Experiment: m.b. D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02350 and PGA1_262p02360 are separated by 40 nucleotides PGA1_262p02360 and PGA1_262p02370 are separated by 9 nucleotides PGA1_262p02370 and PGA1_262p02380 overlap by 4 nucleotides PGA1_262p02380 and PGA1_262p02390 are separated by 81 nucleotides
PGA1_262p02350: PGA1_262p02350 - histidine transport ATP-binding protein HisP, at 257,383 to 258,228
_262p02350
PGA1_262p02360: PGA1_262p02360 - putative histidine-binding periplasmic protein, at 258,269 to 259,048
_262p02360
PGA1_262p02370: PGA1_262p02370 - putative histidine transport system permease protein HisQ, at 259,058 to 259,810
_262p02370
PGA1_262p02380: PGA1_262p02380 - putative histidine transport system permease protein HisM, at 259,807 to 260,583
_262p02380
PGA1_262p02390: PGA1_262p02390 - hypothetical protein, at 260,665 to 261,360
_262p02390
Position (kb) 259
260 Strain fitness (log2 ratio) -2
-1
0
1
2 at 258.197 kb on + strand at 258.439 kb on + strand, within PGA1_262p02360 at 258.439 kb on + strand, within PGA1_262p02360 at 258.477 kb on - strand, within PGA1_262p02360 at 258.501 kb on + strand, within PGA1_262p02360 at 258.691 kb on + strand, within PGA1_262p02360 at 258.761 kb on - strand, within PGA1_262p02360 at 258.795 kb on + strand, within PGA1_262p02360 at 258.876 kb on - strand, within PGA1_262p02360 at 258.877 kb on - strand, within PGA1_262p02360 at 258.931 kb on - strand, within PGA1_262p02360 at 259.041 kb on - strand at 259.046 kb on - strand at 259.095 kb on - strand at 259.274 kb on + strand, within PGA1_262p02370 at 259.274 kb on + strand, within PGA1_262p02370 at 259.274 kb on + strand, within PGA1_262p02370 at 259.282 kb on - strand, within PGA1_262p02370 at 259.329 kb on + strand, within PGA1_262p02370 at 259.524 kb on - strand, within PGA1_262p02370 at 259.533 kb on + strand, within PGA1_262p02370 at 259.568 kb on - strand, within PGA1_262p02370 at 259.809 kb on - strand at 259.916 kb on + strand, within PGA1_262p02380 at 259.985 kb on + strand, within PGA1_262p02380 at 259.985 kb on + strand, within PGA1_262p02380 at 259.986 kb on - strand, within PGA1_262p02380 at 260.030 kb on + strand, within PGA1_262p02380 at 260.105 kb on - strand, within PGA1_262p02380 at 260.114 kb on - strand, within PGA1_262p02380 at 260.171 kb on - strand, within PGA1_262p02380 at 260.174 kb on + strand, within PGA1_262p02380 at 260.174 kb on + strand, within PGA1_262p02380 at 260.182 kb on - strand, within PGA1_262p02380 at 260.200 kb on + strand, within PGA1_262p02380 at 260.258 kb on + strand, within PGA1_262p02380 at 260.264 kb on - strand, within PGA1_262p02380 at 260.304 kb on - strand, within PGA1_262p02380 at 260.330 kb on + strand at 260.393 kb on + strand, within PGA1_262p02380 at 260.436 kb on + strand, within PGA1_262p02380 at 260.453 kb on + strand, within PGA1_262p02380 at 260.461 kb on - strand, within PGA1_262p02380 at 260.632 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml remove 258,197 + -0.1 258,439 + PGA1_262p02360 0.22 +1.1 258,439 + PGA1_262p02360 0.22 -0.9 258,477 - PGA1_262p02360 0.27 -0.3 258,501 + PGA1_262p02360 0.30 +0.3 258,691 + PGA1_262p02360 0.54 -2.3 258,761 - PGA1_262p02360 0.63 +1.3 258,795 + PGA1_262p02360 0.67 -2.5 258,876 - PGA1_262p02360 0.78 -0.5 258,877 - PGA1_262p02360 0.78 -0.2 258,931 - PGA1_262p02360 0.85 -0.2 259,041 - +1.3 259,046 - +0.0 259,095 - +2.1 259,274 + PGA1_262p02370 0.29 +0.4 259,274 + PGA1_262p02370 0.29 -0.9 259,274 + PGA1_262p02370 0.29 +0.2 259,282 - PGA1_262p02370 0.30 +0.9 259,329 + PGA1_262p02370 0.36 +0.1 259,524 - PGA1_262p02370 0.62 +1.2 259,533 + PGA1_262p02370 0.63 -0.4 259,568 - PGA1_262p02370 0.68 -0.5 259,809 - +0.0 259,916 + PGA1_262p02380 0.14 -0.1 259,985 + PGA1_262p02380 0.23 -0.0 259,985 + PGA1_262p02380 0.23 -1.1 259,986 - PGA1_262p02380 0.23 +0.3 260,030 + PGA1_262p02380 0.29 +0.2 260,105 - PGA1_262p02380 0.38 -0.6 260,114 - PGA1_262p02380 0.40 -0.4 260,171 - PGA1_262p02380 0.47 +0.8 260,174 + PGA1_262p02380 0.47 +0.1 260,174 + PGA1_262p02380 0.47 +1.1 260,182 - PGA1_262p02380 0.48 -1.3 260,200 + PGA1_262p02380 0.51 +1.1 260,258 + PGA1_262p02380 0.58 +0.4 260,264 - PGA1_262p02380 0.59 +1.1 260,304 - PGA1_262p02380 0.64 +0.1 260,330 + +1.1 260,393 + PGA1_262p02380 0.75 -0.9 260,436 + PGA1_262p02380 0.81 -0.5 260,453 + PGA1_262p02380 0.83 -0.2 260,461 - PGA1_262p02380 0.84 -0.4 260,632 - +1.4
Or see this region's nucleotide sequence