Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03865 and PFLU_RS03870 are separated by 149 nucleotides PFLU_RS03870 and PFLU_RS03875 overlap by 4 nucleotides PFLU_RS03875 and PFLU_RS03880 are separated by 146 nucleotides
PFLU_RS03865: PFLU_RS03865 - outer membrane protein assembly factor BamD, at 879,474 to 880,499
_RS03865
PFLU_RS03870: PFLU_RS03870 - 23S rRNA pseudouridine(1911/1915/1917) synthase RluD, at 880,649 to 881,611
_RS03870
PFLU_RS03875: PFLU_RS03875 - peptidoglycan editing factor PgeF, at 881,608 to 882,333
_RS03875
PFLU_RS03880: PFLU_RS03880 - ATP-dependent chaperone ClpB, at 882,480 to 885,044
_RS03880
Position (kb) 880
881
882 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 879.697 kb on + strand, within PFLU_RS03865 at 879.697 kb on + strand, within PFLU_RS03865 at 879.697 kb on + strand, within PFLU_RS03865 at 879.697 kb on + strand, within PFLU_RS03865 at 879.697 kb on + strand, within PFLU_RS03865 at 879.697 kb on + strand, within PFLU_RS03865 at 879.697 kb on + strand, within PFLU_RS03865 at 879.697 kb on + strand, within PFLU_RS03865 at 879.697 kb on + strand, within PFLU_RS03865 at 879.698 kb on - strand, within PFLU_RS03865 at 879.698 kb on - strand, within PFLU_RS03865 at 879.698 kb on - strand, within PFLU_RS03865 at 879.698 kb on - strand, within PFLU_RS03865 at 879.698 kb on - strand, within PFLU_RS03865 at 879.698 kb on - strand, within PFLU_RS03865 at 879.698 kb on - strand, within PFLU_RS03865 at 879.698 kb on - strand, within PFLU_RS03865 at 879.778 kb on + strand, within PFLU_RS03865 at 879.779 kb on - strand, within PFLU_RS03865 at 879.779 kb on - strand, within PFLU_RS03865 at 879.779 kb on - strand, within PFLU_RS03865 at 880.516 kb on - strand at 880.551 kb on - strand at 880.551 kb on - strand at 880.551 kb on - strand at 880.551 kb on - strand at 880.628 kb on + strand at 880.629 kb on - strand at 880.639 kb on + strand at 880.639 kb on + strand at 880.639 kb on + strand at 880.640 kb on - strand at 880.657 kb on + strand at 880.728 kb on + strand at 880.729 kb on - strand at 880.729 kb on - strand at 880.818 kb on + strand, within PFLU_RS03870 at 880.818 kb on + strand, within PFLU_RS03870 at 880.818 kb on + strand, within PFLU_RS03870 at 880.818 kb on + strand, within PFLU_RS03870 at 880.818 kb on + strand, within PFLU_RS03870 at 880.818 kb on + strand, within PFLU_RS03870 at 880.818 kb on + strand, within PFLU_RS03870 at 880.818 kb on + strand, within PFLU_RS03870 at 880.818 kb on + strand, within PFLU_RS03870 at 880.819 kb on - strand, within PFLU_RS03870 at 880.819 kb on - strand, within PFLU_RS03870 at 880.819 kb on - strand, within PFLU_RS03870 at 880.819 kb on - strand, within PFLU_RS03870 at 880.819 kb on - strand, within PFLU_RS03870 at 880.819 kb on - strand, within PFLU_RS03870 at 880.819 kb on - strand, within PFLU_RS03870 at 880.819 kb on - strand, within PFLU_RS03870 at 880.819 kb on - strand, within PFLU_RS03870 at 880.819 kb on - strand, within PFLU_RS03870 at 880.819 kb on - strand, within PFLU_RS03870 at 880.819 kb on - strand, within PFLU_RS03870 at 880.819 kb on - strand, within PFLU_RS03870 at 880.819 kb on - strand, within PFLU_RS03870 at 880.907 kb on + strand, within PFLU_RS03870 at 880.907 