Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS09575

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
2,114,635	+		PFLU_RS09570	0.34	+0.2
2,114,635	+		PFLU_RS09570	0.34	+0.4
2,114,635	+		PFLU_RS09570	0.34	-1.0
2,114,635	+		PFLU_RS09570	0.34	-0.7
2,114,635	+		PFLU_RS09570	0.34	-0.9
2,114,635	+		PFLU_RS09570	0.34	+1.8
2,114,636	-		PFLU_RS09570	0.34	+0.7
2,114,636	-		PFLU_RS09570	0.34	-2.8
2,114,636	-		PFLU_RS09570	0.34	-0.4
2,114,636	-		PFLU_RS09570	0.34	-0.4
2,114,636	-		PFLU_RS09570	0.34	-1.2
2,115,043	+		PFLU_RS09570	0.74	+1.3
2,115,043	+		PFLU_RS09570	0.74	+0.0
2,115,043	+		PFLU_RS09570	0.74	-0.0
2,115,043	+		PFLU_RS09570	0.74	-0.3
2,115,044	-		PFLU_RS09570	0.75	+2.0
2,115,044	-		PFLU_RS09570	0.75	-0.7
2,115,044	-		PFLU_RS09570	0.75	-0.9
2,115,097	+		PFLU_RS09570	0.80	-0.2
2,115,097	+		PFLU_RS09570	0.80	+0.8
2,115,097	+		PFLU_RS09570	0.80	+0.0
2,115,097	+		PFLU_RS09570	0.80	-1.1
2,115,098	-		PFLU_RS09570	0.80	+0.1
2,115,101	-		PFLU_RS09570	0.80	-2.5
2,115,202	+				-0.7
2,115,203	-				-0.8
2,115,274	-				-1.0
2,115,341	+				+1.5
2,115,341	+				+0.3
2,115,341	+				-1.0
2,115,341	+				-1.3
2,115,341	+				-2.7
2,115,341	+				-0.9
2,115,342	-				+1.6
2,115,342	-				-1.9
2,115,342	-				+2.6
2,115,342	-				-0.4
2,115,414	+				-1.9
2,115,414	+				+0.1
2,115,485	+				+0.3
2,115,486	-				+0.2
2,115,539	+				+0.4
2,115,539	+				-0.7
2,115,540	-				-0.2
2,115,556	+				+1.9
2,115,557	-				-1.6
2,115,577	-				+1.6
2,115,577	-				-1.2
2,115,577	-				+1.6
2,115,577	-				+2.2
2,115,611	+				+1.6
2,115,611	+				+0.4
2,115,611	+				+0.1
2,115,611	+				+0.7
2,115,611	+				-0.2
2,115,611	+				+2.2
2,115,612	-				-1.5
2,115,612	-				-1.2
2,115,683	-		PFLU_RS09575	0.19	-0.3
2,115,711	+		PFLU_RS09575	0.23	-0.0
2,115,950	+		PFLU_RS09575	0.58	-1.2
2,115,950	+		PFLU_RS09575	0.58	-0.8
2,115,950	+		PFLU_RS09575	0.58	-1.2
2,115,951	-		PFLU_RS09575	0.58	-1.4
2,115,951	-		PFLU_RS09575	0.58	+1.0
2,115,951	-		PFLU_RS09575	0.58	+0.6
2,115,951	-		PFLU_RS09575	0.58	-0.0
2,116,031	+		PFLU_RS09575	0.70	-1.1
2,116,031	+		PFLU_RS09575	0.70	-2.5
2,116,032	-		PFLU_RS09575	0.70	-1.2
2,116,032	-		PFLU_RS09575	0.70	-0.3
2,116,123	+		PFLU_RS09575	0.83	-0.0
2,116,141	-		PFLU_RS09575	0.86	-1.4
2,116,209	+				-0.5
2,116,209	+				-0.8
2,116,210	-				-0.7
2,116,236	-				-0.6
2,116,236	-				+0.2
2,116,376	+		PFLU_RS09580	0.13	-0.0
2,116,377	-		PFLU_RS09580	0.13	+0.2
2,116,432	+		PFLU_RS09580	0.17	+0.3
2,116,432	+		PFLU_RS09580	0.17	+0.1
2,116,432	+		PFLU_RS09580	0.17	+1.0
2,116,562	+		PFLU_RS09580	0.29	-0.9
2,116,562	+		PFLU_RS09580	0.29	+1.8
2,116,562	+		PFLU_RS09580	0.29	+3.0
2,116,563	-		PFLU_RS09580	0.29	+0.3
2,116,703	+		PFLU_RS09580	0.41	+0.5
2,116,703	+		PFLU_RS09580	0.41	+0.4
2,116,703	+		PFLU_RS09580	0.41	+0.4
2,116,703	+		PFLU_RS09580	0.41	+0.1
2,116,703	+		PFLU_RS09580	0.41	-0.4
2,116,704	-		PFLU_RS09580	0.41	-0.9
2,116,712	+		PFLU_RS09580	0.42	-1.0
2,116,712	+		PFLU_RS09580	0.42	+1.0
