Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS00250

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS00245 and RS_RS00250 are separated by 12 nucleotidesRS_RS00250 and RS_RS00255 are separated by 146 nucleotides RS_RS00245: RS_RS00245 - 6-phosphogluconolactonase, at 53,181 to 54,437 _RS00245 RS_RS00250: RS_RS00250 - FAD-binding oxidoreductase, at 54,450 to 55,976 _RS00250 RS_RS00255: RS_RS00255 - class I SAM-dependent rRNA methyltransferase, at 56,123 to 57,316 _RS00255 Position (kb) 54 55 56Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 53.467 kb on + strand, within RS_RS00245at 53.467 kb on + strand, within RS_RS00245at 53.467 kb on + strand, within RS_RS00245at 53.467 kb on + strand, within RS_RS00245at 53.468 kb on - strand, within RS_RS00245at 53.468 kb on - strand, within RS_RS00245at 53.468 kb on - strand, within RS_RS00245at 53.468 kb on - strand, within RS_RS00245at 53.524 kb on + strand, within RS_RS00245at 53.525 kb on - strand, within RS_RS00245at 53.629 kb on + strand, within RS_RS00245at 53.629 kb on + strand, within RS_RS00245at 53.629 kb on + strand, within RS_RS00245at 53.630 kb on - strand, within RS_RS00245at 53.630 kb on - strand, within RS_RS00245at 53.630 kb on - strand, within RS_RS00245at 53.911 kb on + strand, within RS_RS00245at 53.911 kb on + strand, within RS_RS00245at 53.911 kb on + strand, within RS_RS00245at 53.912 kb on - strand, within RS_RS00245at 53.926 kb on + strand, within RS_RS00245at 53.926 kb on + strand, within RS_RS00245at 54.049 kb on + strand, within RS_RS00245at 54.049 kb on + strand, within RS_RS00245at 54.050 kb on - strand, within RS_RS00245at 54.083 kb on - strand, within RS_RS00245at 54.083 kb on - strand, within RS_RS00245at 54.083 kb on - strand, within RS_RS00245at 54.106 kb on + strand, within RS_RS00245at 54.107 kb on - strand, within RS_RS00245at 54.205 kb on + strand, within RS_RS00245at 54.205 kb on + strand, within RS_RS00245at 54.205 kb on + strand, within RS_RS00245at 54.259 kb on + strand, within RS_RS00245at 54.259 kb on + strand, within RS_RS00245at 54.260 kb on - strand, within RS_RS00245at 54.260 kb on - strand, within RS_RS00245at 54.271 kb on + strand, within RS_RS00245at 54.272 kb on - strand, within RS_RS00245at 54.496 kb on + strandat 54.497 kb on - strandat 54.526 kb on + strandat 54.526 kb on + strandat 54.526 kb on + strandat 54.526 kb on + strandat 54.527 kb on - strandat 54.527 kb on - strandat 54.545 kb on - strandat 54.547 kb on + strandat 54.547 kb on + strandat 54.547 kb on + strandat 54.548 kb on - strandat 54.548 kb on - strandat 54.548 kb on - strandat 54.548 kb on - strandat 54.548 kb on - strandat 54.568 kb on + strandat 54.592 kb on + strandat 54.601 kb on + strandat 54.601 kb on + strandat 54.601 kb on + strandat 54.601 kb on + strandat 54.602 kb on - strandat 54.670 kb on + strand, within RS_RS00250at 54.736 kb on + strand, within RS_RS00250at 54.736 kb on + strand, within RS_RS00250at 54.737 kb on - strand, within RS_RS00250at 54.823 kb on + strand, within RS_RS00250at 54.824 kb on - strand, within RS_RS00250at 54.889 kb on + strand, within RS_RS00250at 54.889 kb on + strand, within RS_RS00250at 54.889 kb on + strand, within RS_RS00250at 54.890 kb on - strand, within RS_RS00250at 54.931 kb on + strand, within RS_RS00250at 54.931 kb on + strand, within RS_RS00250at 54.931 kb on + strand, within RS_RS00250at 54.932 kb on - strand, within RS_RS00250at 54.943 kb on + strand, within RS_RS00250at 54.944 kb on - strand, within RS_RS00250at 54.944 kb on - strand, within RS_RS00250at 54.944 kb on - strand, within RS_RS00250at 54.944 kb on - strand, within RS_RS00250at 55.004 kb on - strand, within RS_RS00250at 55.273 kb on + strand, within RS_RS00250at 55.273 kb on + strand, within RS_RS00250at 55.388 kb on + strand, within RS_RS00250at 55.388 kb on + strand, within RS_RS00250at 55.388 kb on + strand, within RS_RS00250at 55.388 kb on + strand, within RS_RS00250at 55.389 kb on - strand, within RS_RS00250at 55.390 kb on + strand, within RS_RS00250at 55.390 kb on + strand, within RS_RS00250at 55.390 kb on + strand, within RS_RS00250at 55.391 kb on - strand, within RS_RS00250at 55.391 kb on - strand, within RS_RS00250at 55.391 kb on - strand, within RS_RS00250at 55.606 kb on + strand, within RS_RS00250at 55.645 kb on + strand, within RS_RS00250at 55.645 kb on + strand, within RS_RS00250at 55.646 kb on - strand, within RS_RS00250at 56.068 kb on + strandat 56.301 kb on + strand, within RS_RS00255at 56.301 kb on + strand, within RS_RS00255at 56.301 kb on + strand, within RS_RS00255at 56.302 kb on - strand, within RS_RS00255at 56.302 kb on - strand, within RS_RS00255at 56.302 kb on - strand, within RS_RS00255at 56.302 kb on - strand, within RS_RS00255at 56.361 kb on + strand, within RS_RS00255at 56.361 kb on + strand, within RS_RS00255at 56.361 kb on + strand, within RS_RS00255at 56.362 kb on - strand, within RS_RS00255at 56.625 kb on + strand, within RS_RS00255at 56.625 kb on + strand, within RS_RS00255at 56.626 kb on - strand, within RS_RS00255at 56.700 kb on + strand, within RS_RS00255at 56.701 kb on - strand, within RS_RS00255at 56.736 kb on + strand, within RS_RS00255at 56.736 kb on + strand, within RS_RS00255at 56.736 kb on + strand, within RS_RS00255at 56.736 kb on + strand, within RS_RS00255at 56.736 kb on + strand, within RS_RS00255at 56.737 kb on - strand, within RS_RS00255at 56.737 kb on - strand, within RS_RS00255at 56.737 kb on - strand, within RS_RS00255at 56.737 kb on - strand, within RS_RS00255at 56.739 kb on + strand, within RS_RS00255at 56.739 kb on + strand, within RS_RS00255at 56.740 kb on - strand, within RS_RS00255at 56.854 kb on - strand, within RS_RS00255at 56.854 kb on - strand, within RS_RS00255

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
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53,467 + RS_RS00245 0.23 +0.7
53,467 + RS_RS00245 0.23 +0.1
53,467 + RS_RS00245 0.23 +0.5
53,467 + RS_RS00245 0.23 -1.0
53,468 - RS_RS00245 0.23 -0.5
53,468 - RS_RS00245 0.23 +1.2
53,468 - RS_RS00245 0.23 +1.6
53,468 - RS_RS00245 0.23 -2.3
53,524 + RS_RS00245 0.27 -0.4
53,525 - RS_RS00245 0.27 -2.4
53,629 + RS_RS00245 0.36 +1.2
53,629 + RS_RS00245 0.36 -0.0
53,629 + RS_RS00245 0.36 -4.4
53,630 - RS_RS00245 0.36 +0.5
53,630 - RS_RS00245 0.36 +1.8
