Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05110

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
1,139,995	-		PFLU_RS05105	0.17	-0.4
1,139,995	-		PFLU_RS05105	0.17	-0.3
1,139,995	-		PFLU_RS05105	0.17	-0.7
1,140,015	+		PFLU_RS05105	0.19	+0.1
1,140,015	+		PFLU_RS05105	0.19	-0.2
1,140,016	-		PFLU_RS05105	0.19	-0.0
1,140,016	-		PFLU_RS05105	0.19	+1.1
1,140,281	+		PFLU_RS05105	0.52	-0.7
1,140,282	-		PFLU_RS05105	0.52	-0.3
1,140,282	-		PFLU_RS05105	0.52	-2.5
1,140,320	-		PFLU_RS05105	0.57	+1.5
1,140,691	+				+1.2
1,140,742	+				+0.4
1,140,742	+				+0.5
1,140,742	+				-0.6
1,140,742	+				+0.9
1,140,742	+				+1.0
1,140,742	+				-0.9
1,140,742	+				-0.2
1,140,742	+				+0.2
1,140,742	+				+0.0
1,140,742	+				+1.1
1,140,742	+				-2.4
1,140,742	+				+0.1
1,140,742	+				+0.6
1,140,742	+				+0.1
1,140,742	+				+1.2
1,140,742	+				-0.3
1,140,742	+				-0.1
1,140,742	+				+0.5
1,140,742	+				-1.8
1,140,742	+				+1.5
1,140,742	+				-0.3
1,140,743	-				-0.2
1,140,743	-				-0.4
1,140,743	-				-1.6
1,140,743	-				-1.8
1,140,743	-				+1.4
1,140,743	-				+0.5
1,140,743	-				-0.5
1,140,743	-				-0.7
1,140,743	-				-0.8
1,140,743	-				-0.7
1,140,743	-				+0.6
1,140,743	-				+0.4
1,140,743	-				+0.2
1,140,743	-				+0.4
1,140,743	-				+0.1
1,140,743	-				+0.2
1,140,743	-				+0.3
1,140,743	-				-0.6
1,140,743	-				-0.3
1,140,743	-				-1.5
1,140,743	-				-1.6
1,140,743	-				-0.7
1,140,743	-				-0.7
1,140,743	-				-0.2
1,140,773	+				-0.3
1,140,783	+				-0.1
1,140,783	+				+1.7
1,140,783	+				+0.3
1,140,810	+				-1.0
1,140,810	+				-0.4
1,140,810	+				+0.5
1,140,810	+				-2.5
1,140,810	+				+0.3
1,140,811	-				+0.3
1,140,811	-				+0.4
1,140,811	-				+0.9
1,140,811	-				-0.5
1,140,811	-				-0.2
1,140,811	-				-1.2
1,140,811	-				+0.3
1,140,811	-				+0.4
1,140,811	-				-0.2
1,140,812	+				-1.0
1,140,812	+				-0.2
1,140,812	+				-0.5
1,140,812	+				-0.5
1,140,812	+				-1.2
1,140,812	+				-0.1
1,140,812	+				+1.0
1,140,812	+				-0.2
1,140,812	+				+1.0
1,140,812	+				-1.0
1,140,812	+				-0.9
1,140,813	-				-2.5
1,140,813	-				+0.5
1,140,813	-				-0.0
1,140,813	-				+2.4
1,140,813	-				-1.7
1,140,940	+				-1.1
1,140,940	+				-1.0
1,140,940	+				+0.3
1,140,941	-				-0.6
1,140,941	-				-0.3
1,140,941	-				-0.4
1,140,941	-				+0.3
1,140,977	+		PFLU_RS05110	0.12	-0.6
1,140,978	-		PFLU_RS05110	0.12	+0.2
1,141,043	+		PFLU_RS05110	0.19	+0.9
1,141,043	+		PFLU_RS05110	0.19	+0.9
1,141,043	+		PFLU_RS05110	0.19	+0.8
