Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS27910

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
6,213,057	+		PFLU_RS27905	0.20	-0.5
6,213,057	+		PFLU_RS27905	0.20	+0.8
6,213,057	+		PFLU_RS27905	0.20	-1.2
6,213,058	-		PFLU_RS27905	0.21	-0.7
6,213,058	-		PFLU_RS27905	0.21	-1.0
6,213,058	-		PFLU_RS27905	0.21	-1.7
6,213,058	-		PFLU_RS27905	0.21	+0.7
6,213,222	+		PFLU_RS27905	0.34	-0.8
6,213,252	+		PFLU_RS27905	0.36	+0.3
6,213,252	+		PFLU_RS27905	0.36	+0.7
6,213,252	+		PFLU_RS27905	0.36	-0.4
6,213,277	+		PFLU_RS27905	0.38	+2.2
6,213,277	+		PFLU_RS27905	0.38	-0.7
6,213,277	+		PFLU_RS27905	0.38	+0.3
6,213,278	-		PFLU_RS27905	0.38	-0.8
6,213,278	-		PFLU_RS27905	0.38	-1.7
6,213,278	-		PFLU_RS27905	0.38	-2.1
6,213,278	-		PFLU_RS27905	0.38	+0.2
6,213,332	+		PFLU_RS27905	0.43	+0.9
6,213,333	-		PFLU_RS27905	0.43	+0.5
6,213,333	-		PFLU_RS27905	0.43	-1.7
6,213,350	+		PFLU_RS27905	0.44	+1.8
6,213,351	-		PFLU_RS27905	0.44	-0.1
6,213,408	+		PFLU_RS27905	0.49	-2.1
6,213,409	-		PFLU_RS27905	0.49	-0.6
6,213,409	-		PFLU_RS27905	0.49	+0.2
6,213,477	+		PFLU_RS27905	0.54	+0.5
6,213,477	+		PFLU_RS27905	0.54	+0.7
6,213,478	-		PFLU_RS27905	0.54	-0.4
6,213,478	-		PFLU_RS27905	0.54	-0.4
6,213,620	+		PFLU_RS27905	0.66	-0.5
6,213,620	+		PFLU_RS27905	0.66	-1.7
6,213,620	+		PFLU_RS27905	0.66	-0.8
6,213,621	-		PFLU_RS27905	0.66	+0.5
6,213,621	-		PFLU_RS27905	0.66	+0.7
6,213,621	-		PFLU_RS27905	0.66	+1.8
6,213,621	-		PFLU_RS27905	0.66	+0.5
6,213,621	-		PFLU_RS27905	0.66	-0.9
6,213,621	-		PFLU_RS27905	0.66	+0.4
6,213,621	-		PFLU_RS27905	0.66	-1.1
6,213,694	+		PFLU_RS27905	0.72	-0.3
6,213,694	+		PFLU_RS27905	0.72	-0.7
6,213,694	+		PFLU_RS27905	0.72	-0.8
6,213,695	-		PFLU_RS27905	0.72	-0.1
6,213,695	-		PFLU_RS27905	0.72	-1.3
6,213,695	-		PFLU_RS27905	0.72	-0.7
6,213,696	+		PFLU_RS27905	0.72	+0.3
6,213,696	+		PFLU_RS27905	0.72	-0.2
6,213,696	+		PFLU_RS27905	0.72	-0.7
6,213,696	+		PFLU_RS27905	0.72	-0.2
6,213,696	+		PFLU_RS27905	0.72	-1.6
6,213,697	-		PFLU_RS27905	0.72	+0.3
6,213,697	-		PFLU_RS27905	0.72	-1.5
6,213,697	-		PFLU_RS27905	0.72	+0.3
6,213,727	+		PFLU_RS27905	0.74	-0.5
6,213,727	+		PFLU_RS27905	0.74	-0.2
6,213,728	-		PFLU_RS27905	0.75	-0.7
6,213,728	-		PFLU_RS27905	0.75	+0.6
6,213,729	+		PFLU_RS27905	0.75	+1.2
6,213,729	+		PFLU_RS27905	0.75	+0.4
6,213,729	+		PFLU_RS27905	0.75	+1.0
6,213,729	+		PFLU_RS27905	0.75	+1.5
6,213,729	+		PFLU_RS27905	0.75	+0.1
6,213,729	+		PFLU_RS27905	0.75	+1.1
6,213,729	+		PFLU_RS27905	0.75	-0.9
6,213,729	+		PFLU_RS27905	0.75	+0.1