kb on + strand, within PFLU_RS03870 at 880.907 kb on + strand, within PFLU_RS03870 at 880.908 kb on - strand, within PFLU_RS03870 at 880.908 kb on - strand, within PFLU_RS03870 at 880.908 kb on - strand, within PFLU_RS03870 at 881.156 kb on + strand, within PFLU_RS03870 at 881.156 kb on + strand, within PFLU_RS03870 at 881.156 kb on + strand, within PFLU_RS03870 at 881.156 kb on + strand, within PFLU_RS03870 at 881.156 kb on + strand, within PFLU_RS03870 at 881.156 kb on + strand, within PFLU_RS03870 at 881.156 kb on + strand, within PFLU_RS03870 at 881.157 kb on - strand, within PFLU_RS03870 at 881.157 kb on - strand, within PFLU_RS03870 at 881.157 kb on - strand, within PFLU_RS03870 at 881.157 kb on - strand, within PFLU_RS03870 at 881.157 kb on - strand, within PFLU_RS03870 at 881.157 kb on - strand, within PFLU_RS03870 at 881.157 kb on - strand, within PFLU_RS03870 at 881.157 kb on - strand, within PFLU_RS03870 at 881.157 kb on - strand, within PFLU_RS03870 at 881.239 kb on + strand, within PFLU_RS03870 at 881.239 kb on + strand, within PFLU_RS03870 at 881.239 kb on + strand, within PFLU_RS03870 at 881.240 kb on - strand, within PFLU_RS03870 at 881.240 kb on - strand, within PFLU_RS03870 at 881.240 kb on - strand, within PFLU_RS03870 at 881.279 kb on + strand, within PFLU_RS03870 at 881.362 kb on + strand, within PFLU_RS03870 at 881.363 kb on - strand, within PFLU_RS03870 at 881.372 kb on - strand, within PFLU_RS03870 at 881.372 kb on - strand, within PFLU_RS03870 at 881.402 kb on + strand, within PFLU_RS03870 at 881.443 kb on + strand, within PFLU_RS03870 at 881.443 kb on + strand, within PFLU_RS03870 at 881.443 kb on + strand, within PFLU_RS03870 at 881.443 kb on + strand, within PFLU_RS03870 at 881.443 kb on + strand, within PFLU_RS03870 at 881.443 kb on + strand, within PFLU_RS03870 at 881.443 kb on + strand, within PFLU_RS03870 at 881.443 kb on + strand, within PFLU_RS03870 at 881.443 kb on + strand, within PFLU_RS03870 at 881.443 kb on + strand, within PFLU_RS03870 at 881.444 kb on - strand, within PFLU_RS03870 at 881.444 kb on - strand, within PFLU_RS03870 at 881.444 kb on - strand, within PFLU_RS03870 at 881.444 kb on - strand, within PFLU_RS03870 at 881.521 kb on + strand at 881.624 kb on + strand at 881.625 kb on - strand at 881.625 kb on - strand at 881.625 kb on - strand at 881.667 kb on + strand at 881.667 kb on + strand at 881.667 kb on + strand at 881.777 kb on + strand, within PFLU_RS03875 at 881.777 kb on + strand, within PFLU_RS03875 at 881.777 kb on + strand, within PFLU_RS03875 at 881.777 kb on + strand, within PFLU_RS03875 at 881.777 kb on + strand, within PFLU_RS03875 at 881.777 kb on + strand, within PFLU_RS03875 at 881.778 kb on - strand, within PFLU_RS03875 at 881.778 kb on - strand, within PFLU_RS03875 at 881.778 kb on - strand, within PFLU_RS03875 at 881.778 kb on - strand, within PFLU_RS03875 at 881.778 kb on - strand, within PFLU_RS03875 at 881.778 kb on - strand, within PFLU_RS03875 at 881.778 kb on - strand, within PFLU_RS03875 at 881.778 kb on - strand, within PFLU_RS03875 at 881.778 kb on - strand, within PFLU_RS03875 at 881.786 kb on + strand, within PFLU_RS03875 at 881.786 kb on + strand, within PFLU_RS03875 at 881.786 kb on + strand, within PFLU_RS03875 at 881.786 kb on + strand, within PFLU_RS03875 at 881.786 kb on + strand, within PFLU_RS03875 at 881.786 kb on + strand, within PFLU_RS03875 at 881.786 kb on + strand, within PFLU_RS03875 at 881.786 kb on + strand, within PFLU_RS03875 at 881.786 kb on + strand, within PFLU_RS03875 at 881.786 kb on + strand, within PFLU_RS03875 at 881.786 kb on + strand, within PFLU_RS03875 at 881.786 kb on + strand, within PFLU_RS03875 at 881.786 kb on + strand, within PFLU_RS03875 at 881.786 kb on + strand, within PFLU_RS03875 at 881.786 kb on + strand, within PFLU_RS03875 at 881.787 kb on - strand, within PFLU_RS03875 at 881.787 kb on - strand, within PFLU_RS03875 at 881.787 kb on - strand, within PFLU_RS03875 at 881.787 kb on - strand, within PFLU_RS03875 at 881.787 kb on - strand, within PFLU_RS03875 at 881.787 kb on - strand, within PFLU_RS03875 at 881.787 kb on - strand, within PFLU_RS03875 at 881.787 kb on - strand, within PFLU_RS03875 at 881.787 kb on - strand, within PFLU_RS03875 at 881.787 kb on - strand, within PFLU_RS03875 at 881.787 kb on - strand, within PFLU_RS03875 at 881.787 kb on - strand, within PFLU_RS03875 at 881.787 kb on - strand, within PFLU_RS03875 at 881.787 kb on - strand, within PFLU_RS03875 at 881.787 kb on - strand, within PFLU_RS03875 at 881.787 kb on - strand, within PFLU_RS03875 at 881.787 kb on - strand, within PFLU_RS03875 at 882.041 kb on + strand, within PFLU_RS03875 at 882.041 kb on + strand, within PFLU_RS03875 at 882.041 kb on + strand, within PFLU_RS03875 at 882.041 kb on + strand, within PFLU_RS03875 at 882.041 kb on + strand, within PFLU_RS03875 at 882.041 kb on + strand, within PFLU_RS03875 at 882.041 kb on + strand, within PFLU_RS03875 at 882.041 kb on + strand, within PFLU_RS03875 at 882.041 kb on + strand, within PFLU_RS03875 at 882.041 kb on + strand, within PFLU_RS03875 at 882.041 kb on + strand, within PFLU_RS03875 at 882.041 kb on + strand, within PFLU_RS03875 at 882.042 kb on - strand, within PFLU_RS03875 at 882.042 kb on - strand, within PFLU_RS03875 at 882.042 kb on - strand, within PFLU_RS03875 at 882.042 kb on - strand, within PFLU_RS03875 at 882.042 kb on - strand, within PFLU_RS03875 at 882.042 kb on - strand, within PFLU_RS03875 at 882.042 kb on - strand, within PFLU_RS03875 at 882.042 kb on - strand, within PFLU_RS03875 at 882.042 kb on - strand, within PFLU_RS03875 at 882.042 kb on - strand, within PFLU_RS03875 at 882.042 kb on - strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.184 kb on + strand, within PFLU_RS03875 at 882.185 kb on - strand, within PFLU_RS03875 at 882.185 kb on - strand, within PFLU_RS03875 at 882.185 kb on - strand, within PFLU_RS03875 at 882.185 kb on - strand, within PFLU_RS03875 at 882.185 kb on - strand, within PFLU_RS03875 at 882.185 kb on - strand, within PFLU_RS03875 at 882.185 kb on - strand, within PFLU_RS03875 at 882.185 kb on - strand, within PFLU_RS03875 at 882.185 kb on - strand, within PFLU_RS03875 at 882.185 kb on - strand, within PFLU_RS03875 at 882.185 kb on - strand, within PFLU_RS03875 at 882.185 kb on - strand, within PFLU_RS03875 at 882.185 kb on - strand, within PFLU_RS03875 at 882.185 kb on - strand, within PFLU_RS03875 at 882.185 kb on - strand, within