1,141,043	+		PFLU_RS05110	0.19	-1.7
1,141,043	+		PFLU_RS05110	0.19	-0.0
1,141,043	+		PFLU_RS05110	0.19	+0.5
1,141,043	+		PFLU_RS05110	0.19	-1.4
1,141,043	+		PFLU_RS05110	0.19	-0.4
1,141,043	+		PFLU_RS05110	0.19	+0.0
1,141,043	+		PFLU_RS05110	0.19	+0.5
1,141,043	+		PFLU_RS05110	0.19	+1.2
1,141,043	+		PFLU_RS05110	0.19	+0.2
1,141,043	+		PFLU_RS05110	0.19	-0.8
1,141,043	+		PFLU_RS05110	0.19	+0.7
1,141,043	+		PFLU_RS05110	0.19	+0.2
1,141,043	+		PFLU_RS05110	0.19	+0.6
1,141,044	-		PFLU_RS05110	0.19	-1.1
1,141,044	-		PFLU_RS05110	0.19	+0.4
1,141,044	-		PFLU_RS05110	0.19	-1.3
1,141,044	-		PFLU_RS05110	0.19	+1.5
1,141,044	-		PFLU_RS05110	0.19	+0.2
1,141,044	-		PFLU_RS05110	0.19	-0.5
1,141,044	-		PFLU_RS05110	0.19	-0.1
1,141,044	-		PFLU_RS05110	0.19	-0.3
1,141,044	-		PFLU_RS05110	0.19	-0.2
1,141,044	-		PFLU_RS05110	0.19	-1.5
1,141,044	-		PFLU_RS05110	0.19	-2.4
1,141,044	-		PFLU_RS05110	0.19	+2.4
1,141,150	+		PFLU_RS05110	0.29	-0.3
1,141,151	-		PFLU_RS05110	0.29	+0.3
1,141,172	+		PFLU_RS05110	0.31	-0.3
1,141,172	+		PFLU_RS05110	0.31	-1.3
1,141,172	+		PFLU_RS05110	0.31	+0.1
1,141,172	+		PFLU_RS05110	0.31	-0.2
1,141,172	+		PFLU_RS05110	0.31	+0.2
1,141,172	+		PFLU_RS05110	0.31	-0.2
1,141,172	+		PFLU_RS05110	0.31	+1.6
1,141,172	+		PFLU_RS05110	0.31	-0.1
1,141,172	+		PFLU_RS05110	0.31	+0.1
1,141,172	+		PFLU_RS05110	0.31	-0.3
1,141,173	-		PFLU_RS05110	0.32	-2.2
1,141,173	-		PFLU_RS05110	0.32	+0.9
1,141,173	-		PFLU_RS05110	0.32	-0.2
1,141,173	-		PFLU_RS05110	0.32	-3.4
1,141,344	+		PFLU_RS05110	0.48	+1.9
1,141,344	+		PFLU_RS05110	0.48	-1.3
1,141,344	+		PFLU_RS05110	0.48	-0.9
1,141,344	+		PFLU_RS05110	0.48	+0.1
1,141,344	+		PFLU_RS05110	0.48	+0.5
1,141,344	+		PFLU_RS05110	0.48	+1.4
1,141,344	+		PFLU_RS05110	0.48	+0.8
1,141,344	+		PFLU_RS05110	0.48	+0.4
1,141,344	+		PFLU_RS05110	0.48	-0.8
1,141,344	+		PFLU_RS05110	0.48	-0.3
1,141,344	+		PFLU_RS05110	0.48	+1.4
1,141,344	+		PFLU_RS05110	0.48	+0.3
1,141,344	+		PFLU_RS05110	0.48	-0.4
1,141,344	+		PFLU_RS05110	0.48	-0.5
1,141,345	-		PFLU_RS05110	0.48	+0.2
1,141,345	-		PFLU_RS05110	0.48	+0.4
1,141,345	-		PFLU_RS05110	0.48	+0.4
1,141,345	-		PFLU_RS05110	0.48	-0.1
1,141,345	-		PFLU_RS05110	0.48	+0.1
1,141,345	-		PFLU_RS05110	0.48	-0.0
1,141,345	-		PFLU_RS05110	0.48	+0.5
1,141,345	-		PFLU_RS05110	0.48	-1.0
1,141,670	+		PFLU_RS05110	0.80	-0.4
1,141,670	+		PFLU_RS05110	0.80	-0.2
1,141,682	+		PFLU_RS05110	0.81	+0.5
1,141,682	+		PFLU_RS05110	0.81	-0.6