6,213,729	+		PFLU_RS27905	0.75	-1.5
6,213,729	+		PFLU_RS27905	0.75	+0.9
6,213,729	+		PFLU_RS27905	0.75	+0.4
6,213,729	+		PFLU_RS27905	0.75	-0.1
6,213,729	+		PFLU_RS27905	0.75	-1.5
6,213,729	+		PFLU_RS27905	0.75	-3.5
6,213,729	+		PFLU_RS27905	0.75	+1.1
6,213,729	+		PFLU_RS27905	0.75	+1.3
6,213,729	+		PFLU_RS27905	0.75	+0.8
6,213,729	+		PFLU_RS27905	0.75	+0.7
6,213,729	+		PFLU_RS27905	0.75	+1.4
6,213,729	+		PFLU_RS27905	0.75	-0.4
6,213,729	+		PFLU_RS27905	0.75	-1.2
6,213,729	+		PFLU_RS27905	0.75	+0.6
6,213,730	-		PFLU_RS27905	0.75	-0.3
6,213,730	-		PFLU_RS27905	0.75	+0.7
6,213,730	-		PFLU_RS27905	0.75	+0.1
6,213,730	-		PFLU_RS27905	0.75	-0.9
6,213,730	-		PFLU_RS27905	0.75	+0.3
6,213,730	-		PFLU_RS27905	0.75	+0.1
6,213,730	-		PFLU_RS27905	0.75	+0.7
6,213,730	-		PFLU_RS27905	0.75	-2.7
6,213,730	-		PFLU_RS27905	0.75	-0.0
6,213,730	-		PFLU_RS27905	0.75	+0.0
6,213,730	-		PFLU_RS27905	0.75	-2.0
6,213,730	-		PFLU_RS27905	0.75	-0.5
6,213,730	-		PFLU_RS27905	0.75	+1.0
6,213,730	-		PFLU_RS27905	0.75	+1.1
6,213,730	-		PFLU_RS27905	0.75	-0.2
6,213,730	-		PFLU_RS27905	0.75	-1.7
6,213,730	-		PFLU_RS27905	0.75	-0.5
6,213,906	+		PFLU_RS27905	0.89	-1.7
6,213,906	+		PFLU_RS27905	0.89	+0.7
6,213,906	+		PFLU_RS27905	0.89	-0.6
6,213,906	+		PFLU_RS27905	0.89	-0.2
6,213,906	+		PFLU_RS27905	0.89	+0.4
6,213,906	+		PFLU_RS27905	0.89	-3.5
6,213,906	+		PFLU_RS27905	0.89	+0.3
6,213,906	+		PFLU_RS27905	0.89	+0.9
6,213,906	+		PFLU_RS27905	0.89	-1.2
6,213,906	+		PFLU_RS27905	0.89	-0.8
6,213,906	+		PFLU_RS27905	0.89	+1.0
6,213,906	+		PFLU_RS27905	0.89	+0.8
6,213,906	+		PFLU_RS27905	0.89	-1.8
6,213,906	+		PFLU_RS27905	0.89	-0.6
6,213,907	-		PFLU_RS27905	0.89	-0.4
6,213,907	-		PFLU_RS27905	0.89	+0.6
6,213,907	-		PFLU_RS27905	0.89	+0.1
6,213,907	-		PFLU_RS27905	0.89	-0.9
6,213,907	-		PFLU_RS27905	0.89	-1.2
6,213,907	-		PFLU_RS27905	0.89	+0.3
6,213,951	+				+1.3
6,213,951	+				+0.5
6,213,952	-				+0.7
6,213,952	-				+1.5
6,213,960	+				+1.1
6,213,960	+				-0.4
6,213,960	+				+0.8
6,213,961	-				-0.3
6,213,961	-				-0.8
6,214,015	+				-0.4
6,214,015	+				-0.7
6,214,015	+				+0.6
6,214,015	+				-0.8
6,214,015	+				+0.4
6,214,015	+				+2.1
6,214,015	+				+1.9
6,214,015	+				-0.2
6,214,015	+				-1.1
6,214,015	+				+0.5
6,214,015	+				-0.6
6,214,015	+				+1.8
6,214,016	-				-2.0
6,214,016	-				+0.4
6,214,016	-				+0.3
6,214,016	-				-0.1
6,214,016	-				+0.9
6,214,016	-				+0.4
6,214,016	-				-0.8
6,214,157	-		PFLU_RS27910	0.40	-1.6
6,214,157	-		PFLU_RS27910	0.40	-0.7
