Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05875

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
1,316,040	+		PFLU_RS05865	0.66	+0.4
1,316,283	+				+0.7
1,316,283	+				-2.1
1,316,283	+				-0.3
1,316,283	+				+0.3
1,316,283	+				-0.1
1,316,283	+				-0.5
1,316,283	+				-0.6
1,316,283	+				-0.7
1,316,283	+				+0.0
1,316,283	+				-0.1
1,316,284	-				+0.4
1,316,284	-				-0.5
1,316,284	-				-0.2
1,316,284	-				-0.3
1,316,284	-				-1.1
1,316,284	-				+0.9
1,316,284	-				-2.3
1,316,284	-				-3.5
1,316,284	-				+0.3
1,316,284	-				+0.4
1,316,285	+				-2.0
1,316,285	+				+0.0
1,316,285	+				-1.4
1,316,285	+				+0.2
1,316,285	+				-0.3
1,316,285	+				-0.3
1,316,285	+				+0.1
1,316,285	+				-1.8
1,316,285	+				-0.4
1,316,285	+				-0.2
1,316,286	-				+0.9
1,316,286	-				-1.0
1,316,286	-				+0.3
1,316,286	-				-0.0
1,316,286	-				-0.1
1,316,286	-				-0.1
1,316,286	-				-0.5
1,316,286	-				-0.6
1,316,286	-				-0.2
1,316,286	-				-0.7
1,316,380	-				-1.4
1,316,380	-				+0.0
1,316,380	-				-0.1
1,316,380	-				-1.3
1,316,410	+				+1.0
1,316,410	+				+0.1
1,316,410	+				+0.7
1,316,410	+				+1.8
1,316,411	-				+0.2
1,316,411	-				+0.7
1,316,411	-				+1.5
1,316,411	-				+0.8
1,316,411	-				+0.4
1,316,411	-				-0.0
1,316,455	+				-0.9
1,316,455	+				-0.9
1,316,456	-				-1.5
1,316,571	+		PFLU_RS05870	0.30	-1.3
1,316,571	+		PFLU_RS05870	0.30	-3.1
1,316,571	+		PFLU_RS05870	0.30	-0.2
1,316,571	+		PFLU_RS05870	0.30	-0.2
1,316,571	+		PFLU_RS05870	0.30	-1.8
1,316,571	+		PFLU_RS05870	0.30	-3.4
1,316,571	+		PFLU_RS05870	0.30	-0.1
1,316,571	+		PFLU_RS05870	0.30	+1.0
1,316,571	+		PFLU_RS05870	0.30	+0.5
1,316,571	+		PFLU_RS05870	0.30	+0.2
1,316,572	-		PFLU_RS05870	0.30	+2.7
1,316,572	-		PFLU_RS05870	0.30	+0.8
1,316,598	+		PFLU_RS05870	0.35	+0.5
1,316,598	+		PFLU_RS05870	0.35	+2.1
1,316,598	+		PFLU_RS05870	0.35	-0.7
1,316,599	-		PFLU_RS05870	0.35	+0.6
1,316,599	-		PFLU_RS05870	0.35	-1.0
1,316,599	-		PFLU_RS05870	0.35	-0.6
1,316,599	-		PFLU_RS05870	0.35	-1.0
1,316,610	+		PFLU_RS05870	0.37	-1.5
1,316,610	+		PFLU_RS05870	0.37	+0.3
1,316,610	+		PFLU_RS05870	0.37	+0.7
1,316,610	+		PFLU_RS05870	0.37	+0.0
1,316,610	+		PFLU_RS05870	0.37	+1.2
1,316,610	+		PFLU_RS05870	0.37	+0.1
1,316,610	+		PFLU_RS05870	0.37	-0.7
1,316,611	-		PFLU_RS05870	0.37	+0.1
1,316,611	-		PFLU_RS05870	0.37	+0.7
1,316,611	-		PFLU_RS05870	0.37	-0.1
1,316,611	-		PFLU_RS05870	0.37	-0.5
1,316,611	-		PFLU_RS05870	0.37	+0.4
1,316,611	-		PFLU_RS05870	0.37	+0.7
1,316,611	-		PFLU_RS05870	0.37	+1.0
1,316,611	-		PFLU_RS05870	0.37	+0.1
1,316,611	-		PFLU_RS05870	0.37	-0.2
1,316,611	-		PFLU_RS05870	0.37	+1.4
1,316,611	-		PFLU_RS05870	0.37	-1.3
1,316,611	-		PFLU_RS05870	0.37	+1.1
1,316,718	+		PFLU_RS05870	0.56	-0.5
1,316,718	+		PFLU_RS05870	0.56	-0.3
1,316,718	+		PFLU_RS05870	0.56	-0.1
1,316,718	+		PFLU_RS05870	0.56	-0.1
1,316,718	+		PFLU_RS05870	0.56	-1.4
1,316,718	+		PFLU_RS05870	0.56	-0.9
1,316,719	-		PFLU_RS05870	0.57	+0.8
1,316,719	-		PFLU_RS05870	0.57	-0.6
1,316,719	-		PFLU_RS05870	0.57	+0.0
1,316,722	+		PFLU_RS05870	0.57	-0.4
1,316,722	+		PFLU_RS05870	0.57	-0.5
1,316,722	+		PFLU_RS05870	0.57	+0.3
