Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS03140

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS03135 and PFLU_RS03140 overlap by 4 nucleotidesPFLU_RS03140 and PFLU_RS03145 are separated by 72 nucleotidesPFLU_RS03145 and PFLU_RS03150 are separated by 126 nucleotides PFLU_RS03135: PFLU_RS03135 - PAS domain-containing sensor histidine kinase, at 726,452 to 729,190 _RS03135 PFLU_RS03140: PFLU_RS03140 - pilus assembly protein, at 729,187 to 729,630 _RS03140 PFLU_RS03145: PFLU_RS03145 - peptidase A24, at 729,703 to 730,152 _RS03145 PFLU_RS03150: PFLU_RS03150 - response regulator transcription factor, at 730,279 to 731,067 _RS03150 Position (kb) 729 730Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 728.213 kb on + strand, within PFLU_RS03135at 728.213 kb on + strand, within PFLU_RS03135at 728.213 kb on + strand, within PFLU_RS03135at 728.213 kb on + strand, within PFLU_RS03135at 728.214 kb on - strand, within PFLU_RS03135at 728.214 kb on - strand, within PFLU_RS03135at 728.214 kb on - strand, within PFLU_RS03135at 728.214 kb on - strand, within PFLU_RS03135at 728.214 kb on - strand, within PFLU_RS03135at 728.409 kb on + strand, within PFLU_RS03135at 728.409 kb on + strand, within PFLU_RS03135at 728.409 kb on + strand, within PFLU_RS03135at 728.409 kb on + strand, within PFLU_RS03135at 728.409 kb on + strand, within PFLU_RS03135at 728.409 kb on + strand, within PFLU_RS03135at 728.409 kb on + strand, within PFLU_RS03135at 728.410 kb on - strand, within PFLU_RS03135at 728.410 kb on - strand, within PFLU_RS03135at 728.410 kb on - strand, within PFLU_RS03135at 728.410 kb on - strand, within PFLU_RS03135at 728.455 kb on - strand, within PFLU_RS03135at 728.488 kb on + strand, within PFLU_RS03135at 728.489 kb on - strand, within PFLU_RS03135at 728.616 kb on + strand, within PFLU_RS03135at 728.616 kb on + strand, within PFLU_RS03135at 728.617 kb on - strand, within PFLU_RS03135at 728.617 kb on - strand, within PFLU_RS03135at 728.617 kb on - strand, within PFLU_RS03135at 728.617 kb on - strand, within PFLU_RS03135at 728.625 kb on + strand, within PFLU_RS03135at 728.625 kb on + strand, within PFLU_RS03135at 728.625 kb on + strand, within PFLU_RS03135at 728.625 kb on + strand, within PFLU_RS03135at 728.625 kb on + strand, within PFLU_RS03135at 728.625 kb on + strand, within PFLU_RS03135at 728.626 kb on - strand, within PFLU_RS03135at 728.626 kb on - strand, within PFLU_RS03135at 729.064 kb on + strandat 729.064 kb on + strandat 729.176 kb on - strandat 729.278 kb on + strand, within PFLU_RS03140at 729.278 kb on + strand, within PFLU_RS03140at 729.278 kb on + strand, within PFLU_RS03140at 729.278 kb on + strand, within PFLU_RS03140at 729.279 kb on - strand, within PFLU_RS03140at 729.279 kb