Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS10580

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
2,330,309	+		PFLU_RS10575	0.29	+0.1
2,330,310	-		PFLU_RS10575	0.29	+0.1
2,330,310	-		PFLU_RS10575	0.29	+0.2
2,330,642	+		PFLU_RS10575	0.57	-0.6
2,330,642	+		PFLU_RS10575	0.57	+0.0
2,330,642	+		PFLU_RS10575	0.57	-0.4
2,330,642	+		PFLU_RS10575	0.57	+0.1
2,330,642	+		PFLU_RS10575	0.57	-2.7
2,330,643	-		PFLU_RS10575	0.58	-0.1
2,330,643	-		PFLU_RS10575	0.58	-0.2
2,330,643	-		PFLU_RS10575	0.58	-0.7
2,330,643	-		PFLU_RS10575	0.58	-0.2
2,330,681	+		PFLU_RS10575	0.61	-0.3
2,330,682	-		PFLU_RS10575	0.61	-0.4
2,330,773	+		PFLU_RS10575	0.69	+0.7
2,330,773	+		PFLU_RS10575	0.69	-0.7
2,330,773	+		PFLU_RS10575	0.69	+0.2
2,330,773	+		PFLU_RS10575	0.69	+0.2
2,330,773	+		PFLU_RS10575	0.69	-0.8
2,330,773	+		PFLU_RS10575	0.69	+1.4
2,330,774	-		PFLU_RS10575	0.69	+0.6
2,330,774	-		PFLU_RS10575	0.69	+0.0
2,330,774	-		PFLU_RS10575	0.69	+0.2
2,330,774	-		PFLU_RS10575	0.69	-0.1
2,330,774	-		PFLU_RS10575	0.69	+0.0
2,330,774	-		PFLU_RS10575	0.69	-0.3
2,330,777	+		PFLU_RS10575	0.69	-0.7
2,330,777	+		PFLU_RS10575	0.69	-0.1
2,330,778	-		PFLU_RS10575	0.69	+1.9
2,330,778	-		PFLU_RS10575	0.69	+0.4
2,330,778	-		PFLU_RS10575	0.69	-0.8
2,330,778	-		PFLU_RS10575	0.69	-0.7
2,330,778	-		PFLU_RS10575	0.69	+1.6
2,330,818	+		PFLU_RS10575	0.72	+1.3
2,330,818	+		PFLU_RS10575	0.72	-2.5
2,330,818	+		PFLU_RS10575	0.72	+1.8
2,330,818	+		PFLU_RS10575	0.72	+1.1
2,330,818	+		PFLU_RS10575	0.72	+1.4
2,330,818	+		PFLU_RS10575	0.72	+0.9
2,330,818	+		PFLU_RS10575	0.72	-0.1
2,330,818	+		PFLU_RS10575	0.72	-3.0
2,330,818	+		PFLU_RS10575	0.72	+0.1
2,330,818	+		PFLU_RS10575	0.72	+0.4
2,330,819	-		PFLU_RS10575	0.72	+0.4
2,330,819	-		PFLU_RS10575	0.72	+2.0
2,330,819	-		PFLU_RS10575	0.72	+0.2
2,330,819	-		PFLU_RS10575	0.72	-2.2
2,330,819	-		PFLU_RS10575	0.72	+2.2
2,330,819	-		PFLU_RS10575	0.72	-1.4
2,330,819	-		PFLU_RS10575	0.72	-0.1
2,330,992	+		PFLU_RS10575	0.87	+0.2
2,330,992	+		PFLU_RS10575	0.87	+0.3
2,330,992	+		PFLU_RS10575	0.87	+0.2
2,330,992	+		PFLU_RS10575	0.87	+0.7
2,330,992	+		PFLU_RS10575	0.87	-0.7
2,330,992	+		PFLU_RS10575	0.87	+0.4
2,330,993	-		PFLU_RS10575	0.87	+0.6
2,330,993	-		PFLU_RS10575	0.87	-0.1
2,330,993	-		PFLU_RS10575	0.87	+0.6
2,330,993	-		PFLU_RS10575	0.87	-1.8
2,330,993	-		PFLU_RS10575	0.87	-0.7
2,330,993	-		PFLU_RS10575	0.87	-2.2
2,331,450	+		PFLU_RS10580	0.45	-1.1
2,331,451	-		PFLU_RS10580	0.45	+0.7
2,331,451	-		PFLU_RS10580	0.45	-1.1
2,331,451	-		PFLU_RS10580	0.45	-0.9
2,331,451	-		PFLU_RS10580	0.45	-2.4
2,331,451	-		PFLU_RS10580	0.45	-0.3
2,331,451	-		PFLU_RS10580	0.45	+0.8
2,331,451	-		PFLU_RS10580	0.45	-0.9
2,331,489	+		PFLU_RS10580	0.50	+1.5
2,331,489	+		PFLU_RS10580	0.50	+0.0
2,331,489	+		PFLU_RS10580	0.50	-1.3
2,331,489	+		PFLU_RS10580	0.50	+0.5
2,331,490	-		PFLU_RS10580	0.51	+0.4
2,331,490	-		PFLU_RS10580	0.51	+1.0