1,316,722	+		PFLU_RS05870	0.57	+1.2
1,316,722	+		PFLU_RS05870	0.57	-0.6
1,316,722	+		PFLU_RS05870	0.57	-0.1
1,316,723	-		PFLU_RS05870	0.57	-0.4
1,316,723	-		PFLU_RS05870	0.57	-0.2
1,316,723	-		PFLU_RS05870	0.57	-0.2
1,316,723	-		PFLU_RS05870	0.57	-0.1
1,316,723	-		PFLU_RS05870	0.57	+0.1
1,316,723	-		PFLU_RS05870	0.57	+0.0
1,316,723	-		PFLU_RS05870	0.57	-0.6
1,316,723	-		PFLU_RS05870	0.57	+0.2
1,316,723	-		PFLU_RS05870	0.57	+1.1
1,316,723	-		PFLU_RS05870	0.57	+0.4
1,316,758	+		PFLU_RS05870	0.64	+0.1
1,316,852	+		PFLU_RS05870	0.80	+1.9
1,316,882	+		PFLU_RS05870	0.86	+0.1
1,316,883	-		PFLU_RS05870	0.86	-1.6
1,316,883	-		PFLU_RS05870	0.86	+0.4
1,316,947	+				-1.3
1,316,947	+				+0.9
1,316,959	-				-1.5
1,316,959	-				-0.9
1,316,964	+				+0.3
1,316,964	+				+0.4
1,316,964	+				-0.1
1,316,964	+				+0.5
1,316,964	+				-0.6
1,316,964	+				-1.3
1,316,965	-				-1.1
1,316,965	-				-0.5
1,316,965	-				+0.8
1,316,965	-				+0.3
1,316,965	-				+0.3
1,317,072	+		PFLU_RS05875	0.25	-0.6
1,317,180	+		PFLU_RS05875	0.46	-1.1
1,317,181	-		PFLU_RS05875	0.47	-1.1
1,317,181	-		PFLU_RS05875	0.47	-1.2
1,317,425	+				+0.8
1,317,425	+				+1.3
1,317,425	+				-0.0
1,317,425	+				-0.1
1,317,425	+				+1.0
1,317,425	+				-0.5
1,317,425	+				-0.6
1,317,425	+				-1.2
1,317,425	+				-0.1
1,317,425	+				+0.1
1,317,425	+				-1.1
1,317,426	-				+1.1
1,317,426	-				-0.1
1,317,426	-				+1.1
1,317,426	-				-0.2
1,317,426	-				-1.1
1,317,426	-				+1.5
1,317,426	-				+0.9
1,317,426	-				-1.1
1,317,426	-				+0.7
1,317,492	+				-0.6
1,317,492	+				-0.5
1,317,492	+				-0.1
1,317,492	+				-0.2
1,317,493	-				-0.5
1,317,497	+				+0.9
1,317,498	-				-2.2
1,317,680	+		PFLU_RS05880	0.30	+2.3
1,317,681	-		PFLU_RS05880	0.30	+0.4
1,317,689	+		PFLU_RS05880	0.32	+0.4
1,317,689	+		PFLU_RS05880	0.32	+0.7
1,317,689	+		PFLU_RS05880	0.32	+0.1
1,317,690	-		PFLU_RS05880	0.32	+0.1
1,317,690	-		PFLU_RS05880	0.32	-0.5
1,317,877	+		PFLU_RS05880	0.69	-0.5
1,317,878	-		PFLU_RS05880	0.69	+0.4
1,317,882	+		PFLU_RS05880	0.70	+2.0
1,317,882	+		PFLU_RS05880	0.70	-1.1
1,317,882	+		PFLU_RS05880	0.70	-0.3
1,317,882	+		PFLU_RS05880	0.70	-0.9
1,317,882	+		PFLU_RS05880	0.70	-1.1
1,317,882	+		PFLU_RS05880	0.70	+0.1
1,317,882	+		PFLU_RS05880	0.70	+0.3
1,317,882	+		PFLU_RS05880	0.70	+0.5
1,317,882	+		PFLU_RS05880	0.70	+0.0
1,317,883	-		PFLU_RS05880	0.70	+0.9
1,317,883	-		PFLU_RS05880	0.70	-0.4
1,317,883	-		PFLU_RS05880	0.70	-0.3
1,318,056	+				+0.2
1,318,057	-				-1.8
1,318,057	-				-2.3
1,318,064	-				-0.5
1,318,068	-				-1.1
1,318,068	-				-1.1
1,318,093	+				+0.3
1,318,100	+				-1.2
1,318,100	+				-1.1
1,318,100	+				+0.6
1,318,100	+				-0.2
1,318,100	+				-1.6
1,318,100	+				-1.9
1,318,100	+				+3.1
1,318,100	+				-1.4
1,318,101	-				-1.1
1,318,101	-				+0.4
1,318,101	-				+0.1
1,318,101	-				-1.6
1,318,101	-				-1.1
1,318,101	-				-1.2
1,318,101	-				+0.7
1,318,101	-				-1.3
1,318,101	-				-1.9
1,318,114	-				-0.5
1,318,189	-				-1.8
1,318,195	+				-0.8
1,318,305	-		PFLU_RS05885	0.18	-2.2
1,318,418	+		PFLU_RS05885	0.29	-1.3
1,318,419	-		PFLU_RS05885	0.29	+1.5
1,318,419	-		PFLU_RS05885	0.29	+2.1