on - strand, within PFLU_RS03140at 729.297 kb on - strand, within PFLU_RS03140at 729.329 kb on + strand, within PFLU_RS03140at 729.329 kb on + strand, within PFLU_RS03140at 729.329 kb on + strand, within PFLU_RS03140at 729.329 kb on + strand, within PFLU_RS03140at 729.329 kb on + strand, within PFLU_RS03140at 729.330 kb on - strand, within PFLU_RS03140at 729.330 kb on - strand, within PFLU_RS03140at 729.330 kb on - strand, within PFLU_RS03140at 729.330 kb on - strand, within PFLU_RS03140at 729.427 kb on - strand, within PFLU_RS03140at 729.431 kb on + strand, within PFLU_RS03140at 729.431 kb on + strand, within PFLU_RS03140at 729.431 kb on + strand, within PFLU_RS03140at 729.431 kb on + strand, within PFLU_RS03140at 729.431 kb on + strand, within PFLU_RS03140at 729.431 kb on + strand, within PFLU_RS03140at 729.431 kb on + strand, within PFLU_RS03140at 729.431 kb on + strand, within PFLU_RS03140at 729.431 kb on + strand, within PFLU_RS03140at 729.431 kb on + strand, within PFLU_RS03140at 729.432 kb on - strand, within PFLU_RS03140at 729.432 kb on - strand, within PFLU_RS03140at 729.432 kb on - strand, within PFLU_RS03140at 729.432 kb on - strand, within PFLU_RS03140at 729.432 kb on - strand, within PFLU_RS03140at 729.432 kb on - strand, within PFLU_RS03140at 729.432 kb on - strand, within PFLU_RS03140at 729.432 kb on - strand, within PFLU_RS03140at 729.432 kb on - strand, within PFLU_RS03140at 729.432 kb on - strand, within PFLU_RS03140at 729.432 kb on - strand, within PFLU_RS03140at 729.432 kb on - strand, within PFLU_RS03140at 729.528 kb on + strand, within PFLU_RS03140at 729.528 kb on + strand, within PFLU_RS03140at 729.528 kb on + strand, within PFLU_RS03140at 729.528 kb on + strand, within PFLU_RS03140at 729.529 kb on - strand, within PFLU_RS03140at 729.529 kb on - strand, within PFLU_RS03140at 729.529 kb on - strand, within PFLU_RS03140at 729.529 kb on - strand, within PFLU_RS03140at 729.529 kb on - strand, within PFLU_RS03140at 729.530 kb on + strand, within PFLU_RS03140at 729.530 kb on + strand, within PFLU_RS03140at 729.530 kb on + strand, within PFLU_RS03140at 729.530 kb on + strand, within PFLU_RS03140at 729.530 kb on + strand, within PFLU_RS03140at 729.530 kb on + strand, within PFLU_RS03140at 729.530 kb on + strand, within PFLU_RS03140at 729.530 kb on + strand, within PFLU_RS03140at 729.530 kb on + strand, within PFLU_RS03140at 729.530 kb on + strand, within PFLU_RS03140at 729.530 kb on + strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.545 kb on + strand, within PFLU_RS03140at 729.545 kb on + strand, within PFLU_RS03140at 729.546 kb on - strand, within PFLU_RS03140at 729.546 kb on - strand, within PFLU_RS03140at 729.546 kb on - strand, within PFLU_RS03140at 729.546 kb on - strand, within PFLU_RS03140at 729.587 kb on - strandat 729.641 kb on - strandat 729.641 kb on - strandat 729.652 kb on + strandat 729.652 kb on + strandat 729.655 kb on + strandat 729.655 kb on + strandat 729.655 kb on + strandat 729.655 kb on + strandat 729.655 kb on + strandat 729.655 kb on + strandat 729.655 kb on + strandat 729.655 kb on + strandat 729.655 kb on + strandat 729.655 kb on + strandat 729.655 kb on + strandat 729.656 kb on - strandat 729.656 kb on - strandat 729.656 kb on - strandat 729.656 kb on - strandat 729.656 kb on - strandat 729.670 kb on + strandat 729.670 kb on + strandat 729.670 kb on + strandat 729.670 kb on + strandat 729.670 kb on + strandat 729.671 kb on - strandat 729.671 kb on - strandat 729.671 kb on - strandat 729.671 kb on - strandat 729.671 kb on - strandat 729.671 kb on - strandat 729.671 kb on - strandat 729.671 kb on - strandat 729.701 kb on - strandat 729.722 kb on + strandat 729.722 kb on + strandat 729.723 kb on - strandat 729.723 kb on - strandat 729.817 kb on + strand, within PFLU_RS03145at 729.817 kb on + strand, within PFLU_RS03145at 729.817 kb on + strand, within PFLU_RS03145at 729.818 kb on - strand, within PFLU_RS03145at 729.818 kb on - strand, within PFLU_RS03145at 729.818 kb on - strand, within PFLU_RS03145at 729.818 kb on - strand, within PFLU_RS03145at 729.818 kb on - strand, within PFLU_RS03145at 729.837 kb on + strand, within PFLU_RS03145at 729.837 kb on + strand, within PFLU_RS03145at 729.837 kb on + strand, within PFLU_RS03145at 729.837 kb on + strand, within PFLU_RS03145at 729.838 kb on - strand, within PFLU_RS03145at 729.838 kb on - strand, within PFLU_RS03145at 729.838 kb on - strand, within PFLU_RS03145at 730.036 kb on - strand, within PFLU_RS03145at 730.112 kb on + strandat 730.113 kb on - strandat 730.113 kb on - strandat 730.132 kb on + strandat 730.132 kb on + strandat 730.133 kb on - strandat 730.133 kb on - strandat 730.150 kb on + strandat 730.168 kb on - strandat 730.168 kb on - strandat 730.168 kb on - strandat 730.177 kb on + strandat 730.177 kb on + strandat 730.177 kb on + strandat 730.177 kb on + strandat 730.177 kb on + strandat 730.177 kb on + strandat 730.177 kb on + strandat 730.178 kb on - strandat 730.178 kb on - strandat 730.178 kb on - strandat 730.178 kb on - strandat 730.178 kb on - strandat 730.178 kb on - strandat 730.178 kb on - strandat 730.178 kb on - strandat 730.178 kb on - strandat 730.178 kb on - strandat 730.192 kb on + strandat 730.192 kb on + strandat 730.192 kb on + strandat 730.192 kb on + strandat 730.193 kb on - strandat 730.193 kb on - strandat 730.193 kb on - strandat 730.193 kb on - strandat 730.193 kb on - strandat 730.193 kb on - strandat 730.193 kb on - strandat 730.198 kb on + strandat 730.198 kb