1,141,682	+		PFLU_RS05110	0.81	-0.1
1,141,682	+		PFLU_RS05110	0.81	+1.3
1,141,682	+		PFLU_RS05110	0.81	+0.3
1,141,682	+		PFLU_RS05110	0.81	-1.6
1,141,682	+		PFLU_RS05110	0.81	-1.8
1,141,683	-		PFLU_RS05110	0.82	-0.4
1,141,683	-		PFLU_RS05110	0.82	-0.4
1,141,683	-		PFLU_RS05110	0.82	-1.4
1,141,683	-		PFLU_RS05110	0.82	+1.2
1,141,683	-		PFLU_RS05110	0.82	-1.1
1,141,709	+		PFLU_RS05110	0.84	-1.5
1,141,709	+		PFLU_RS05110	0.84	-0.5
1,141,709	+		PFLU_RS05110	0.84	-0.3
1,141,709	+		PFLU_RS05110	0.84	+0.3
1,141,710	-		PFLU_RS05110	0.84	-0.0
1,141,710	-		PFLU_RS05110	0.84	-1.8
1,141,710	-		PFLU_RS05110	0.84	-1.5
1,141,710	-		PFLU_RS05110	0.84	+0.3
1,141,710	-		PFLU_RS05110	0.84	-1.9
1,141,761	+		PFLU_RS05110	0.89	-1.9
1,141,761	+		PFLU_RS05110	0.89	-0.2
1,141,761	+		PFLU_RS05110	0.89	+0.4
1,141,761	+		PFLU_RS05110	0.89	+0.9
1,141,761	+		PFLU_RS05110	0.89	-0.5
1,141,761	+		PFLU_RS05110	0.89	+0.1
1,141,761	+		PFLU_RS05110	0.89	+0.5
1,141,762	-		PFLU_RS05110	0.89	+1.2
1,141,762	-		PFLU_RS05110	0.89	-2.4
1,141,862	+				-0.9
1,141,863	-				-0.2
1,141,879	+				-1.1
1,141,879	+				+1.1
1,141,879	+				-0.3
1,141,879	+				-0.7
1,141,879	+				+0.8
1,141,880	-				-0.5
1,141,880	-				+0.4
1,141,880	-				+0.2
1,141,880	-				-1.7
1,141,927	-				-0.2
1,141,927	-				-1.0
1,141,991	+		PFLU_RS05115	0.25	-0.1
1,141,991	+		PFLU_RS05115	0.25	-2.5
1,141,991	+		PFLU_RS05115	0.25	-0.7
1,141,991	+		PFLU_RS05115	0.25	+0.5
1,141,991	+		PFLU_RS05115	0.25	-0.3
1,141,991	+		PFLU_RS05115	0.25	+2.0
1,141,991	+		PFLU_RS05115	0.25	+0.3
1,141,991	+		PFLU_RS05115	0.25	-0.8
1,141,992	-		PFLU_RS05115	0.26	-0.6
1,141,992	-		PFLU_RS05115	0.26	+0.2
1,141,992	-		PFLU_RS05115	0.26	+0.8
1,141,992	-		PFLU_RS05115	0.26	-1.1
1,141,992	-		PFLU_RS05115	0.26	+0.1
1,141,992	-		PFLU_RS05115	0.26	+0.1
1,141,992	-		PFLU_RS05115	0.26	+0.3
1,142,013	+		PFLU_RS05115	0.34	-0.9
1,142,013	+		PFLU_RS05115	0.34	-1.6
1,142,013	+		PFLU_RS05115	0.34	-1.8
1,142,013	+		PFLU_RS05115	0.34	+0.4
1,142,013	+		PFLU_RS05115	0.34	-1.4
1,142,013	+		PFLU_RS05115	0.34	+0.4
1,142,013	+		PFLU_RS05115	0.34	+0.5
1,142,013	+		PFLU_RS05115	0.34	+0.3
1,142,013	+		PFLU_RS05115	0.34	-0.3
1,142,013	+		PFLU_RS05115	0.34	+0.4
1,142,013	+		PFLU_RS05115	0.34	-0.5
1,142,013	+		PFLU_RS05115	0.34	+0.9
1,142,013	+		PFLU_RS05115	0.34	-0.5
1,142,013	+		PFLU_RS05115	0.34	+0.3
1,142,013	+		PFLU_RS05115	0.34	+1.0
1,142,013	+		PFLU_RS05115	0.34	-2.5
1,142,013	+		PFLU_RS05115	0.34	-0.5
1,142,014	-		PFLU_RS05115	0.34	+0.7
