Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS18550

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
4,196,633	+		PFLU_RS18540	0.43	-0.1
4,196,643	+		PFLU_RS18540	0.44	-0.5
4,196,643	+		PFLU_RS18540	0.44	+0.6
4,196,643	+		PFLU_RS18540	0.44	+0.0
4,196,644	-		PFLU_RS18540	0.45	+0.4
4,196,644	-		PFLU_RS18540	0.45	-1.2
4,196,644	-		PFLU_RS18540	0.45	-0.2
4,196,655	+		PFLU_RS18540	0.46	-0.9
4,196,664	+		PFLU_RS18540	0.47	-1.5
4,196,664	+		PFLU_RS18540	0.47	-1.7
4,196,664	+		PFLU_RS18540	0.47	-0.6
4,196,664	+		PFLU_RS18540	0.47	+0.6
4,196,664	+		PFLU_RS18540	0.47	-1.0
4,196,665	-		PFLU_RS18540	0.48	-0.3
4,196,665	-		PFLU_RS18540	0.48	+0.5
4,196,665	-		PFLU_RS18540	0.48	-1.4
4,196,665	-		PFLU_RS18540	0.48	+0.0
4,196,665	-		PFLU_RS18540	0.48	-2.2
4,196,665	-		PFLU_RS18540	0.48	+0.8
4,196,665	-		PFLU_RS18540	0.48	+0.6
4,196,665	-		PFLU_RS18540	0.48	-2.2
4,196,665	-		PFLU_RS18540	0.48	-1.2
4,196,665	-		PFLU_RS18540	0.48	+0.4
4,196,665	-		PFLU_RS18540	0.48	+0.5
4,196,665	-		PFLU_RS18540	0.48	-0.5
4,196,666	+		PFLU_RS18540	0.48	+1.4
4,196,667	-		PFLU_RS18540	0.48	-1.8
4,196,667	-		PFLU_RS18540	0.48	+0.6
4,196,693	+		PFLU_RS18540	0.52	+0.6
4,196,693	+		PFLU_RS18540	0.52	+0.4
4,196,693	+		PFLU_RS18540	0.52	-0.5
4,196,693	+		PFLU_RS18540	0.52	-1.0
4,196,693	+		PFLU_RS18540	0.52	-0.2
4,196,693	+		PFLU_RS18540	0.52	-0.6
4,196,693	+		PFLU_RS18540	0.52	+0.2
4,196,693	+		PFLU_RS18540	0.52	-1.3
4,196,693	+		PFLU_RS18540	0.52	-2.4
4,196,694	-		PFLU_RS18540	0.52	-0.0
4,196,694	-		PFLU_RS18540	0.52	+0.6
4,196,694	-		PFLU_RS18540	0.52	+0.4
4,196,724	-		PFLU_RS18540	0.56	-0.7
4,196,724	-		PFLU_RS18540	0.56	+0.1
4,196,724	-		PFLU_RS18540	0.56	-2.5
4,196,760	+		PFLU_RS18540	0.61	-0.3
4,196,760	+		PFLU_RS18540	0.61	-1.5
4,196,760	+		PFLU_RS18540	0.61	+0.5
4,196,761	-		PFLU_RS18540	0.61	-2.8
4,196,761	-		PFLU_RS18540	0.61	+2.9
4,196,761	-		PFLU_RS18540	0.61	-0.5
4,196,817	-		PFLU_RS18540	0.69	-1.4
4,196,835	+		PFLU_RS18540	0.72	+1.3
4,196,835	+		PFLU_RS18540	0.72	+0.5
4,196,835	+		PFLU_RS18540	0.72	-0.8
4,196,836	-		PFLU_RS18540	0.72	-0.3
4,196,836	-		PFLU_RS18540	0.72	+0.7
4,196,844	+		PFLU_RS18540	0.73	+0.3
4,196,844	+		PFLU_RS18540	0.73	+1.1
4,196,845	-		PFLU_RS18540	0.73	-1.2
4,196,845	-		PFLU_RS18540	0.73	-0.4
4,196,934	+		PFLU_RS18540	0.86	+0.6
