Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16200

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
3,679,699	+		PFLU_RS16195	0.44	-0.6
3,679,719	+		PFLU_RS16195	0.45	+0.9
3,679,719	+		PFLU_RS16195	0.45	+0.3
3,679,719	+		PFLU_RS16195	0.45	+0.4
3,679,719	+		PFLU_RS16195	0.45	+1.1
3,679,719	+		PFLU_RS16195	0.45	-0.2
3,679,719	+		PFLU_RS16195	0.45	-0.1
3,679,719	+		PFLU_RS16195	0.45	+0.4
3,679,719	+		PFLU_RS16195	0.45	+0.2
3,679,719	+		PFLU_RS16195	0.45	+0.1
3,679,719	+		PFLU_RS16195	0.45	-0.5
3,679,719	+		PFLU_RS16195	0.45	-0.1
3,679,720	-		PFLU_RS16195	0.45	-0.9
3,679,720	-		PFLU_RS16195	0.45	+0.6
3,679,854	+		PFLU_RS16195	0.54	-0.4
3,679,905	+		PFLU_RS16195	0.57	+0.5
3,679,905	+		PFLU_RS16195	0.57	-0.5
3,679,905	+		PFLU_RS16195	0.57	+0.7
3,679,905	+		PFLU_RS16195	0.57	-0.1
3,679,905	+		PFLU_RS16195	0.57	-0.9
3,679,905	+		PFLU_RS16195	0.57	+0.4
3,679,905	+		PFLU_RS16195	0.57	+0.9
3,679,905	+		PFLU_RS16195	0.57	+2.0
3,679,905	+		PFLU_RS16195	0.57	+0.7
3,679,906	-		PFLU_RS16195	0.57	+1.2
3,679,906	-		PFLU_RS16195	0.57	+0.2
3,679,906	-		PFLU_RS16195	0.57	-1.4
3,679,906	-		PFLU_RS16195	0.57	+0.4
3,679,906	-		PFLU_RS16195	0.57	-0.0
3,679,906	-		PFLU_RS16195	0.57	+2.3
3,679,906	-		PFLU_RS16195	0.57	-0.4
3,679,932	+		PFLU_RS16195	0.58	-0.9
3,679,932	+		PFLU_RS16195	0.58	+0.6
3,679,933	-		PFLU_RS16195	0.59	-0.9
3,679,933	-		PFLU_RS16195	0.59	+0.5
3,679,933	-		PFLU_RS16195	0.59	-1.2
3,679,933	-		PFLU_RS16195	0.59	-0.2
3,679,933	-		PFLU_RS16195	0.59	-1.6
3,679,976	+		PFLU_RS16195	0.61	+0.6
3,679,977	-		PFLU_RS16195	0.61	-2.1
3,679,977	-		PFLU_RS16195	0.61	+0.3
3,680,106	+		PFLU_RS16195	0.69	-1.2
3,680,107	-		PFLU_RS16195	0.69	+2.2
3,680,107	-		PFLU_RS16195	0.69	-1.1
3,680,107	-		PFLU_RS16195	0.69	-0.8
3,680,107	-		PFLU_RS16195	0.69	-2.4
3,680,233	-		PFLU_RS16195	0.77	-0.7
3,680,233	-		PFLU_RS16195	0.77	-1.2
3,680,233	-		PFLU_RS16195	0.77	+1.0
3,680,250	-		PFLU_RS16195	0.78	+0.2
3,680,295	+		PFLU_RS16195	0.81	-2.2
3,680,295	+		PFLU_RS16195	0.81	-0.7
3,680,295	+		PFLU_RS16195	0.81	+0.8
3,680,295	+		PFLU_RS16195	0.81	+1.1
3,680,296	-		PFLU_RS16195	0.81	-0.9
3,680,296	-		PFLU_RS16195	0.81	-0.5
3,680,296	-		PFLU_RS16195	0.81	+0.9
3,680,296	-		PFLU_RS16195	0.81	+0.5
3,680,379	+		PFLU_RS16195	0.86	+0.4
3,680,379	+		PFLU_RS16195	0.86	-0.1
3,680,379	+		PFLU_RS16195	0.86	-0.4
3,680,379	+		PFLU_RS16195	0.86	-0.5
3,680,380	-		PFLU_RS16195	0.86	+0.4
3,680,380	-		PFLU_RS16195	0.86	+1.3
3,680,380	-		PFLU_RS16195	0.86	-2.3
3,680,477	-				-0.7
3,680,484	+				+1.3
3,680,484	+				+1.8
3,680,484	+				-0.1
3,680,484	+				+2.0
3,680,485	-				+0.4
3,680,485	-				-0.1
3,680,485	-				-2.1
3,680,485	-				-0.3
3,680,485	-				-1.0
3,680,485	-				+0.2
3,680,485	-				-1.4
3,680,485	-				-0.8
3,680,485	-				-0.2
3,680,487	+				-1.2
3,680,488	-				-1.9