PFLU_RS03875 at 882.185 kb on - strand, within PFLU_RS03875 at 882.185 kb on - strand, within PFLU_RS03875 at 882.185 kb on - strand, within PFLU_RS03875 at 882.185 kb on - strand, within PFLU_RS03875 at 882.186 kb on + strand, within PFLU_RS03875 at 882.186 kb on + strand, within PFLU_RS03875 at 882.186 kb on + strand, within PFLU_RS03875 at 882.186 kb on + strand, within PFLU_RS03875 at 882.186 kb on + strand, within PFLU_RS03875 at 882.186 kb on + strand, within PFLU_RS03875 at 882.186 kb on + strand, within PFLU_RS03875 at 882.186 kb on + strand, within PFLU_RS03875 at 882.186 kb on + strand, within PFLU_RS03875 at 882.186 kb on + strand, within PFLU_RS03875 at 882.187 kb on - strand, within PFLU_RS03875 at 882.187 kb on - strand, within PFLU_RS03875 at 882.187 kb on - strand, within PFLU_RS03875 at 882.187 kb on - strand, within PFLU_RS03875 at 882.187 kb on - strand, within PFLU_RS03875 at 882.187 kb on - strand, within PFLU_RS03875 at 882.232 kb on + strand, within PFLU_RS03875 at 882.232 kb on + strand, within PFLU_RS03875 at 882.232 kb on + strand, within PFLU_RS03875 at 882.232 kb on + strand, within PFLU_RS03875 at 882.232 kb on + strand, within PFLU_RS03875 at 882.233 kb on - strand, within PFLU_RS03875 at 882.233 kb on - strand, within PFLU_RS03875 at 882.233 kb on - strand, within PFLU_RS03875 at 882.233 kb on - strand, within PFLU_RS03875 at 882.277 kb on + strand at 882.315 kb on + strand at 882.315 kb on + strand at 882.315 kb on + strand at 882.315 kb on + strand at 882.315 kb on + strand at 882.316 kb on - strand at 882.316 kb on - strand at 882.316 kb on - strand at 882.331 kb on + strand at 882.332 kb on - strand at 882.407 kb on + strand at 882.407 kb on + strand at 882.407 kb on + strand at 882.407 kb on + strand at 882.407 kb on + strand at 882.407 kb on + strand at 882.407 kb on + strand at 882.407 kb on + strand at 882.407 kb on + strand at 882.407 kb on + strand at 882.407 kb on + strand at 882.407 kb on + strand at 882.407 kb on + strand at 882.407 kb on + strand at 882.407 kb on + strand at 882.407 kb on + strand at 882.407 kb on + strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.408 kb on - strand at 882.409 kb on + strand at 882.416 kb on - strand at 882.416 kb on - strand at 882.416 kb on - strand at 882.446 kb on + strand at 882.446 kb on + strand at 882.446 kb on + strand at 882.446 kb on + strand at 882.446 kb on + strand at 882.446 kb on + strand at 882.447 kb on - strand at 882.447 kb on - strand at 882.447 kb on - strand at 882.447 kb on - strand at 882.447 kb on - strand at 882.447 kb on - strand at 882.448 kb on + strand at 882.448 kb on + strand at 882.448 kb on + strand at 882.449 kb on - strand at 882.449 kb on - strand at 882.449 kb on - strand at 882.449 kb on - strand at 882.478 kb on + strand at 882.478 kb on + strand at 882.478 kb on + strand at 882.478 kb on + strand at 882.479 kb on - strand at 882.479 kb on - strand at 882.479 kb on - strand at 882.479 kb on - strand at 882.485 kb on + strand at 882.485 kb on + strand at 882.485 kb on + strand at 882.485 kb on + strand at 882.486 kb on - strand at 882.486 kb on - strand at 882.486 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs remove 879,697 + PFLU_RS03865 0.22 -0.2 879,697 + PFLU_RS03865 0.22 +0.6 879,697 + PFLU_RS03865 0.22 -0.4 879,697 + PFLU_RS03865 0.22 -1.0 879,697 + PFLU_RS03865 0.22 +0.4 879,697 + PFLU_RS03865 0.22 -1.3 879,697 + PFLU_RS03865 0.22 -0.6 879,697 + PFLU_RS03865 0.22 +0.4 879,697 + PFLU_RS03865 0.22 +2.3 879,698 - PFLU_RS03865 0.22 +0.8 879,698 - PFLU_RS03865 0.22 +1.1 879,698 - PFLU_RS03865 0.22 -0.4 879,698 - PFLU_RS03865 0.22 +0.7 879,698 - PFLU_RS03865 0.22 -0.8 879,698 - PFLU_RS03865 0.22 -1.2 879,698 - PFLU_RS03865 0.22 +0.4 879,698 - PFLU_RS03865 0.22 +0.1 879,778 + PFLU_RS03865 0.30 +0.9 879,779 - PFLU_RS03865 0.30 +1.1 879,779 - PFLU_RS03865 0.30 -0.3 879,779 - PFLU_RS03865 0.30 -1.4 880,516 - -0.4 880,551 - -1.3 880,551 - +1.3 880,551 - +0.2 880,551 - -0.1 880,628 + -0.1 880,629 - -1.1 880,639 + -1.5 880,639 + +0.9 880,639 + +1.0 880,640 - +1.9 880,657 + -2.2 880,728 + -0.8 880,729 - -0.1 880,729 - -0.1 880,818 + PFLU_RS03870 0.18 +0.5 880,818 + PFLU_RS03870 0.18 +0.5 880,818 + PFLU_RS03870 0.18 -0.5 880,818 + PFLU_RS03870 0.18 -0.1 880,818 + PFLU_RS03870 0.18 +0.3 880,818 + PFLU_RS03870 0.18 -1.5 880,818 + PFLU_RS03870 0.18 +0.2 880,818 + PFLU_RS03870 0.18 +0.8 880,818 + PFLU_RS03870 0.18 -0.8 880,819 - PFLU_RS03870 0.18 -1.8 880,819 - PFLU_RS03870 0.18 -1.1 880,819 - PFLU_RS03870 0.18 +1.5 880,819 - PFLU_RS03870 0.18 -0.1 880,819 - PFLU_RS03870 0.18 -0.5 880,819 - PFLU_RS03870 0.18 -0.3 880,819 - PFLU_RS03870 0.18 -1.7 880,819 - PFLU_RS03870 0.18 -2.2 880,819 - PFLU_RS03870 0.18 -1.1 880,819 - PFLU_RS03870 0.18 -1.1 880,819 - PFLU_RS03870 0.18 -0.3 880,819 - PFLU_RS03870 0.18 +0.9 880,819 - PFLU_RS03870 0.18 -0.1 880,819 - PFLU_RS03870 0.18 -1.3 880,907 + PFLU_RS03870 0.27 -1.2 880,907 + PFLU_RS03870 0.27 -0.6 880,907 + PFLU_RS03870 0.27 -0.1 880,908 - PFLU_RS03870 0.27 -1.7 880,908 - PFLU_RS03870 0.27 +0.1 880,908 - PFLU_RS03870 0.27 -0.7 881,156 + PFLU_RS03870 0.53 -2.4 881,156 + PFLU_RS03870 0.53 -0.5 881,156 + PFLU_RS03870 0.53 -0.2 881,156 + PFLU_RS03870 0.53 -0.7 881,156 + PFLU_RS03870 0.53 -1.5 881,156 + PFLU_RS03870 0.53 -2.5 881,156 + PFLU_RS03870 0.53 -0.5 881,157 - PFLU_RS03870 0.53 -0.9 881,157 - PFLU_RS03870 0.53 +1.5 881,157 - PFLU_RS03870 0.53 -3.1 881,157 - PFLU_RS03870 0.53 -1.3 881,157 - PFLU_RS03870 0.53 -2.5 881,157 - PFLU_RS03870 0.53 -0.8 881,157 - PFLU_RS03870 0.53 -1.3 881,157 - PFLU_RS03870 0.53 -1.5 881,157 - PFLU_RS03870 0.53 -2.2 881,239 + PFLU_RS03870 0.61 -0.8 881,239 + PFLU_RS03870 0.61 -1.8 881,239 + PFLU_RS03870 0.61 -1.1 881,240 - PFLU_RS03870 0.61 -1.4 881,240 - PFLU_RS03870 0.61 -1.3 881,240 - PFLU_RS03870 0.61 -1.1 881,279 + PFLU_RS03870 0.65 -0.7 881,362 + PFLU_RS03870 0.74 -1.8 881,363 - PFLU_RS03870 0.74 -2.1 881,372 - PFLU_RS03870 0.75 -0.1 881,372 - PFLU_RS03870 0.75 +0.5 881,402 + PFLU_RS03870 0.78 +0.5 881,443 + PFLU_RS03870 0.82 -1.5 881,443 + PFLU_RS03870 0.82 -0.4 881,443 + PFLU_RS03870 0.82 -1.5 881,443 + PFLU_RS03870 0.82 -0.5 881,443 + PFLU_RS03870 0.82 +0.2 881,443 + PFLU_RS03870 0.82 -1.8 881,443 + PFLU_RS03870 0.82 -1.1 881,443 + PFLU_RS03870 0.82 +0.9 881,443 + PFLU_RS03870 0.82 -3.0 881,443 + PFLU_RS03870 0.82 -1.1 881,444 - 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Or see this region's nucleotide sequence