4,196,934	+		PFLU_RS18540	0.86	+0.2
4,196,934	+		PFLU_RS18540	0.86	-2.2
4,196,935	-		PFLU_RS18540	0.86	-0.7
4,196,935	-		PFLU_RS18540	0.86	+0.5
4,196,973	+				-1.5
4,196,973	+				+0.1
4,196,973	+				-2.0
4,196,973	+				-0.6
4,196,973	+				+0.7
4,196,973	+				+0.4
4,196,973	+				-0.2
4,196,973	+				-0.0
4,196,973	+				-1.2
4,196,973	+				-0.4
4,196,974	-				-0.1
4,196,974	-				+1.2
4,196,974	-				-2.2
4,196,974	-				-0.5
4,196,974	-				-1.0
4,196,974	-				-1.6
4,196,974	-				-0.2
4,196,993	+				-1.5
4,196,993	+				+1.4
4,196,993	+				-0.2
4,196,993	+				-0.2
4,196,994	-				+0.1
4,196,994	-				-0.4
4,196,994	-				-2.0
4,197,008	+				-0.1
4,197,009	-				-2.4
4,197,029	+				-0.4
4,197,029	+				+0.6
4,197,029	+				-1.4
4,197,029	+				+0.9
4,197,029	+				-1.0
4,197,029	+				-1.0
4,197,029	+				+0.9
4,197,030	-				-1.0
4,197,030	-				-2.2
4,197,030	-				-0.5
4,197,030	-				-1.1
4,197,030	-				-0.6
4,197,030	-				-0.9
4,197,030	-				-2.0
4,197,030	-				-0.1
4,197,030	-				-1.5
4,197,030	-				-0.0
4,197,030	-				+0.0
4,197,033	+				-1.0
4,197,033	+				-0.4
4,197,033	+				-0.1
4,197,034	-				-1.8
4,197,364	+				-0.1
4,197,365	-				-0.7
4,197,405	+				-1.0
4,197,405	+				-1.8
4,197,405	+				+0.6
4,197,405	+				-0.0
4,197,405	+				-0.6
4,197,406	-				-1.4
4,197,406	-				+0.0
4,197,406	-				+1.2
4,197,406	-				-1.1
4,197,409	+				-0.1
4,197,409	+				-1.5
4,197,409	+				+0.0
4,197,409	+				-2.1
4,197,409	+				-1.1
4,197,409	+				+1.5
4,197,410	-				-1.1
4,197,410	-				+0.3
4,197,443	+				+0.2
4,197,443	+				+0.1
4,197,470	+				+0.9
4,197,470	+				+0.0
4,197,470	+				+0.5
4,197,470	+				-1.6
4,197,470	+				-1.9
4,197,470	+				+0.5
4,197,471	-				+0.7
4,197,471	-				-0.1
4,197,471	-				+1.2
4,197,471	-				-1.0
4,197,532	+				+1.2
4,198,117	+		PFLU_RS18550	0.25	-1.6
4,198,118	-		PFLU_RS18550	0.26	-1.0
4,198,118	-		PFLU_RS18550	0.26	-2.3
4,198,118	-		PFLU_RS18550	0.26	-0.4
4,198,118	-		PFLU_RS18550	0.26	-1.7
4,198,118	-		PFLU_RS18550	0.26	-2.3
4,198,118	-		PFLU_RS18550	0.26	-1.7
4,198,178	+		PFLU_RS18550	0.28	-1.5
4,198,179	-		PFLU_RS18550	0.28	-0.9
4,198,226	+		PFLU_RS18550	0.30	+1.6
4,198,226	+		PFLU_RS18550	0.30	+0.6
4,198,227	-		PFLU_RS18550	0.30	+0.6
4,198,227	-		PFLU_RS18550	0.30	-1.6
4,198,227	-		PFLU_RS18550	0.30	-1.5
4,198,257	+		PFLU_RS18550	0.32	-0.4
