kb on + strand, within RS_RS00645 at 153.344 kb on + strand, within RS_RS00645 at 153.345 kb on - strand, within RS_RS00645 at 153.412 kb on + strand, within RS_RS00645 at 153.412 kb on + strand, within RS_RS00645 at 153.413 kb on - strand, within RS_RS00645 at 153.449 kb on + strand, within RS_RS00645 at 153.449 kb on + strand, within RS_RS00645 at 153.449 kb on + strand, within RS_RS00645 at 153.449 kb on + strand, within RS_RS00645
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems remove 150,654 - +2.2 150,721 + -0.1 150,721 + -2.4 150,721 + +0.7 150,721 + +0.1 150,721 + +1.3 150,722 - -2.9 150,722 - -0.0 150,722 - -0.9 150,722 - -1.3 150,753 + +1.6 150,754 - -1.8 150,754 - +0.8 150,758 + -1.9 150,758 + -0.1 150,759 - -0.6 150,837 + +0.3 150,837 + +0.5 150,837 + -0.1 151,129 - RS_RS00635 0.53 +1.3 151,130 - RS_RS00635 0.53 -0.3 151,344 + RS_RS00635 0.88 +0.5 151,463 + +0.3 151,463 + +0.1 151,883 + RS_RS00640 0.40 -0.8 152,067 - RS_RS00640 0.56 +0.1 152,067 - RS_RS00640 0.56 -0.6 152,433 - RS_RS00640 0.88 -0.7 152,561 + -1.7 152,562 - +0.4 152,617 + +1.1 152,618 - +1.8 152,771 - -0.4 152,771 - -0.7 153,053 + RS_RS00645 0.12 +0.7 153,266 + RS_RS00645 0.23 -0.4 153,266 + RS_RS00645 0.23 +1.0 153,267 - RS_RS00645 0.23 -2.4 153,267 - RS_RS00645 0.23 -0.2 153,267 - RS_RS00645 0.23 +2.5 153,267 - RS_RS00645 0.23 +0.6 153,317 + RS_RS00645 0.25 -1.7 153,344 + RS_RS00645 0.27 -1.6 153,344 + RS_RS00645 0.27 -0.5 153,345 - RS_RS00645 0.27 -0.1 153,412 + RS_RS00645 0.30 -0.8 153,412 + RS_RS00645 0.30 +1.3 153,413 - RS_RS00645 0.30 -0.5 153,449 + RS_RS00645 0.32 -0.1 153,449 + RS_RS00645 0.32 -0.0 153,449 + RS_RS00645 0.32 +1.8 153,449 + RS_RS00645 0.32 +1.3
Or see this region's nucleotide sequence