2,331,490	-		PFLU_RS10580	0.51	-0.1
2,331,490	-		PFLU_RS10580	0.51	-0.4
2,331,490	-		PFLU_RS10580	0.51	+0.2
2,331,712	+		PFLU_RS10580	0.84	+0.8
2,331,712	+		PFLU_RS10580	0.84	-0.9
2,331,712	+		PFLU_RS10580	0.84	+1.2
2,331,712	+		PFLU_RS10580	0.84	+1.2
2,331,712	+		PFLU_RS10580	0.84	-1.0
2,331,712	+		PFLU_RS10580	0.84	-0.4
2,331,712	+		PFLU_RS10580	0.84	+0.8
2,331,712	+		PFLU_RS10580	0.84	+0.0
2,331,712	+		PFLU_RS10580	0.84	-1.5
2,331,712	+		PFLU_RS10580	0.84	+2.7
2,331,712	+		PFLU_RS10580	0.84	-0.4
2,331,712	+		PFLU_RS10580	0.84	-0.3
2,331,712	+		PFLU_RS10580	0.84	-1.1
2,331,712	+		PFLU_RS10580	0.84	+0.5
2,331,713	-		PFLU_RS10580	0.84	+0.2
2,331,713	-		PFLU_RS10580	0.84	-2.2
2,331,713	-		PFLU_RS10580	0.84	-2.2
2,331,713	-		PFLU_RS10580	0.84	+0.7
2,331,713	-		PFLU_RS10580	0.84	+0.0
2,331,713	-		PFLU_RS10580	0.84	-0.0
2,331,713	-		PFLU_RS10580	0.84	+1.6
2,331,713	-		PFLU_RS10580	0.84	+0.8
2,331,713	-		PFLU_RS10580	0.84	+0.6
2,331,713	-		PFLU_RS10580	0.84	+0.1
2,331,713	-		PFLU_RS10580	0.84	+0.5
2,331,713	-		PFLU_RS10580	0.84	+1.6
2,331,713	-		PFLU_RS10580	0.84	-0.1
2,331,713	-		PFLU_RS10580	0.84	+0.4
2,331,713	-		PFLU_RS10580	0.84	+0.1
2,331,713	-		PFLU_RS10580	0.84	-1.1
2,331,713	-		PFLU_RS10580	0.84	+1.0
2,331,713	-		PFLU_RS10580	0.84	-2.0
2,331,713	-		PFLU_RS10580	0.84	-0.8
2,331,713	-		PFLU_RS10580	0.84	+0.5
2,331,713	-		PFLU_RS10580	0.84	-0.4
2,331,755	-				-0.1
2,331,807	-				+0.5
2,331,818	+				+0.0
2,331,818	+				+0.7
2,331,818	+				+0.9
2,331,819	-				-1.3
2,331,819	-				-0.6
2,331,828	+				-1.2
2,331,828	+				-1.8
2,331,828	+				+0.2
2,331,828	+				-1.0
2,331,828	+				+0.9
2,331,829	-				-2.7
2,331,829	-				+0.2
2,331,851	+				+0.5
2,331,851	+				+1.1
2,331,914	+				-0.6
2,331,914	+				-2.6
2,331,914	+				-0.5
2,331,914	+				+0.1
2,331,914	+				+0.7
2,331,914	+				-0.9
2,331,914	+				+0.1
2,331,914	+				-0.1
2,331,914	+				+0.8
2,331,915	-				+0.3
2,331,915	-				-0.7
2,331,915	-				-0.2
2,331,915	-				-2.9
2,331,915	-				-2.4
2,331,915	-				-1.3
2,331,915	-				-0.2
2,331,915	-				-0.2
2,331,915	-				-0.4
2,332,040	+		PFLU_RS10585	0.27	-0.3
2,332,040	+		PFLU_RS10585	0.27	+0.1
2,332,040	+		PFLU_RS10585	0.27	-1.0
2,332,041	-		PFLU_RS10585	0.27	-0.3
2,332,041	-		PFLU_RS10585	0.27	-2.0
2,332,171	+		PFLU_RS10585	0.46	-1.6
2,332,310	+		PFLU_RS10585	0.66	+0.0
2,332,310	+		PFLU_RS10585	0.66	-0.5
2,332,310	+		PFLU_RS10585	0.66	+0.2
2,332,310	+		PFLU_RS10585	0.66	-0.1
2,332,310	+		PFLU_RS10585	0.66	-0.3
2,332,311	-		PFLU_RS10585	0.66	+0.6
2,332,311	-		PFLU_RS10585	0.66	-1.1
2,332,311	-		PFLU_RS10585	0.66	-1.1
2,332,517	+				-0.4
2,332,517	+				+0.2
2,332,518	-				-2.5
2,332,518	-				+0.7
2,332,518	-				+0.5
2,332,548	+				-1.0
2,332,548	+				-1.2
2,332,548	+				-1.3
2,332,548	+				+0.9
2,332,548	+				-0.6
2,332,548	+				-2.3
2,332,549	-				+0.9
2,332,549	-				+0.7
2,332,549	-				-0.9
2,332,549	-				+0.2