4,198,417	+		PFLU_RS18550	0.39	-0.1
4,198,483	-		PFLU_RS18550	0.42	-1.6
4,198,483	-		PFLU_RS18550	0.42	-1.0
4,198,634	+		PFLU_RS18550	0.48	-1.5
4,198,634	+		PFLU_RS18550	0.48	-1.4
4,198,634	+		PFLU_RS18550	0.48	+0.2
4,198,634	+		PFLU_RS18550	0.48	+1.6
4,198,634	+		PFLU_RS18550	0.48	+0.0
4,198,634	+		PFLU_RS18550	0.48	-2.1
4,198,635	-		PFLU_RS18550	0.48	-1.8
4,198,635	-		PFLU_RS18550	0.48	+0.0
4,198,679	+		PFLU_RS18550	0.50	-1.0
4,198,679	+		PFLU_RS18550	0.50	+2.9
4,198,679	+		PFLU_RS18550	0.50	-0.7
4,198,680	-		PFLU_RS18550	0.50	-0.2
4,198,898	-		PFLU_RS18550	0.60	-0.7
4,199,021	+		PFLU_RS18550	0.65	-0.5
4,199,021	+		PFLU_RS18550	0.65	-1.0
4,199,022	-		PFLU_RS18550	0.65	-1.8
4,199,022	-		PFLU_RS18550	0.65	-2.7
4,199,022	-		PFLU_RS18550	0.65	-1.2
4,199,022	-		PFLU_RS18550	0.65	+1.0
4,199,022	-		PFLU_RS18550	0.65	-0.7
4,199,022	-		PFLU_RS18550	0.65	+0.5
4,199,022	-		PFLU_RS18550	0.65	-0.4
4,199,061	-		PFLU_RS18550	0.67	-1.2
4,199,061	-		PFLU_RS18550	0.67	+0.6
4,199,139	+		PFLU_RS18550	0.70	-1.5
4,199,140	-		PFLU_RS18550	0.71	-1.0
4,199,140	-		PFLU_RS18550	0.71	-0.8
4,199,204	-		PFLU_RS18550	0.73	-1.1
4,199,282	+		PFLU_RS18550	0.77	-1.0
4,199,282	+		PFLU_RS18550	0.77	+0.0
4,199,282	+		PFLU_RS18550	0.77	+1.2
4,199,282	+		PFLU_RS18550	0.77	+1.6
4,199,283	-		PFLU_RS18550	0.77	-1.6
4,199,283	-		PFLU_RS18550	0.77	-0.2
4,199,283	-		PFLU_RS18550	0.77	-0.7
4,199,385	+		PFLU_RS18550	0.81	-0.5
4,199,385	+		PFLU_RS18550	0.81	+1.0
4,199,385	+		PFLU_RS18550	0.81	-1.7
4,199,386	-		PFLU_RS18550	0.81	-2.6
4,199,399	+		PFLU_RS18550	0.82	+0.6
4,199,399	+		PFLU_RS18550	0.82	+0.0
4,199,399	+		PFLU_RS18550	0.82	-0.2
4,199,399	+		PFLU_RS18550	0.82	-0.4
4,199,399	+		PFLU_RS18550	0.82	-1.0
4,199,399	+		PFLU_RS18550	0.82	-1.4
4,199,400	-		PFLU_RS18550	0.82	-2.6
4,199,400	-		PFLU_RS18550	0.82	-0.4
4,199,400	-		PFLU_RS18550	0.82	-1.0
4,199,400	-		PFLU_RS18550	0.82	+0.6
4,199,400	-		PFLU_RS18550	0.82	-0.6
4,199,400	-		PFLU_RS18550	0.82	-0.6
4,199,626	-				-2.8
4,199,677	+				-1.5
4,199,677	+				-1.4
4,199,677	+				-1.2
4,199,677	+				-1.3
4,199,677	+				-0.5
4,199,677	+				-1.0
4,199,677	+				-1.4
4,199,677	+				+0.6
4,199,677	+				+0.6
4,199,678	-				-1.2
4,199,678	-				-0.4
4,199,678	-				+0.0
4,199,808	+				-2.5
4,199,808	+				-0.7
4,199,808	+				+1.3
4,199,808	+				+1.1