53,630 - RS_RS00245 0.36 -0.4
53,911 + RS_RS00245 0.58 -1.7
53,911 + RS_RS00245 0.58 +0.0
53,911 + RS_RS00245 0.58 +0.3
53,912 - RS_RS00245 0.58 -0.0
53,926 + RS_RS00245 0.59 +0.7
53,926 + RS_RS00245 0.59 -0.0
54,049 + RS_RS00245 0.69 +0.2
54,049 + RS_RS00245 0.69 -1.5
54,050 - RS_RS00245 0.69 +1.7
54,083 - RS_RS00245 0.72 -0.0
54,083 - RS_RS00245 0.72 +1.5
54,083 - RS_RS00245 0.72 +0.7
54,106 + RS_RS00245 0.74 +0.7
54,107 - RS_RS00245 0.74 +1.0
54,205 + RS_RS00245 0.81 -2.8
54,205 + RS_RS00245 0.81 -0.3
54,205 + RS_RS00245 0.81 -0.4
54,259 + RS_RS00245 0.86 -1.3
54,259 + RS_RS00245 0.86 +1.8
54,260 - RS_RS00245 0.86 +0.6
54,260 - RS_RS00245 0.86 -0.5
54,271 + RS_RS00245 0.87 -0.3
54,272 - RS_RS00245 0.87 +0.8
54,496 + +2.0
54,497 - +0.4
54,526 + +0.0
54,526 + -0.6
54,526 + -1.4
54,526 + +0.2
54,527 - -3.6
54,527 - +2.3
54,545 - -0.1
54,547 + -0.6
54,547 + -3.3
54,547 + -0.3
54,548 - +0.3
54,548 - +0.6
54,548 - +0.2
54,548 - -1.9
54,548 - -0.4
54,568 + -0.7
54,592 + -1.6
54,601 + +1.6
54,601 + -0.5
54,601 + -0.1
54,601 + -0.1
54,602 - +0.3
54,670 + RS_RS00250 0.14 -0.1
54,736 + RS_RS00250 0.19 +1.7
54,736 + RS_RS00250 0.19 -1.3
54,737 - RS_RS00250 0.19 +0.1
54,823 + RS_RS00250 0.24 -1.5
54,824 - RS_RS00250 0.24 -0.9
54,889 + RS_RS00250 0.29 +3.2
54,889 + RS_RS00250 0.29 +1.3
54,889 + RS_RS00250 0.29 -0.1
54,890 - RS_RS00250 0.29 -2.5
54,931 + RS_RS00250 0.31 -0.0
54,931 + RS_RS00250 0.31 +0.5
54,931 + RS_RS00250 0.31 +0.6
54,932 - RS_RS00250 0.32 -0.4
54,943 + RS_RS00250 0.32 -0.4
54,944 - RS_RS00250 0.32 -0.4
54,944 - RS_RS00250 0.32 -2.2
54,944 - RS_RS00250 0.32 +0.1
54,944 - RS_RS00250 0.32 -1.2
55,004 - RS_RS00250 0.36 -0.4
55,273 + RS_RS00250 0.54 +0.2
55,273 + RS_RS00250 0.54 +0.2
55,388 + RS_RS00250 0.61 +0.2
55,388 + RS_RS00250 0.61 -0.8
55,388 + RS_RS00250 0.61 -1.6
55,388 + RS_RS00250 0.61 +1.0
55,389 - RS_RS00250 0.61 +0.9
55,390 + RS_RS00250 0.62 -4.1
55,390 + RS_RS00250 0.62 +1.9
55,390 + RS_RS00250 0.62 -3.4
55,391 - RS_RS00250 0.62 +0.7
55,391 - RS_RS00250 0.62 +1.1
55,391 - RS_RS00250 0.62 -1.7
55,606 + RS_RS00250 0.76 -0.9
55,645 + RS_RS00250 0.78 +0.9
55,645 + RS_RS00250 0.78 +0.4
55,646 - RS_RS00250 0.78 +0.9
56,068 + -1.8
56,301 + RS_RS00255 0.15 +1.0
56,301 + RS_RS00255 0.15 +0.6
56,301 + RS_RS00255 0.15 +1.2
56,302 - RS_RS00255 0.15 +0.4
56,302 - RS_RS00255 0.15 -1.6
56,302 - RS_RS00255 0.15 -0.0
56,302 - RS_RS00255 0.15 -1.8
56,361 + RS_RS00255 0.20 +0.0
56,361 + RS_RS00255 0.20 +0.6
56,361 + RS_RS00255 0.20 +0.4
56,362 - RS_RS00255 0.20 -0.8
56,625 + RS_RS00255 0.42 -1.1
56,625 + RS_RS00255 0.42 +1.1
56,626 - RS_RS00255 0.42 -1.2
56,700 + RS_RS00255 0.48 -0.3
56,701 - RS_RS00255 0.48 -0.1
56,736 + RS_RS00255 0.51 -0.1
56,736 + RS_RS00255 0.51 +0.1
56,736 + RS_RS00255 0.51 -0.1
56,736 + RS_RS00255 0.51 -0.2
56,736 + RS_RS00255 0.51 +0.9
56,737 - RS_RS00255 0.51 -0.7
56,737 - RS_RS00255 0.51 -0.1
56,737 - RS_RS00255 0.51 +0.1
56,737 - RS_RS00255 0.51 +0.7
56,739 + RS_RS00255 0.52 -2.0
56,739 + RS_RS00255 0.52 -0.6
56,740 - RS_RS00255 0.52 -0.2
56,854 - RS_RS00255 0.61 +1.9
56,854 - RS_RS00255 0.61 +0.0

Or see this region's nucleotide sequence