3,680,785	+		PFLU_RS16200	0.18	-0.5
3,680,785	+		PFLU_RS16200	0.18	-2.7
3,680,810	+		PFLU_RS16200	0.20	+0.3
3,680,810	+		PFLU_RS16200	0.20	+0.2
3,680,811	-		PFLU_RS16200	0.20	-1.8
3,680,976	+		PFLU_RS16200	0.38	-1.5
3,680,977	-		PFLU_RS16200	0.38	-1.9
3,680,977	-		PFLU_RS16200	0.38	-1.2
3,681,173	+		PFLU_RS16200	0.60	-0.9
3,681,212	-		PFLU_RS16200	0.64	-0.7
3,681,244	+		PFLU_RS16200	0.67	-0.2
3,681,244	+		PFLU_RS16200	0.67	-0.5
3,681,312	-		PFLU_RS16200	0.75	-0.6
3,681,312	-		PFLU_RS16200	0.75	-0.4
3,681,312	-		PFLU_RS16200	0.75	-1.2
3,681,437	+		PFLU_RS16200	0.88	-1.3
3,681,485	+				-2.4
3,681,485	+				-1.8
3,681,485	+				-0.4
3,681,485	+				-0.9
3,681,485	+				-2.1
3,681,485	+				-0.9
3,681,485	+				-0.9
3,681,486	-				-0.7
3,681,486	-				-0.9
3,681,486	-				-0.5
3,681,486	-				+0.3
3,681,486	-				+0.6
3,681,486	-				-0.1
3,681,486	-				+0.7
3,681,486	-				-2.1
3,681,487	+				-0.9
3,681,487	+				+0.1
3,681,487	+				+0.6
3,681,487	+				+0.7
3,681,487	+				+0.4
3,681,487	+				+0.6
3,681,488	-				-1.4
3,681,488	-				-1.7
3,681,488	-				-0.6
3,681,488	-				+0.4
3,681,488	-				-0.1
3,681,563	-				+0.7
3,681,583	+				+1.4
3,681,584	-				-1.9
3,681,584	-				-2.1
3,681,722	+		PFLU_RS16205	0.14	-1.5
3,681,723	-		PFLU_RS16205	0.14	-2.0
3,681,723	-		PFLU_RS16205	0.14	-0.2
3,681,995	+		PFLU_RS16205	0.43	-1.2
3,681,995	+		PFLU_RS16205	0.43	-0.4
3,681,995	+		PFLU_RS16205	0.43	-0.7
3,681,996	-		PFLU_RS16205	0.43	+1.3
3,681,996	-		PFLU_RS16205	0.43	+1.1
3,681,996	-		PFLU_RS16205	0.43	+0.2
3,682,011	-		PFLU_RS16205	0.44	+0.5
3,682,110	-		PFLU_RS16205	0.55	-0.7
3,682,376	+		PFLU_RS16205	0.83	+0.6
3,682,376	+		PFLU_RS16205	0.83	-0.0
3,682,376	+		PFLU_RS16205	0.83	-0.6
3,682,376	+		PFLU_RS16205	0.83	+1.1
3,682,376	+		PFLU_RS16205	0.83	-0.3
3,682,376	+		PFLU_RS16205	0.83	-1.4
3,682,376	+		PFLU_RS16205	0.83	-0.5
3,682,377	-		PFLU_RS16205	0.83	-0.1
3,682,377	-		PFLU_RS16205	0.83	-0.8
3,682,377	-		PFLU_RS16205	0.83	-0.8
3,682,377	-		PFLU_RS16205	0.83	-0.0
3,682,377	-		PFLU_RS16205	0.83	+0.8
3,682,377	-		PFLU_RS16205	0.83	+1.2
3,682,379	+		PFLU_RS16205	0.83	+0.6
3,682,379	+		PFLU_RS16205	0.83	+1.2
3,682,379	+		PFLU_RS16205	0.83	-2.1
3,682,379	+		PFLU_RS16205	0.83	-2.9
3,682,379	+		PFLU_RS16205	0.83	+0.5
3,682,379	+		PFLU_RS16205	0.83	-0.9
3,682,379	+		PFLU_RS16205	0.83	+1.4
3,682,379	+		PFLU_RS16205	0.83	-0.4
3,682,380	-		PFLU_RS16205	0.83	+0.1
3,682,380	-		PFLU_RS16205	0.83	+1.4
3,682,380	-		PFLU_RS16205	0.83	-1.4
3,682,380	-		PFLU_RS16205	0.83	+0.1
3,682,380	-		PFLU_RS16205	0.83	+0.1
3,682,409	-		PFLU_RS16205	0.86	-0.6
3,682,416	-		PFLU_RS16205	0.87	-0.1
3,682,481	+				+0.6
3,682,481	+				+0.1
3,682,481	+				+1.0
3,682,482	-				+0.8
3,682,482	-				+0.2
3,682,482	-				+0.1
3,682,482	-				-0.9
3,682,502	+				-1.2
3,682,503	-				+1.8