4,199,808	+				+0.9
4,199,808	+				+0.5
4,199,808	+				-0.4
4,199,808	+				+1.0
4,199,808	+				+0.3
4,199,808	+				+1.2
4,199,808	+				-2.5
4,199,808	+				+0.2
4,199,808	+				-1.5
4,199,808	+				+0.2
4,199,808	+				+1.5
4,199,808	+				-0.6
4,199,808	+				+1.6
4,199,808	+				+0.6
4,199,808	+				+0.0
4,199,808	+				-3.5
4,199,808	+				+0.2
4,199,808	+				+0.2
4,199,808	+				-1.8
4,199,808	+				-2.2
4,199,808	+				-1.0
4,199,808	+				-2.0
4,199,808	+				-0.5
4,199,809	-				+0.9
4,199,809	-				+0.6
4,199,809	-				+1.2
4,199,809	-				-0.0
4,199,809	-				-0.4
4,199,809	-				+1.8
4,199,809	-				-0.2
4,199,809	-				+0.7
4,199,809	-				-0.3
4,199,809	-				+0.4
4,199,809	-				-0.7
4,199,809	-				+0.4
4,199,809	-				+0.8
4,199,809	-				-0.1
4,199,809	-				+0.6
4,199,809	-				-0.6
4,199,809	-				+0.2
4,199,809	-				-0.6
4,199,809	-				+0.7
4,199,821	+				-0.7
4,199,821	+				+0.3
4,199,821	+				+1.2
4,199,821	+				-0.6
4,199,822	-				-0.8
4,199,890	+		PFLU_RS18555	0.14	+2.6
4,199,890	+		PFLU_RS18555	0.14	-0.2
4,199,891	-		PFLU_RS18555	0.14	-1.1
4,199,933	+		PFLU_RS18555	0.26	+0.0
4,199,946	+		PFLU_RS18555	0.29	+3.0
4,199,946	+		PFLU_RS18555	0.29	-2.2
4,199,946	+		PFLU_RS18555	0.29	-0.4
4,199,946	+		PFLU_RS18555	0.29	-0.7
4,199,946	+		PFLU_RS18555	0.29	+0.0
4,199,946	+		PFLU_RS18555	0.29	-0.4
4,199,947	-		PFLU_RS18555	0.30	+0.1
4,199,947	-		PFLU_RS18555	0.30	-1.0
4,199,947	-		PFLU_RS18555	0.30	-0.5
4,199,947	-		PFLU_RS18555	0.30	+0.4
4,199,947	-		PFLU_RS18555	0.30	+1.7
4,199,947	-		PFLU_RS18555	0.30	+0.2
4,199,947	-		PFLU_RS18555	0.30	+0.6
4,199,947	-		PFLU_RS18555	0.30	-0.2
4,199,947	-		PFLU_RS18555	0.30	+0.3
4,199,947	-		PFLU_RS18555	0.30	-0.7
4,199,979	+		PFLU_RS18555	0.38	+0.2
4,199,979	+		PFLU_RS18555	0.38	-1.0
4,199,979	+		PFLU_RS18555	0.38	-1.8
4,199,979	+		PFLU_RS18555	0.38	-1.0
4,199,979	+		PFLU_RS18555	0.38	+1.0
4,199,979	+		PFLU_RS18555	0.38	-1.0
4,199,979	+		PFLU_RS18555	0.38	-0.2
4,199,980	-		PFLU_RS18555	0.38	+0.8
4,199,980	-		PFLU_RS18555	0.38	-0.0
4,199,980	-		PFLU_RS18555	0.38	+1.6
4,199,980	-		PFLU_RS18555	0.38	-1.7
4,199,980	-		PFLU_RS18555	0.38	-0.5
4,200,009	-		PFLU_RS18555	0.46	+0.8
4,200,009	-		PFLU_RS18555	0.46	-0.1
4,200,052	+		PFLU_RS18555	0.58	+0.2
4,200,052	+		PFLU_RS18555	0.58	+0.6
4,200,053	-		PFLU_RS18555	0.58	+0.0
