Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03165 and PFLU_RS03170 are separated by 1 nucleotides PFLU_RS03170 and PFLU_RS03175 are separated by 10 nucleotides PFLU_RS03175 and PFLU_RS03180 overlap by 4 nucleotides
PFLU_RS03165: PFLU_RS03165 - type II secretion system F family protein, at 732,104 to 732,991
_RS03165
PFLU_RS03170: PFLU_RS03170 - type II secretion system F family protein, at 732,993 to 733,874
_RS03170
PFLU_RS03175: PFLU_RS03175 - CpaF family protein, at 733,885 to 735,156
_RS03175
PFLU_RS03180: PFLU_RS03180 - hypothetical protein, at 735,153 to 736,346
_RS03180
Position (kb) 733
734
735
736 Strain fitness (log2 ratio) -1
0
1
2
3 at 733.022 kb on + strand at 733.022 kb on + strand at 733.022 kb on + strand at 733.023 kb on - strand at 733.023 kb on - strand at 733.102 kb on + strand, within PFLU_RS03170 at 733.102 kb on + strand, within PFLU_RS03170 at 733.102 kb on + strand, within PFLU_RS03170 at 733.103 kb on - strand, within PFLU_RS03170 at 733.103 kb on - strand, within PFLU_RS03170 at 733.103 kb on - strand, within PFLU_RS03170 at 733.126 kb on + strand, within PFLU_RS03170 at 733.126 kb on + strand, within PFLU_RS03170 at 733.127 kb on - strand, within PFLU_RS03170 at 733.127 kb on - strand, within PFLU_RS03170 at 733.162 kb on + strand, within PFLU_RS03170 at 733.162 kb on + strand, within PFLU_RS03170 at 733.163 kb on - strand, within PFLU_RS03170 at 733.163 kb on - strand, within PFLU_RS03170 at 733.163 kb on - strand, within PFLU_RS03170 at 733.327 kb on + strand, within PFLU_RS03170 at 733.327 kb on + strand, within PFLU_RS03170 at 733.328 kb on - strand, within PFLU_RS03170 at 733.443 kb on + strand, within PFLU_RS03170 at 733.488 kb on - strand, within PFLU_RS03170 at 733.488 kb on - strand, within PFLU_RS03170 at 733.850 kb on + strand at 733.850 kb on + strand at 733.850 kb on + strand at 733.851 kb on - strand at 733.851 kb on - strand at 733.851 kb on - strand at 733.851 kb on - strand at 733.851 kb on - strand at 733.886 kb on + strand at 733.887 kb on - strand at 733.887 kb on - strand at 733.986 kb on + strand at 733.986 kb on + strand at 733.987 kb on - strand at 733.987 kb on - strand at 733.987 kb on - strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.997 kb on + strand at 733.998 kb on - strand at 733.998 kb on - strand at 733.998 kb on - strand at 733.998 kb on - strand at 733.998 kb on - strand at 733.998 kb on - strand at 733.998 kb on - strand at 733.998 kb on - strand at 733.998 kb on - strand at 733.998 kb on - strand at 733.998 kb on - strand at 733.998 kb on - strand at 733.998 kb on - strand at 733.998 kb on - strand at 734.061 kb on + strand, within PFLU_RS03175 at 734.061 kb on + strand, within PFLU_RS03175 at 734.062 kb on - strand, within PFLU_RS03175 at 734.062 kb on - strand, within PFLU_RS03175 at 734.062 kb on - strand, within PFLU_RS03175 at 734.076 kb on + strand, within PFLU_RS03175 at 734.076 kb on + strand, within PFLU_RS03175 at 734.077 kb on - strand, within PFLU_RS03175 at 734.077 kb on - strand, within PFLU_RS03175 at 734.077 kb on - strand, within PFLU_RS03175 at 734.461 kb on - strand, within PFLU_RS03175 at 734.461 kb on - strand, within PFLU_RS03175 at 734.821 kb on - strand, within PFLU_RS03175 at 734.942 kb on + strand, within PFLU_RS03175 at 734.943 kb on - strand, within PFLU_RS03175 at 734.975 kb on + strand, within PFLU_RS03175 at 734.975 kb on + strand, within PFLU_RS03175 at 734.975 kb on + strand, within PFLU_RS03175 at 734.975 kb on + strand, within PFLU_RS03175 at 734.975 kb on + strand, within PFLU_RS03175 at 734.976 kb on - strand, within PFLU_RS03175 at 734.976 kb on - strand, within PFLU_RS03175 at 734.976 kb on - strand, within PFLU_RS03175 at 735.068 kb on + strand at 735.068 kb on + strand at 735.068 kb on + strand at 735.068 kb on + strand at 735.068 kb on + strand at 735.068 kb on + strand at 735.068 kb on + strand at 735.069 kb on - strand at 735.069 kb on - strand at 735.069 kb on - strand at 735.069 kb on - strand at 735.069 kb on - strand at 735.069 kb on - strand at 735.069 kb on - strand at 735.307 kb on - strand, within PFLU_RS03180 at 735.406 kb on + strand, within PFLU_RS03180 at 735.406 kb on + strand, within PFLU_RS03180 at 735.406 kb on + strand, within PFLU_RS03180 at 735.407 kb on - strand, within PFLU_RS03180 at 735.407 kb on - strand, within PFLU_RS03180 at 735.407 kb on - strand, within PFLU_RS03180 at 735.407 kb on - strand, within PFLU_RS03180 at 735.450 kb on - strand, within PFLU_RS03180 at 735.677 kb on - strand, within PFLU_RS03180 at 735.734 kb on + strand, within PFLU_RS03180 at 735.735 kb on - strand, within PFLU_RS03180 at 735.806 kb on + strand, within PFLU_RS03180 at 735.807 kb on - strand, within PFLU_RS03180 at 736.021 kb on + strand, within PFLU_RS03180 at 736.021 kb on + strand, within PFLU_RS03180
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs remove 733,022 + +1.3 733,022 + +0.4 733,022 + +2.5 733,023 - +1.7 733,023 - -0.1 733,102 + PFLU_RS03170 0.12 +0.5 733,102 + PFLU_RS03170 0.12 +0.7 733,102 + PFLU_RS03170 0.12 +1.0 733,103 - PFLU_RS03170 0.12 +1.2 733,103 - PFLU_RS03170 0.12 +1.6 733,103 - PFLU_RS03170 0.12 +3.2 733,126 + PFLU_RS03170 0.15 +1.2 733,126 + PFLU_RS03170 0.15 +0.0 733,127 - PFLU_RS03170 0.15 +1.0 733,127 - PFLU_RS03170 0.15 +1.6 733,162 + PFLU_RS03170 0.19 +2.5 733,162 + PFLU_RS03170 0.19 +2.2 733,163 - PFLU_RS03170 0.19 +1.3 733,163 - PFLU_RS03170 0.19 +2.1 733,163 - PFLU_RS03170 0.19 +1.8 733,327 + PFLU_RS03170 0.38 -0.5 733,327 + PFLU_RS03170 0.38 +1.1 733,328 - PFLU_RS03170 0.38 +2.0 733,443 + PFLU_RS03170 0.51 +1.1 733,488 - PFLU_RS03170 0.56 +1.4 733,488 - PFLU_RS03170 0.56 +2.1 733,850 + +1.9 733,850 + -0.3 733,850 + +0.6 733,851 - +1.8 733,851 - +0.7 733,851 - +0.5 733,851 - +1.4 733,851 - +2.8 733,886 + +1.5 733,887 - -1.2 733,887 - -0.3 733,986 + +1.5 733,986 + +0.8 733,987 - -0.1 733,987 - -1.7 733,987 - +1.2 733,997 + +1.9 733,997 + +2.6 733,997 + +0.8 733,997 + +0.8 733,997 + +1.0 733,997 + +2.2 733,997 + +0.9 733,997 + +1.3 733,997 + +0.9 733,997 + +2.1 733,997 + +1.5 733,997 + -0.1 733,997 + +1.7 733,997 + +2.6 733,997 + +1.0 733,997 + +1.4 733,997 + +0.5 733,997 + +1.5 733,997 + -0.2 733,997 + +1.9 733,997 + +0.9 733,997 + +0.5 733,998 - +1.8 733,998 - +2.2 733,998 - +1.2 733,998 - +1.3 733,998 - +2.8 733,998 - +1.4 733,998 - +1.3 733,998 - +1.6 733,998 - +1.1 733,998 - +1.2 733,998 - +1.8 733,998 - +1.1 733,998 - +2.5 733,998 - +1.0 734,061 + PFLU_RS03175 0.14 +1.6 734,061 + PFLU_RS03175 0.14 +1.3 734,062 - PFLU_RS03175 0.14 +1.1 734,062 - PFLU_RS03175 0.14 +1.9 734,062 - PFLU_RS03175 0.14 +0.9 734,076 + PFLU_RS03175 0.15 +3.0 734,076 + PFLU_RS03175 0.15 +1.5 734,077 - PFLU_RS03175 0.15 +1.1 734,077 - PFLU_RS03175 0.15 +1.7 734,077 - PFLU_RS03175 0.15 +1.3 734,461 - PFLU_RS03175 0.45 +0.7 734,461 - PFLU_RS03175 0.45 +0.4 734,821 - PFLU_RS03175 0.74 +1.5 734,942 + PFLU_RS03175 0.83 +2.2 734,943 - PFLU_RS03175 0.83 +1.5 734,975 + PFLU_RS03175 0.86 +1.3 734,975 + PFLU_RS03175 0.86 +1.4 734,975 + PFLU_RS03175 0.86 +1.8 734,975 + PFLU_RS03175 0.86 -0.9 734,975 + PFLU_RS03175 0.86 +0.8 734,976 - PFLU_RS03175 0.86 -0.3 734,976 - PFLU_RS03175 0.86 +1.7 734,976 - PFLU_RS03175 0.86 +2.6 735,068 + +2.0 735,068 + +1.6 735,068 + +1.6 735,068 + +0.7 735,068 + +0.9 735,068 + +1.1 735,068 + +1.8 735,069 - +1.8 735,069 - +1.2 735,069 - +1.7 735,069 - +1.1 735,069 - +1.9 735,069 - +1.0 735,069 - +2.2 735,307 - PFLU_RS03180 0.13 +1.3 735,406 + PFLU_RS03180 0.21 +2.0 735,406 + PFLU_RS03180 0.21 +1.0 735,406 + PFLU_RS03180 0.21 +1.1 735,407 - PFLU_RS03180 0.21 +1.2 735,407 - PFLU_RS03180 0.21 +2.1 735,407 - PFLU_RS03180 0.21 +1.1 735,407 - PFLU_RS03180 0.21 +0.0 735,450 - PFLU_RS03180 0.25 +1.9 735,677 - PFLU_RS03180 0.44 +0.7 735,734 + PFLU_RS03180 0.49 +2.0 735,735 - PFLU_RS03180 0.49 +1.8 735,806 + PFLU_RS03180 0.55 +0.8 735,807 - PFLU_RS03180 0.55 +0.9 736,021 + PFLU_RS03180 0.73 +1.9 736,021 + PFLU_RS03180 0.73 +1.8
Or see this region's nucleotide sequence