Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03155 and PFLU_RS03160 are separated by 3 nucleotides PFLU_RS03160 and PFLU_RS03165 are separated by 10 nucleotides PFLU_RS03165 and PFLU_RS03170 are separated by 1 nucleotides PFLU_RS03170 and PFLU_RS03175 are separated by 10 nucleotides
PFLU_RS03155: PFLU_RS03155 - DUF3613 domain-containing protein, at 731,080 to 731,349
_RS03155
PFLU_RS03160: PFLU_RS03160 - tetratricopeptide repeat protein, at 731,353 to 732,093
_RS03160
PFLU_RS03165: PFLU_RS03165 - type II secretion system F family protein, at 732,104 to 732,991
_RS03165
PFLU_RS03170: PFLU_RS03170 - type II secretion system F family protein, at 732,993 to 733,874
_RS03170
PFLU_RS03175: PFLU_RS03175 - CpaF family protein, at 733,885 to 735,156
_RS03175
Position (kb) 732
733 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 731.336 kb on + strand at 731.336 kb on + strand at 731.336 kb on + strand at 731.336 kb on + strand at 731.336 kb on + strand at 731.336 kb on + strand at 731.336 kb on + strand at 731.336 kb on + strand at 731.336 kb on + strand at 731.336 kb on + strand at 731.336 kb on + strand at 731.336 kb on + strand at 731.336 kb on + strand at 731.336 kb on + strand at 731.336 kb on + strand at 731.336 kb on + strand at 731.336 kb on + strand at 731.336 kb on + strand at 731.337 kb on - strand at 731.337 kb on - strand at 731.337 kb on - strand at 731.337 kb on - strand at 731.337 kb on - strand at 731.337 kb on - strand at 731.337 kb on - strand at 731.337 kb on - strand at 731.337 kb on - strand at 731.337 kb on - strand at 731.341 kb on + strand at 731.341 kb on + strand at 731.341 kb on + strand at 731.341 kb on + strand at 731.341 kb on + strand at 731.341 kb on + strand at 731.341 kb on + strand at 731.341 kb on + strand at 731.341 kb on + strand at 731.341 kb on + strand at 731.341 kb on + strand at 731.341 kb on + strand at 731.341 kb on + strand at 731.341 kb on + strand at 731.342 kb on - strand at 731.342 kb on - strand at 731.342 kb on - strand at 731.342 kb on - strand at 731.342 kb on - strand at 731.342 kb on - strand at 731.342 kb on - strand at 731.368 kb on + strand at 731.368 kb on + strand at 731.377 kb on + strand at 731.378 kb on - strand at 731.546 kb on + strand, within PFLU_RS03160 at 731.546 kb on + strand, within PFLU_RS03160 at 731.546 kb on + strand, within PFLU_RS03160 at 731.546 kb on + strand, within PFLU_RS03160 at 731.546 kb on + strand, within PFLU_RS03160 at 731.654 kb on + strand, within PFLU_RS03160 at 731.654 kb on + strand, within PFLU_RS03160 at 731.654 kb on + strand, within PFLU_RS03160 at 731.655 kb on - strand, within PFLU_RS03160 at 731.655 kb on - strand, within PFLU_RS03160 at 731.718 kb on + strand, within PFLU_RS03160 at 731.719 kb on - strand, within PFLU_RS03160 at 731.719 kb on - strand, within PFLU_RS03160 at 731.816 kb on + strand, within PFLU_RS03160 at 731.817 kb on - strand, within PFLU_RS03160 at 731.817 kb on - strand, within PFLU_RS03160 at 731.817 kb on - strand, within PFLU_RS03160 at 731.852 kb on + strand, within PFLU_RS03160 at 731.852 kb on + strand, within PFLU_RS03160 at 732.105 kb on + strand at 732.105 kb on + strand at 732.105 kb on + strand at 732.225 kb on + strand, within PFLU_RS03165 at 732.225 kb on + strand, within PFLU_RS03165 at 732.225 kb on + strand, within PFLU_RS03165 at 732.225 kb on + strand, within PFLU_RS03165 at 732.225 kb on + strand, within PFLU_RS03165 at 732.226 kb on - strand, within PFLU_RS03165 at 732.452 kb on + strand, within PFLU_RS03165 at 732.453 kb on - strand, within PFLU_RS03165 at 732.453 kb on - strand, within PFLU_RS03165 at 732.453 kb on - strand, within PFLU_RS03165 at 732.477 kb on - strand, within PFLU_RS03165 at 732.477 kb on - strand, within PFLU_RS03165 at 732.477 kb on - strand, within PFLU_RS03165 at 732.477 kb on - strand, within PFLU_RS03165 at 732.701 kb on + strand, within PFLU_RS03165 at 732.715 kb on + strand, within PFLU_RS03165 at 733.022 kb on + strand at 733.022 kb on + strand at 733.022 kb on + strand at 733.023 kb on - strand at 733.023 kb on - strand at 733.102 kb on + strand, within PFLU_RS03170 at 733.102 kb on + strand, within PFLU_RS03170 at 733.102 kb on + strand, within PFLU_RS03170 at 733.103 kb on - strand, within PFLU_RS03170 at 733.103 kb on - strand, within PFLU_RS03170 at 733.103 kb on - strand, within PFLU_RS03170 at 733.126 kb on + strand, within PFLU_RS03170 at 733.126 kb on + strand, within PFLU_RS03170 at 733.127 kb on - strand, within PFLU_RS03170 at 733.127 kb on - strand, within PFLU_RS03170 at 733.162 kb on + strand, within PFLU_RS03170 at 733.162 kb on + strand, within PFLU_RS03170 at 733.163 kb on - strand, within PFLU_RS03170 at 733.163 kb on - strand, within PFLU_RS03170 at 733.163 kb on - strand, within PFLU_RS03170 at 733.327 kb on + strand, within PFLU_RS03170 at 733.327 kb on + strand, within PFLU_RS03170 at 733.328 kb on - strand, within PFLU_RS03170 at 733.443 kb on + strand, within PFLU_RS03170 at 733.488 kb on - strand, within PFLU_RS03170 at 733.488 kb on - strand, within PFLU_RS03170 at 733.850 kb on + strand at 733.850 kb on + strand at 733.850 kb on + strand at 733.851 kb on - strand at 733.851 kb on - strand at 733.851 kb on - strand at 733.851 kb on - strand at 733.851 kb on - strand at 733.886 kb on + strand at 733.887 kb on - strand at 733.887 kb on - strand at 733.986 kb on + strand at 733.986 kb on + strand at 733.987 kb on - strand at 733.987 kb on - strand at 733.987 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs remove 731,336 + +1.2 731,336 + +0.7 731,336 + +4.3 731,336 + +3.0 731,336 + +1.9 731,336 + +2.1 731,336 + +0.9 731,336 + +2.4 731,336 + +1.2 731,336 + +1.7 731,336 + +0.6 731,336 + +1.7 731,336 + +1.0 731,336 + +2.0 731,336 + +0.0 731,336 + +1.6 731,336 + +0.9 731,336 + +1.5 731,337 - +0.5 731,337 - +1.2 731,337 - +0.5 731,337 - +1.6 731,337 - +2.1 731,337 - +0.2 731,337 - +0.8 731,337 - +0.2 731,337 - +2.9 731,337 - +1.1 731,341 + +1.7 731,341 + +1.5 731,341 + +0.8 731,341 + +0.9 731,341 + +2.0 731,341 + +1.0 731,341 + +1.7 731,341 + +1.4 731,341 + +1.1 731,341 + -1.2 731,341 + +0.9 731,341 + +0.5 731,341 + +1.9 731,341 + +1.5 731,342 - +2.1 731,342 - +2.7 731,342 - +1.3 731,342 - +4.1 731,342 - +1.1 731,342 - +1.4 731,342 - +1.1 731,368 + -0.5 731,368 + +1.8 731,377 + +0.2 731,378 - +0.8 731,546 + PFLU_RS03160 0.26 +1.9 731,546 + PFLU_RS03160 0.26 +1.4 731,546 + PFLU_RS03160 0.26 +1.1 731,546 + PFLU_RS03160 0.26 +1.8 731,546 + PFLU_RS03160 0.26 +2.8 731,654 + PFLU_RS03160 0.41 +2.0 731,654 + PFLU_RS03160 0.41 +0.7 731,654 + PFLU_RS03160 0.41 +0.7 731,655 - PFLU_RS03160 0.41 +1.5 731,655 - PFLU_RS03160 0.41 +1.9 731,718 + PFLU_RS03160 0.49 +1.2 731,719 - PFLU_RS03160 0.49 +1.0 731,719 - PFLU_RS03160 0.49 +1.5 731,816 + PFLU_RS03160 0.62 +1.4 731,817 - PFLU_RS03160 0.63 +0.6 731,817 - PFLU_RS03160 0.63 +2.7 731,817 - PFLU_RS03160 0.63 +1.4 731,852 + PFLU_RS03160 0.67 -0.9 731,852 + PFLU_RS03160 0.67 +1.7 732,105 + +3.8 732,105 + -0.0 732,105 + +1.6 732,225 + PFLU_RS03165 0.14 +0.8 732,225 + PFLU_RS03165 0.14 +1.7 732,225 + PFLU_RS03165 0.14 +1.2 732,225 + PFLU_RS03165 0.14 +1.2 732,225 + PFLU_RS03165 0.14 +0.4 732,226 - PFLU_RS03165 0.14 +1.1 732,452 + PFLU_RS03165 0.39 +1.5 732,453 - PFLU_RS03165 0.39 -0.1 732,453 - PFLU_RS03165 0.39 +0.8 732,453 - PFLU_RS03165 0.39 +2.2 732,477 - PFLU_RS03165 0.42 +1.5 732,477 - PFLU_RS03165 0.42 +1.4 732,477 - PFLU_RS03165 0.42 +2.9 732,477 - PFLU_RS03165 0.42 +1.3 732,701 + PFLU_RS03165 0.67 +1.7 732,715 + PFLU_RS03165 0.69 +2.0 733,022 + +1.3 733,022 + +0.4 733,022 + +2.5 733,023 - +1.7 733,023 - -0.1 733,102 + PFLU_RS03170 0.12 +0.5 733,102 + PFLU_RS03170 0.12 +0.7 733,102 + PFLU_RS03170 0.12 +1.0 733,103 - PFLU_RS03170 0.12 +1.2 733,103 - PFLU_RS03170 0.12 +1.6 733,103 - PFLU_RS03170 0.12 +3.2 733,126 + PFLU_RS03170 0.15 +1.2 733,126 + PFLU_RS03170 0.15 +0.0 733,127 - PFLU_RS03170 0.15 +1.0 733,127 - PFLU_RS03170 0.15 +1.6 733,162 + PFLU_RS03170 0.19 +2.5 733,162 + PFLU_RS03170 0.19 +2.2 733,163 - PFLU_RS03170 0.19 +1.3 733,163 - PFLU_RS03170 0.19 +2.1 733,163 - PFLU_RS03170 0.19 +1.8 733,327 + PFLU_RS03170 0.38 -0.5 733,327 + PFLU_RS03170 0.38 +1.1 733,328 - PFLU_RS03170 0.38 +2.0 733,443 + PFLU_RS03170 0.51 +1.1 733,488 - PFLU_RS03170 0.56 +1.4 733,488 - PFLU_RS03170 0.56 +2.1 733,850 + +1.9 733,850 + -0.3 733,850 + +0.6 733,851 - +1.8 733,851 - +0.7 733,851 - +0.5 733,851 - +1.4 733,851 - +2.8 733,886 + +1.5 733,887 - -1.2 733,887 - -0.3 733,986 + +1.5 733,986 + +0.8 733,987 - -0.1 733,987 - -1.7 733,987 - +1.2
Or see this region's nucleotide sequence