4,200,079	+		PFLU_RS18555	0.65	-1.2
4,200,079	+		PFLU_RS18555	0.65	-0.1
4,200,079	+		PFLU_RS18555	0.65	+1.2
4,200,079	+		PFLU_RS18555	0.65	-1.0
4,200,079	+		PFLU_RS18555	0.65	-1.1
4,200,079	+		PFLU_RS18555	0.65	-2.0
4,200,079	+		PFLU_RS18555	0.65	-0.7
4,200,079	+		PFLU_RS18555	0.65	-0.5
4,200,079	+		PFLU_RS18555	0.65	-3.0
4,200,079	+		PFLU_RS18555	0.65	+1.3
4,200,079	+		PFLU_RS18555	0.65	+2.9
4,200,079	+		PFLU_RS18555	0.65	+0.7
4,200,079	+		PFLU_RS18555	0.65	-1.0
4,200,080	-		PFLU_RS18555	0.66	+1.6
4,200,080	-		PFLU_RS18555	0.66	-0.4
4,200,080	-		PFLU_RS18555	0.66	+2.6
4,200,080	-		PFLU_RS18555	0.66	-0.2
4,200,080	-		PFLU_RS18555	0.66	+1.0
4,200,080	-		PFLU_RS18555	0.66	+0.3
4,200,080	-		PFLU_RS18555	0.66	-1.1
4,200,080	-		PFLU_RS18555	0.66	-0.2
4,200,080	-		PFLU_RS18555	0.66	-0.1
4,200,080	-		PFLU_RS18555	0.66	+0.6
4,200,096	+		PFLU_RS18555	0.70	+0.0
4,200,097	-		PFLU_RS18555	0.70	-0.8
4,200,180	+				+0.7
4,200,180	+				-0.7
4,200,181	-				-1.2
4,200,181	-				-1.5
4,200,181	-				+0.1
4,200,235	+				-2.5
4,200,235	+				-1.8
4,200,235	+				+1.3
4,200,235	+				+1.2
4,200,235	+				-0.8
4,200,235	+				-0.7
4,200,235	+				-0.2
4,200,236	-				+0.3
4,200,236	-				+0.9
4,200,236	-				+0.4
4,200,236	-				-2.0
4,200,236	-				+0.1
4,200,294	-				+0.5
4,200,294	-				+1.6
4,200,310	+				-0.2
4,200,310	+				-0.9
4,200,310	+				-0.4
4,200,310	+				+0.6
4,200,310	+				+0.0
4,200,310	+				+1.1
4,200,310	+				-0.1
4,200,310	+				-0.8
4,200,311	-				-1.8
4,200,311	-				+0.4
4,200,319	+				-1.0
4,200,319	+				+1.1
4,200,320	-				-0.1
4,200,320	-				+1.0
4,200,320	-				+0.6
4,200,320	-				-2.2
4,200,320	-				+0.4
4,200,320	-				-0.1
4,200,320	-				-1.5
4,200,360	+				-1.3
4,200,360	+				+0.3
4,200,360	+				-0.2
4,200,360	+				+1.4
4,200,360	+				+0.2
4,200,360	+				+0.0
4,200,360	+				+0.8
4,200,360	+				+1.1
4,200,360	+				-0.6
4,200,361	-				-0.8
4,200,361	-				+0.1
4,200,361	-				-1.8
4,200,361	-				-0.1
4,200,361	-				+1.0
4,200,361	-				+0.0
4,200,361	-				-1.0
4,200,361	-				-0.3
4,200,361	-				-1.7
4,200,361	-				+1.6
4,200,361	-				+0.8
4,200,361	-				-0.6
4,200,361	-				-1.7
4,200,361	-				+1.6
4,200,365	-				+0.4
4,200,383	-				+0.4
4,200,394	+				+0.3
4,200,394	+				-0.5
4,200,394	+				+0.1
4,200,394	+				+1.3
4,200,394	+				-0.0
4,200,394	+				-0.3
4,200,395	-				+0.3