on + strandat 730.198 kb on + strandat 730.198 kb on + strandat 730.198 kb on + strandat 730.198 kb on + strandat 730.198 kb on + strandat 730.198 kb on + strandat 730.198 kb on + strandat 730.198 kb on + strandat 730.198 kb on + strandat 730.198 kb on + strandat 730.198 kb on + strandat 730.199 kb on - strandat 730.199 kb on - strandat 730.199 kb on - strandat 730.199 kb on - strandat 730.199 kb on - strandat 730.199 kb on - strandat 730.199 kb on - strandat 730.199 kb on - strandat 730.199 kb on - strandat 730.199 kb on - strandat 730.204 kb on + strandat 730.205 kb on - strandat 730.219 kb on + strandat 730.220 kb on - strandat 730.273 kb on + strandat 730.274 kb on - strandat 730.289 kb on + strandat 730.289 kb on + strandat 730.289 kb on + strandat 730.290 kb on - strandat 730.290 kb on - strandat 730.290 kb on - strandat 730.290 kb on - strandat 730.290 kb on - strandat 730.290 kb on - strandat 730.373 kb on - strand, within PFLU_RS03150at 730.603 kb on + strand, within PFLU_RS03150at 730.603 kb on + strand, within PFLU_RS03150at 730.604 kb on - strand, within PFLU_RS03150at 730.604 kb on - strand, within PFLU_RS03150at 730.604 kb on - strand, within PFLU_RS03150at 730.604 kb on - strand, within PFLU_RS03150at 730.604 kb on - strand, within PFLU_RS03150at 730.606 kb on + strand, within PFLU_RS03150at 730.606 kb on + strand, within PFLU_RS03150at 730.606 kb on + strand, within PFLU_RS03150at 730.607 kb on - strand, within PFLU_RS03150at 730.607 kb on - strand, within PFLU_RS03150at 730.607 kb on - strand, within PFLU_RS03150

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
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728,213 + PFLU_RS03135 0.64 +1.1
728,213 + PFLU_RS03135 0.64 +0.6
728,213 + PFLU_RS03135 0.64 +1.2
728,213 + PFLU_RS03135 0.64 +1.9
728,214 - PFLU_RS03135 0.64 +1.8
728,214 - PFLU_RS03135 0.64 +1.7
728,214 - PFLU_RS03135 0.64 +0.5
728,214 - PFLU_RS03135 0.64 +1.1
728,214 - PFLU_RS03135 0.64 +1.3
728,409 + PFLU_RS03135 0.71 +0.2
728,409 + PFLU_RS03135 0.71 +1.4
728,409 + PFLU_RS03135 0.71 +2.9
728,409 + PFLU_RS03135 0.71 +1.1
728,409 + PFLU_RS03135 0.71 +1.6
728,409 + PFLU_RS03135 0.71 +1.0
728,409 + PFLU_RS03135 0.71 +2.3
728,410 - PFLU_RS03135 0.71 +0.5
728,410 - PFLU_RS03135 0.71 +0.9
728,410 - PFLU_RS03135 0.71 +1.1
728,410 - PFLU_RS03135 0.71 +1.9
728,455 - PFLU_RS03135 0.73 +1.1
728,488 + PFLU_RS03135 0.74 +1.4
728,489 - PFLU_RS03135 0.74 +1.6
728,616 + PFLU_RS03135 0.79 +1.9
728,616 + PFLU_RS03135 0.79 +0.8
728,617 - PFLU_RS03135 0.79 +1.8
728,617 - PFLU_RS03135 0.79 +2.0
728,617 - PFLU_RS03135 0.79 +1.1
728,617 - PFLU_RS03135 0.79 +1.0
728,625 + PFLU_RS03135 0.79 +0.9
728,625 + PFLU_RS03135 0.79 +1.3
728,625 + PFLU_RS03135 0.79 +2.1
728,625 + PFLU_RS03135 0.79 +0.9