2,116,713	-		PFLU_RS09580	0.42	-2.0
2,116,713	-		PFLU_RS09580	0.42	+0.4
2,116,713	-		PFLU_RS09580	0.42	-0.1
2,116,718	+		PFLU_RS09580	0.43	-1.8
2,116,718	+		PFLU_RS09580	0.43	-0.2
2,116,718	+		PFLU_RS09580	0.43	+0.1
2,116,719	-		PFLU_RS09580	0.43	+0.2
2,116,719	-		PFLU_RS09580	0.43	+0.1
2,116,719	-		PFLU_RS09580	0.43	-1.1
2,116,719	-		PFLU_RS09580	0.43	-0.2
2,116,719	-		PFLU_RS09580	0.43	-0.6
2,116,719	-		PFLU_RS09580	0.43	-1.2
2,116,719	-		PFLU_RS09580	0.43	+0.5
2,116,719	-		PFLU_RS09580	0.43	+0.6
2,116,719	-		PFLU_RS09580	0.43	-1.1
2,116,761	+		PFLU_RS09580	0.46	-1.1
2,116,772	+		PFLU_RS09580	0.47	+0.6
2,116,772	+		PFLU_RS09580	0.47	+0.4
2,116,772	+		PFLU_RS09580	0.47	-0.9
2,116,772	+		PFLU_RS09580	0.47	-0.2
2,116,772	+		PFLU_RS09580	0.47	+0.8
2,116,772	+		PFLU_RS09580	0.47	-0.2
2,116,773	-		PFLU_RS09580	0.48	-0.7
2,116,773	-		PFLU_RS09580	0.48	+0.9
2,116,773	-		PFLU_RS09580	0.48	+0.8
2,116,773	-		PFLU_RS09580	0.48	+0.2
2,116,773	-		PFLU_RS09580	0.48	+0.4
2,116,773	-		PFLU_RS09580	0.48	+2.6
2,116,773	-		PFLU_RS09580	0.48	+2.2
2,116,773	-		PFLU_RS09580	0.48	+1.6
2,116,773	-		PFLU_RS09580	0.48	-1.0
2,116,773	-		PFLU_RS09580	0.48	+0.3
2,116,858	+		PFLU_RS09580	0.55	-0.0
2,116,859	-		PFLU_RS09580	0.55	-0.2
2,116,859	-		PFLU_RS09580	0.55	-0.4
2,116,862	-		PFLU_RS09580	0.55	+1.0
2,116,862	-		PFLU_RS09580	0.55	-1.0
2,116,862	-		PFLU_RS09580	0.55	-0.0
2,116,862	-		PFLU_RS09580	0.55	-0.7
2,116,862	-		PFLU_RS09580	0.55	+2.1
2,116,900	+		PFLU_RS09580	0.59	-0.4
2,116,900	+		PFLU_RS09580	0.59	-0.1
2,116,900	+		PFLU_RS09580	0.59	-2.2
2,116,900	+		PFLU_RS09580	0.59	+0.7
2,116,900	+		PFLU_RS09580	0.59	+0.8
2,116,900	+		PFLU_RS09580	0.59	+0.2
2,116,900	+		PFLU_RS09580	0.59	-0.9
2,116,900	+		PFLU_RS09580	0.59	-0.3
2,116,900	+		PFLU_RS09580	0.59	-0.6
2,116,900	+		PFLU_RS09580	0.59	+2.8
2,116,900	+		PFLU_RS09580	0.59	-0.1
2,116,901	-		PFLU_RS09580	0.59	+0.3
2,116,901	-		PFLU_RS09580	0.59	-0.7
2,116,901	-		PFLU_RS09580	0.59	+0.3
2,116,901	-		PFLU_RS09580	0.59	-0.4
2,116,901	-		PFLU_RS09580	0.59	+1.0
2,116,901	-		PFLU_RS09580	0.59	+1.1
2,116,901	-		PFLU_RS09580	0.59	-1.9
2,116,901	-		PFLU_RS09580	0.59	-0.4
2,116,901	-		PFLU_RS09580	0.59	-1.1
2,116,901	-		PFLU_RS09580	0.59	+0.2
2,116,901	-		PFLU_RS09580	0.59	-1.9
2,116,901	-		PFLU_RS09580	0.59	-1.9
2,116,901	-		PFLU_RS09580	0.59	+1.8
2,116,901	-		PFLU_RS09580	0.59	+2.0
2,116,936	+		PFLU_RS09580	0.62	-0.3
2,116,936	+		PFLU_RS09580	0.62	-0.6
2,116,936	+		PFLU_RS09580	0.62	+0.6
2,116,936	+		PFLU_RS09580	0.62	-0.2
2,116,937	-		PFLU_RS09580	0.62	-0.8
2,116,937	-		PFLU_RS09580	0.62	+0.9
2,116,937	-		PFLU_RS09580	0.62	-1.2
2,116,937	-		PFLU_RS09580	0.62	-1.1
2,116,937	-		PFLU_RS09580	0.62	+2.1
2,116,937	-		PFLU_RS09580	0.62	+0.6
2,116,937	-		PFLU_RS09580	0.62	-0.3
2,117,109	+		PFLU_RS09580	0.77	-0.6
2,117,110	-		PFLU_RS09580	0.77	+0.4
2,117,185	+		PFLU_RS09580	0.84	-0.8
2,117,210	-		PFLU_RS09580	0.86	-0.8