1,142,014	-		PFLU_RS05115	0.34	+1.5
1,142,014	-		PFLU_RS05115	0.34	-1.7
1,142,014	-		PFLU_RS05115	0.34	+0.5
1,142,014	-		PFLU_RS05115	0.34	-1.8
1,142,014	-		PFLU_RS05115	0.34	-1.2
1,142,014	-		PFLU_RS05115	0.34	+0.3
1,142,014	-		PFLU_RS05115	0.34	+0.7
1,142,014	-		PFLU_RS05115	0.34	+0.8
1,142,014	-		PFLU_RS05115	0.34	-0.3
1,142,014	-		PFLU_RS05115	0.34	-0.5
1,142,014	-		PFLU_RS05115	0.34	-0.8
1,142,014	-		PFLU_RS05115	0.34	+0.5
1,142,014	-		PFLU_RS05115	0.34	-1.3
1,142,014	-		PFLU_RS05115	0.34	+0.4
1,142,128	+		PFLU_RS05115	0.78	+0.1
1,142,128	+		PFLU_RS05115	0.78	-0.1
1,142,129	-		PFLU_RS05115	0.78	+1.0
1,142,129	-		PFLU_RS05115	0.78	+0.7
1,142,129	-		PFLU_RS05115	0.78	-0.2
1,142,129	-		PFLU_RS05115	0.78	+0.1
1,142,129	-		PFLU_RS05115	0.78	+1.3
1,142,166	+				+1.2
1,142,168	+				+0.1
1,142,168	+				-0.4
1,142,168	+				-1.3
1,142,168	+				+0.0
1,142,168	+				+0.3
1,142,169	-				+0.8
1,142,169	-				-0.4
1,142,169	-				-0.5
1,142,169	-				+0.4
1,142,169	-				-0.3
1,142,169	-				-0.2
1,142,169	-				-1.0
1,142,210	+				-0.7
1,142,210	+				-0.2
1,142,210	+				+0.2
1,142,210	+				+0.4
1,142,211	-				-1.0
1,142,211	-				+0.2
1,142,211	-				-1.0
1,142,227	+				+0.5
1,142,238	+				-0.5
1,142,241	-				-0.8
1,142,254	+				-1.6
1,142,277	+				-0.2
1,142,289	-				-0.0
1,142,289	-				-0.6
1,142,293	+				+0.5
1,142,293	+				+0.5
1,142,293	+				+0.3
1,142,293	+				-1.5
1,142,293	+				-0.4
1,142,294	-				+0.2
1,142,294	-				+0.4
1,142,294	-				+0.5
1,142,304	+				-0.3
1,142,304	+				+0.1
1,142,304	+				+0.2
1,142,305	-				-2.2
1,142,305	-				-0.4
1,142,305	-				-0.4
1,142,305	-				-0.3
1,142,315	+				-0.1
1,142,315	+				+1.1
1,142,315	+				+0.0
1,142,315	+				-0.8
1,142,315	+				-2.4
1,142,315	+				-0.9
1,142,315	+				-0.3
1,142,315	+				-0.2
1,142,316	-				-1.0
1,142,316	-				+0.7
1,142,316	-				+0.8
1,142,361	-				-0.8
1,142,361	-				+0.7
1,142,418	+				-1.9
1,142,418	+				-0.3
1,142,418	+				-0.5
1,142,418	+				-1.9
1,142,418	+				-0.3
1,142,418	+				+0.1
1,142,418	+				-1.0
1,142,418	+				+2.1
1,142,418	+				-1.1
1,142,418	+				-0.7
1,142,429	+				-0.0
1,142,429	+				-0.8
1,142,430	-				+0.7
1,142,430	-				+0.9
1,142,430	-				-1.2
1,142,430	-				+0.2
1,142,430	-				-1.8
1,142,430	-				-1.0
1,142,543	+				-2.5
1,142,543	+				-0.3
1,142,543	+				-0.9
1,142,544	-				+0.9
1,142,544	-				+0.6
1,142,544	-				-0.9
1,142,544	-				+0.4
1,142,544	-				+0.3
1,142,544	-				+1.2
1,142,544	-				+0.2