728,625 + PFLU_RS03135 0.79 +2.2
728,625 + PFLU_RS03135 0.79 +2.3
728,626 - PFLU_RS03135 0.79 +3.0
728,626 - PFLU_RS03135 0.79 +2.1
729,064 + +2.7
729,064 + +1.5
729,176 - +1.3
729,278 + PFLU_RS03140 0.20 +1.1
729,278 + PFLU_RS03140 0.20 +0.9
729,278 + PFLU_RS03140 0.20 +1.3
729,278 + PFLU_RS03140 0.20 +1.9
729,279 - PFLU_RS03140 0.21 +0.2
729,279 - PFLU_RS03140 0.21 +1.7
729,297 - PFLU_RS03140 0.25 -1.7
729,329 + PFLU_RS03140 0.32 +0.5
729,329 + PFLU_RS03140 0.32 +1.2
729,329 + PFLU_RS03140 0.32 +1.1
729,329 + PFLU_RS03140 0.32 +1.0
729,329 + PFLU_RS03140 0.32 -0.1
729,330 - PFLU_RS03140 0.32 +1.1
729,330 - PFLU_RS03140 0.32 +1.2
729,330 - PFLU_RS03140 0.32 +0.9
729,330 - PFLU_RS03140 0.32 +2.2
729,427 - PFLU_RS03140 0.54 +0.6
729,431 + PFLU_RS03140 0.55 +0.9
729,431 + PFLU_RS03140 0.55 +1.8
729,431 + PFLU_RS03140 0.55 -0.2
729,431 + PFLU_RS03140 0.55 +1.5
729,431 + PFLU_RS03140 0.55 +1.8
729,431 + PFLU_RS03140 0.55 +1.2
729,431 + PFLU_RS03140 0.55 +1.9
729,431 + PFLU_RS03140 0.55 +3.1
729,431 + PFLU_RS03140 0.55 +2.8
729,431 + PFLU_RS03140 0.55 +2.0
729,432 - PFLU_RS03140 0.55 +1.3
729,432 - PFLU_RS03140 0.55 +1.3
729,432 - PFLU_RS03140 0.55 +1.2
729,432 - PFLU_RS03140 0.55 +0.4
729,432 - PFLU_RS03140 0.55 +1.1
729,432 - PFLU_RS03140 0.55 +0.7
729,432 - PFLU_RS03140 0.55 +0.4
729,432 - PFLU_RS03140 0.55 +1.5
729,432 - PFLU_RS03140 0.55 +1.5
729,432 - PFLU_RS03140 0.55 -0.8
729,432 - PFLU_RS03140 0.55 +1.2
729,432 - PFLU_RS03140 0.55 +1.6
729,528 + PFLU_RS03140 0.77 +1.7
729,528 + PFLU_RS03140 0.77 +1.9
729,528 + PFLU_RS03140 0.77 +1.8
729,528 + PFLU_RS03140 0.77 +2.6
729,529 - PFLU_RS03140 0.77 +2.1
729,529 - PFLU_RS03140 0.77 +1.2
729,529 - PFLU_RS03140 0.77 +1.6
729,529 - PFLU_RS03140 0.77 +2.0
729,529 - PFLU_RS03140 0.77 +1.5
729,530 + PFLU_RS03140 0.77 +1.6
729,530 + PFLU_RS03140 0.77 +2.2
729,530 + PFLU_RS03140 0.77 +1.8
729,530 + PFLU_RS03140 0.77 +1.2
729,530 + PFLU_RS03140 0.77 +0.4
729,530 + PFLU_RS03140 0.77 +2.5
729,530 + PFLU_RS03140 0.77 +1.3
729,530 + PFLU_RS03140 0.77 +0.6
729,530 + PFLU_RS03140 0.77 +1.6
729,530 + PFLU_RS03140 0.77 +0.8
729,530 + PFLU_RS03140 0.77 +1.5
729,531 - PFLU_RS03140 0.77 +1.8
729,531 - PFLU_RS03140 0.77 +0.5
729,531 - PFLU_RS03140 0.77 +2.0
729,531 - PFLU_RS03140 0.77 +1.2
729,531 - PFLU_RS03140 0.77 +1.8
729,531 - PFLU_RS03140 0.77 +0.9
729,531 - PFLU_RS03140 0.77 +1.3
729,531 - PFLU_RS03140 0.77 +0.8
729,531 - PFLU_RS03140 0.77 +1.8
729,531 - PFLU_RS03140 0.77 +1.3
729,531 - PFLU_RS03140 0.77 +0.3
729,531 - PFLU_RS03140 0.77 +0.9
729,545 + PFLU_RS03140 0.81 +0.8
729,545 + PFLU_RS03140 0.81 +1.1
729,546 - PFLU_RS03140 0.81 +1.6
729,546 - PFLU_RS03140 0.81 +2.3
729,546 - PFLU_RS03140 0.81 +1.9
729,546 - PFLU_RS03140 0.81 +1.4
729,587 - +0.6
729,641 - +0.9
