Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04535

Experiment: Iron excess (5x) , H2 media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04530 and MMP_RS04535 are separated by 120 nucleotidesMMP_RS04535 and MMP_RS04540 are separated by 89 nucleotides MMP_RS04530: MMP_RS04530 - ABC transporter permease, at 862,626 to 863,819 _RS04530 MMP_RS04535: MMP_RS04535 - hydroxymethylbilane synthase, at 863,940 to 864,854 _RS04535 MMP_RS04540: MMP_RS04540 - tetratricopeptide repeat protein, at 864,944 to 866,647 _RS04540 Position (kb) 863 864 865Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 862.976 kb on + strand, within MMP_RS04530at 863.006 kb on + strand, within MMP_RS04530at 863.263 kb on + strand, within MMP_RS04530at 863.263 kb on + strand, within MMP_RS04530at 863.267 kb on - strand, within MMP_RS04530at 863.309 kb on + strand, within MMP_RS04530at 863.510 kb on - strand, within MMP_RS04530at 863.728 kb on - strandat 863.740 kb on - strandat 863.740 kb on - strandat 863.740 kb on - strandat 863.752 kb on - strandat 863.753 kb on + strandat 863.753 kb on + strandat 863.760 kb on - strandat 863.801 kb on - strandat 863.802 kb on + strandat 863.836 kb on + strandat 863.847 kb on + strandat 863.849 kb on - strandat 863.874 kb on + strandat 863.915 kb on + strandat 863.920 kb on + strandat 863.924 kb on + strandat 863.969 kb on - strandat 863.970 kb on + strandat 863.994 kb on - strandat 863.995 kb on + strandat 864.010 kb on - strandat 864.011 kb on + strandat 864.047 kb on - strandat 864.048 kb on + strandat 864.075 kb on + strandat 864.245 kb on + strandat 864.290 kb on + strandat 864.424 kb on - strandat 864.425 kb on + strandat 864.700 kb on - strandat 864.729 kb on + strandat 864.763 kb on - strandat 864.766 kb on - strandat 864.767 kb on + strandat 864.771 kb on + strandat 864.771 kb on + strandat 864.771 kb on + strandat 864.828 kb on + strandat 864.845 kb on - strandat 864.849 kb on - strandat 864.849 kb on - strandat 864.897 kb on - strandat 864.901 kb on - strandat 864.974 kb on - strandat 864.974 kb on - strandat 865.115 kb on - strand, within MMP_RS04540at 865.115 kb on - strand, within MMP_RS04540at 865.115 kb on - strand, within MMP_RS04540at 865.348 kb on + strand, within MMP_RS04540at 865.380 kb on - strand, within MMP_RS04540at 865.380 kb on - strand, within MMP_RS04540at 865.468 kb on - strand, within MMP_RS04540at 865.469 kb on + strand, within MMP_RS04540at 865.535 kb on - strand, within MMP_RS04540at 865.536 kb on + strand, within MMP_RS04540at 865.536 kb on + strand, within MMP_RS04540at 865.651 kb on - strand, within MMP_RS04540at 865.657 kb on + strand, within MMP_RS04540at 865.719 kb on - strand, within MMP_RS04540at 865.720 kb on + strand, within MMP_RS04540at 865.726 kb on - strand, within MMP_RS04540at 865.726 kb on - strand, within MMP_RS04540at 865.814 kb on - strand, within MMP_RS04540at 865.815 kb on + strand, within MMP_RS04540at 865.833 kb on - strand, within MMP_RS04540at 865.834 kb on + strand, within MMP_RS04540

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Per-strain Table

Position Strand Gene LocusTag Fraction Iron excess (5x) , H2 media
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862,976 + MMP_RS04530 0.29 +0.4
863,006 + MMP_RS04530 0.32 +0.7
863,263 + MMP_RS04530 0.53 +0.3
863,263 + MMP_RS04530 0.53 -0.6
863,267 - MMP_RS04530 0.54 +0.2
863,309 + MMP_RS04530 0.57 +1.1
863,510 - MMP_RS04530 0.74 +1.1
863,728 - -0.1
863,740 - -0.6
863,740 - +0.5
863,740 - -0.3
863,752 - -0.2
863,753 + -0.7
863,753 + +0.6
863,760 - +0.6
863,801 - -0.5
863,802 + +0.5
863,836 + +0.4
863,847 + +0.6
863,849 - -0.1
863,874 + -0.4
863,915 + -2.5
863,920 + -2.8
863,924 + -0.9
863,969 - -2.6
863,970 + -2.3
863,994 - -1.0
863,995 + -3.2
864,010 - -4.1
864,011 + -2.5
864,047 - -3.2
864,048 + -3.2
864,075 + -2.2
864,245 + -4.5
864,290 + -3.5
864,424 - -0.6
864,425 + -3.7
864,700 - -2.2
864,729 + -3.3
864,763 - -2.0
864,766 - -2.8
864,767 + -3.2
864,771 + -1.0
864,771 + -2.1
864,771 + -4.0
864,828 + +0.0
864,845 - +0.1
864,849 - -0.4
864,849 - +0.0
864,897 - +0.9
864,901 - +0.6
864,974 - +0.2
864,974 - -0.4
865,115 - MMP_RS04540 0.10 +1.2
865,115 - MMP_RS04540 0.10 +0.4
865,115 - MMP_RS04540 0.10 +0.5
865,348 + MMP_RS04540 0.24 +0.7
865,380 - MMP_RS04540 0.26 -0.0
865,380 - MMP_RS04540 0.26 +0.4
865,468 - MMP_RS04540 0.31 +1.0
865,469 + MMP_RS04540 0.31 +0.7
865,535 - MMP_RS04540 0.35 -0.1
865,536 + MMP_RS04540 0.35 -0.2
865,536 + MMP_RS04540 0.35 -0.4
865,651 - MMP_RS04540 0.41 +0.1
865,657 + MMP_RS04540 0.42 +1.0
865,719 - MMP_RS04540 0.45 +0.6
865,720 + MMP_RS04540 0.46 +0.8
865,726 - MMP_RS04540 0.46 +0.8
865,726 - MMP_RS04540 0.46 +1.8
865,814 - MMP_RS04540 0.51 +1.6
865,815 + MMP_RS04540 0.51 +0.3
865,833 - MMP_RS04540 0.52 -0.4
865,834 + MMP_RS04540 0.52 +0.8

Or see this region's nucleotide sequence