4,200,431	+				+3.0
4,200,431	+				-0.5
4,200,431	+				+1.4
4,200,431	+				-0.5
4,200,431	+				+0.2
4,200,431	+				+0.4
4,200,431	+				-1.2
4,200,431	+				-2.8
4,200,431	+				-0.3
4,200,431	+				-0.2
4,200,431	+				+0.7
4,200,431	+				-0.1
4,200,431	+				-1.4
4,200,432	-				-0.4
4,200,432	-				-0.5
4,200,432	-				-1.4
4,200,432	-				+0.4
4,200,432	-				-1.4
4,200,432	-				-2.0
4,200,432	-				-1.2
4,200,432	-				+0.1
4,200,432	-				+0.5
4,200,432	-				+0.0
4,200,432	-				-1.2
4,200,470	+		PFLU_RS18560	0.14	+0.7
4,200,470	+		PFLU_RS18560	0.14	-0.7
4,200,470	+		PFLU_RS18560	0.14	-0.9
4,200,471	-		PFLU_RS18560	0.14	-1.8
4,200,471	-		PFLU_RS18560	0.14	+1.3
4,200,471	-		PFLU_RS18560	0.14	+0.2
4,200,471	-		PFLU_RS18560	0.14	-0.2
4,200,471	-		PFLU_RS18560	0.14	+0.5
4,200,494	+		PFLU_RS18560	0.22	-0.1
4,200,494	+		PFLU_RS18560	0.22	-0.9
4,200,495	-		PFLU_RS18560	0.23	+1.0
4,200,495	-		PFLU_RS18560	0.23	-1.1
4,200,509	+		PFLU_RS18560	0.28	+0.9
4,200,510	-		PFLU_RS18560	0.28	-0.4
4,200,510	-		PFLU_RS18560	0.28	-1.1
4,200,558	+		PFLU_RS18560	0.46	-0.7
4,200,559	-		PFLU_RS18560	0.46	-0.4
4,200,559	-		PFLU_RS18560	0.46	-0.2
4,200,611	+		PFLU_RS18560	0.65	+0.9
4,200,611	+		PFLU_RS18560	0.65	-0.1
4,200,611	+		PFLU_RS18560	0.65	-0.7
4,200,611	+		PFLU_RS18560	0.65	-0.7
4,200,611	+		PFLU_RS18560	0.65	-0.5
4,200,612	-		PFLU_RS18560	0.65	+0.2
4,200,612	-		PFLU_RS18560	0.65	-1.1
4,200,724	+				+0.5
4,200,724	+				-2.7
4,200,724	+				+0.3
4,200,724	+				+0.2
4,200,725	-				-0.1
4,200,725	-				+0.2
4,200,725	-				-0.4
4,200,725	-				-0.2
4,200,734	+				-2.4
4,200,790	+				-1.2
4,200,790	+				-2.1
4,200,790	+				+1.1
4,200,790	+				+0.4
4,200,790	+				+0.4
4,200,790	+				+0.3
4,200,790	+				+0.8
4,200,790	+				+0.5
4,200,791	-				-0.1
4,200,791	-				-0.5
4,200,791	-				-1.1
4,200,791	-				-1.9
4,200,791	-				+1.1
4,200,791	-				-0.5
4,200,794	+				-0.3
4,200,794	+				+0.3
4,200,794	+				+0.1
4,200,794	+				-0.4
4,200,794	+				-1.5
4,200,794	+				+0.3
4,200,794	+				+0.1
4,200,794	+				+0.8
4,200,794	+				+1.0
4,200,794	+				-2.0
4,200,794	+				+0.3
4,200,794	+				+0.5
4,200,795	-				-1.1
4,200,795	-				-0.5
4,200,795	-				-2.1
4,200,795	-				-0.8
4,200,795	-				-1.0
4,200,795	-				+1.4
4,200,795	-				+0.6
4,200,795	-				-0.7
4,200,795	-				-0.1
4,200,795	-				-0.2