729,641 - +0.5
729,652 + +0.7
729,652 + -1.4
729,655 + +1.2
729,655 + +0.5
729,655 + +0.9
729,655 + +1.2
729,655 + +0.2
729,655 + +1.5
729,655 + -0.6
729,655 + +1.6
729,655 + +0.3
729,655 + -0.9
729,655 + +0.9
729,656 - +0.1
729,656 - -0.5
729,656 - +1.9
729,656 - -1.5
729,656 - -0.9
729,670 + +0.6
729,670 + -1.5
729,670 + -0.2
729,670 + -2.3
729,670 + -0.1
729,671 - -0.3
729,671 - +1.8
729,671 - +0.6
729,671 - +0.2
729,671 - +0.2
729,671 - -0.4
729,671 - -0.1
729,671 - +0.6
729,701 - +1.0
729,722 + +0.9
729,722 + +1.7
729,723 - -0.2
729,723 - +0.4
729,817 + PFLU_RS03145 0.25 +3.8
729,817 + PFLU_RS03145 0.25 +0.6
729,817 + PFLU_RS03145 0.25 +1.3
729,818 - PFLU_RS03145 0.26 +2.9
729,818 - PFLU_RS03145 0.26 +0.7
729,818 - PFLU_RS03145 0.26 +0.7
729,818 - PFLU_RS03145 0.26 +2.1
729,818 - PFLU_RS03145 0.26 +1.1
729,837 + PFLU_RS03145 0.30 +1.3
729,837 + PFLU_RS03145 0.30 +0.6
729,837 + PFLU_RS03145 0.30 +0.9
729,837 + PFLU_RS03145 0.30 +1.8
729,838 - PFLU_RS03145 0.30 +1.5
729,838 - PFLU_RS03145 0.30 +1.0
729,838 - PFLU_RS03145 0.30 -0.1
730,036 - PFLU_RS03145 0.74 +1.1
730,112 + +1.7
730,113 - +0.5
730,113 - +1.7
730,132 + +1.3
730,132 + +0.6
730,133 - +2.4
730,133 - +1.6
730,150 + -0.8
730,168 - -1.8
730,168 - +1.0
730,168 - +1.2
730,177 + +0.8
730,177 + +0.8
730,177 + -0.9
730,177 + -2.3
730,177 + -0.6
730,177 + -1.2
730,177 + -0.2
730,178 - +0.5
730,178 - +3.0
730,178 - +0.6
730,178 - +1.7
730,178 - +1.8
730,178 - +2.4
730,178 - +2.5
730,178 - +1.3
730,178 - +1.9
730,178 - -1.7
730,192 + -0.1
730,192 + -1.9
730,192 + +0.9
730,192 + +0.6
730,193 - +1.9
730,193 - -0.1
730,193 - +2.5
730,193 - +1.4
730,193 - +0.7
730,193 - +2.0
730,193 - +1.6
730,198 + -0.2
730,198 + -1.0
730,198 + +0.8
730,198 + +0.8
730,198 + -2.6
730,198 + -0.8
730,198 + -0.2
730,198 + -0.1
730,198 + -0.8
730,198 + -2.2
730,198 + +0.0
730,198 + -1.1
730,198 + -0.7
730,199 - +3.2
730,199 - +2.7
730,199 - +1.6
730,199 - +1.4
730,199 - +2.2
730,199 - +0.7
730,199 - +0.5
730,199 - +1.7
730,199 - +1.0
730,199 - +2.2
730,204 + -1.0
730,205 - +1.3
730,219 + +1.5
730,220 - +1.2
730,273 + +0.5
730,274 - -1.2
730,289 + +2.0
730,289 + +0.9
730,289 + +2.1
730,290 - +1.3
730,290 - +1.3
730,290 - +1.4
730,290 - +0.2
730,290 - +1.6
730,290 - +0.1
730,373 - PFLU_RS03150 0.12 +1.1
730,603 + PFLU_RS03150 0.41 +1.9
730,603 + PFLU_RS03150 0.41 +1.5
730,604 - PFLU_RS03150 0.41 +0.1
730,604 - PFLU_RS03150 0.41 +2.9
730,604 - PFLU_RS03150 0.41 +1.3
730,604 - PFLU_RS03150 0.41 +1.4
730,604 - PFLU_RS03150 0.41 +0.8
730,606 + PFLU_RS03150 0.41 +2.0
730,606 + PFLU_RS03150 0.41 +0.6
730,606 + PFLU_RS03150 0.41 +2.5
730,607 - PFLU_RS03150 0.42 +1.7
730,607 - PFLU_RS03150 0.42 +0.4
730,607 - PFLU_RS03150 0.42 +0.8

Or see this region's nucleotide sequence