1,142,544	-				+1.3
1,142,544	-				-2.1
1,142,595	+				-0.1
1,142,595	+				+0.4
1,142,595	+				-1.2
1,142,595	+				-0.6
1,142,595	+				-0.3
1,142,595	+				+0.7
1,142,595	+				+0.0
1,142,595	+				-1.6
1,142,595	+				-0.4
1,142,595	+				-0.8
1,142,595	+				-1.8
1,142,595	+				-1.7
1,142,595	+				-0.3
1,142,595	+				+1.0
1,142,595	+				+0.8
1,142,595	+				+0.5
1,142,595	+				-0.4
1,142,595	+				-0.9
1,142,595	+				+0.4
1,142,595	+				+0.8
1,142,596	-				-0.4
1,142,596	-				-0.1
1,142,596	-				+0.4
1,142,596	-				-1.9
1,142,596	-				-0.2
1,142,596	-				-0.9
1,142,596	-				-1.7
1,142,596	-				+2.1
1,142,596	-				-2.9
1,142,596	-				+0.5
1,142,596	-				-1.2
1,142,596	-				+0.5
1,142,596	-				-0.7
1,142,596	-				+0.1
1,142,596	-				+0.4
1,142,596	-				-0.3
1,142,596	-				-0.6
1,142,596	-				-0.2
1,142,596	-				-0.2
1,142,596	-				+0.8
1,142,645	+		PFLU_RS05120	0.18	-0.1
1,142,646	-		PFLU_RS05120	0.18	+0.2
1,142,646	-		PFLU_RS05120	0.18	-1.6
1,142,725	+		PFLU_RS05120	0.34	-0.8
1,142,726	-		PFLU_RS05120	0.34	+0.5
1,142,726	-		PFLU_RS05120	0.34	-0.3
1,142,726	-		PFLU_RS05120	0.34	-1.0
1,142,726	-		PFLU_RS05120	0.34	+0.4
1,142,759	+		PFLU_RS05120	0.41	-0.6
1,142,759	+		PFLU_RS05120	0.41	+0.3
1,142,759	+		PFLU_RS05120	0.41	+0.2
1,142,759	+		PFLU_RS05120	0.41	+0.0
1,142,760	-		PFLU_RS05120	0.41	+0.5
1,142,760	-		PFLU_RS05120	0.41	-2.8
1,142,760	-		PFLU_RS05120	0.41	+1.5
1,142,760	-		PFLU_RS05120	0.41	-0.8
1,142,760	-		PFLU_RS05120	0.41	-0.5
1,142,789	+		PFLU_RS05120	0.47	+0.5
1,142,789	+		PFLU_RS05120	0.47	-1.0
1,142,789	+		PFLU_RS05120	0.47	-0.7
1,142,790	-		PFLU_RS05120	0.47	+0.7
1,142,828	+		PFLU_RS05120	0.55	-1.3
1,142,828	+		PFLU_RS05120	0.55	-0.2
1,142,828	+		PFLU_RS05120	0.55	+0.5
1,142,828	+		PFLU_RS05120	0.55	-0.6
1,142,828	+		PFLU_RS05120	0.55	-0.2
1,142,828	+		PFLU_RS05120	0.55	-0.5
1,142,828	+		PFLU_RS05120	0.55	+1.3
1,142,828	+		PFLU_RS05120	0.55	-1.7
1,142,828	+		PFLU_RS05120	0.55	+0.5
1,142,829	-		PFLU_RS05120	0.55	+0.8
1,142,829	-		PFLU_RS05120	0.55	-0.3
1,142,829	-		PFLU_RS05120	0.55	+0.3
1,142,829	-		PFLU_RS05120	0.55	-0.9
1,142,829	-		PFLU_RS05120	0.55	+1.9
1,142,829	-		PFLU_RS05120	0.55	+0.6
1,142,829	-		PFLU_RS05120	0.55	+0.3
1,142,829	-		PFLU_RS05120	0.55	-0.7
1,142,829	-		PFLU_RS05120	0.55	+1.1
1,142,829	-		PFLU_RS05120	0.55	-2.2
1,142,829	-		PFLU_RS05120	0.55	+1.1
1,142,829	-		PFLU_RS05120	0.55	+0.2
1,142,829	-		PFLU_RS05120	0.55	+0.6
1,142,829	-		PFLU_RS05120	0.55	+0.4