6,214,314	-				-0.5
6,214,314	-				-0.7
6,214,314	-				-2.7
6,214,320	+				-0.1
6,214,321	-				-1.5
6,214,357	+				-0.2
6,214,357	+				+0.6
6,214,358	-				-0.2
6,214,358	-				-0.4
6,214,366	+				+0.2
6,214,366	+				+0.1
6,214,366	+				-0.9
6,214,367	-				-0.9
6,214,419	-				-0.2
6,214,434	+				+0.2
6,214,435	-				+0.2
6,214,456	+				+0.3
6,214,466	+				+0.8
6,214,547	+				+0.2
6,214,547	+				+0.8
6,214,548	-				-0.7
6,214,815	+		PFLU_RS27915	0.63	+1.2
6,214,815	+		PFLU_RS27915	0.63	-0.7
6,214,815	+		PFLU_RS27915	0.63	-0.4
6,214,816	-		PFLU_RS27915	0.63	-1.1
6,214,816	-		PFLU_RS27915	0.63	-1.7
6,214,816	-		PFLU_RS27915	0.63	-0.6
6,214,816	-		PFLU_RS27915	0.63	-0.4
6,214,919	+		PFLU_RS27915	0.88	+0.5
6,214,920	-		PFLU_RS27915	0.88	+0.2
6,214,920	-		PFLU_RS27915	0.88	-0.1
6,214,920	-		PFLU_RS27915	0.88	+1.0
6,214,920	-		PFLU_RS27915	0.88	+0.1
6,214,920	-		PFLU_RS27915	0.88	+0.6
6,214,934	+				-1.1
6,214,934	+				-1.1
6,214,934	+				+0.2
6,214,935	-				-0.1
6,214,935	-				+0.9
6,214,935	-				+2.6
6,214,935	-				-1.6
6,214,935	-				+0.5
6,214,935	-				-1.8
6,214,967	+				-0.0
6,214,968	-				-1.2
6,214,968	-				+0.4
6,214,968	-				+0.7
6,214,979	+				-1.4
6,214,979	+				-0.4
6,214,979	+				+1.2
6,214,979	+				-0.1
6,214,980	-				+0.5
6,214,980	-				+0.7
6,214,980	-				+1.6
6,214,980	-				-0.6
6,214,980	-				+0.3
6,214,980	-				+0.9
6,214,980	-				+0.4
6,214,981	+				+0.9
6,214,981	+				-1.3
6,214,981	+				+0.4
6,214,981	+				-0.2
6,214,981	+				-0.0
6,214,981	+				+0.5
6,214,982	-				+0.3
6,214,982	-				+0.4
6,214,982	-				+0.0
6,214,982	-				+0.8
6,215,018	+				+0.4
6,215,018	+				+0.1
6,215,032	+				-1.1
6,215,032	+				-1.8
6,215,032	+				-1.0
6,215,032	+				+0.5
6,215,032	+				-0.5
6,215,032	+				+0.1
6,215,032	+				-1.2
6,215,032	+				-0.9
6,215,033	-				+0.4
6,215,033	-				+0.6
6,215,033	-				-1.3
6,215,033	-				-2.5
6,215,033	-				+0.4
6,215,033	-				+1.3
6,215,098	+				-0.2
6,215,098	+				-0.7
6,215,098	+				-1.4
6,215,098	+				-0.5
6,215,099	-				+1.3
6,215,099	-				+0.2
6,215,099	-				-0.6
6,215,099	-				+0.9
6,215,099	-				-0.1
6,215,177	+				-0.2
6,215,178	-				+0.9
6,215,237	+		PFLU_RS27920	0.12	-0.8
6,215,237	+		PFLU_RS27920	0.12	-1.7
6,215,238	-		PFLU_RS27920	0.12	+0.9
6,215,238	-		PFLU_RS27920	0.12	+0.8
6,215,238	-		PFLU_RS27920	0.12	-0.7
6,215,238	-		PFLU_RS27920	0.12	-0.2
6,215,238	-		PFLU_RS27920	0.12	+0.2
6,215,238	-		PFLU_RS27920	0.12	-0.3
6,215,238	-		PFLU_RS27920	0.12	-0.4
6,215,238	-		PFLU_RS27920	0.12	-1.4